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Multimodal Diagnostic Approach for Osteosarcoma and Bone Callus Using Hyperspectral Imaging and Deep Learning 基于高光谱成像和深度学习的骨肉瘤和骨痂多模态诊断方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-13 DOI: 10.1002/jbio.202500087
Yan Li, Bingsen Zhao, Shuangxiu Li, Xiaoqing Yang, Minmin Yu, Zhijun Li

Distinguishing osteosarcoma from bone callus remains a clinical challenge due to their morphological similarities. This study proposes J-CAN, a multimodal deep learning framework integrating hyperspectral imaging (HSI) and H&E-stained pathology for rapid and accurate classification. The HSI system captures 176 spectral bands (400–1000 nm), providing molecular-level insights. MobileNetV2 extracts spatial features, while 1D-CNN processes spectral signatures. A self-attention mechanism enhances feature selection, prioritizing key spectral and spatial characteristics to improve classification performance. Experimental results show that J-CAN outperforms conventional models, including LSTM, SVM, and 1D-CNN, achieving 87.33% accuracy, 89.07% sensitivity, and 85.49% specificity. These findings demonstrate the potential of HSI-driven deep learning for clinical pathology, enabling efficient, automated osteosarcoma diagnosis. This approach enhances diagnostic precision and provides a valuable tool for pathologists, addressing the limitations of traditional histopathological assessments and improving the differentiation between osteosarcoma and bone callus.

区分骨肉瘤和骨痂是一个临床挑战,因为它们的形态相似。本研究提出了J-CAN,一种多模态深度学习框架,将高光谱成像(HSI)和h&e染色病理学相结合,用于快速准确的分类。HSI系统捕获176个光谱波段(400-1000 nm),提供分子水平的见解。MobileNetV2提取空间特征,而1D-CNN处理光谱特征。自关注机制增强了特征选择,优先考虑关键的光谱和空间特征,以提高分类性能。实验结果表明,J-CAN优于LSTM、SVM、1D-CNN等传统模型,准确率为87.33%,灵敏度为89.07%,特异度为85.49%。这些发现证明了hsi驱动的深度学习在临床病理学中的潜力,可以实现高效、自动化的骨肉瘤诊断。这种方法提高了诊断精度,为病理学家提供了有价值的工具,解决了传统组织病理学评估的局限性,提高了骨肉瘤和骨痂之间的区分。
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引用次数: 0
Convolutional Neural Networks Enable Direct Strain Estimation in Quasistatic Optical Coherence Elastography 卷积神经网络实现准静态光学相干弹性成像的直接应变估计。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-13 DOI: 10.1002/jbio.202400386
Achuth Nair, Manmohan Singh, Salavat R. Aglyamov, Kirill V. Larin

Assessing the biomechanical properties of tissues can provide important information for disease diagnosis and therapeutic monitoring. Optical coherence elastography (OCE) is an emerging technology for measuring the biomechanical properties of tissues. Clinical translation of this technology is underway, and steps are being implemented to streamline data collection and processing. OCE data can be noisy, data processing can require significant manual tuning, and a single acquisition may contain gigabytes of data. In this work, we introduce a convolutional neural network-based method to translate raw OCE phase data to strain for quasistatic OCE that is ~40X faster than the conventional least squares approach by bypassing many intermediate data processing steps. The results suggest that a machine learning approach may be a valuable tool for fast, efficient, and accurate extraction of biomechanical information from raw OCE data.

评估组织的生物力学特性可以为疾病诊断和治疗监测提供重要信息。光学相干弹性成像(OCE)是一种新兴的测量组织生物力学特性的技术。这项技术的临床转化正在进行中,并且正在实施步骤以简化数据收集和处理。OCE数据可能有噪声,数据处理可能需要大量的手动调优,并且单个采集可能包含千兆字节的数据。在这项工作中,我们引入了一种基于卷积神经网络的方法,通过绕过许多中间数据处理步骤,将原始OCE相位数据转换为准静态OCE的应变,比传统的最小二乘方法快40倍。结果表明,机器学习方法可能是一种有价值的工具,可以快速、高效、准确地从原始OCE数据中提取生物力学信息。
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引用次数: 0
Depth-Dependent Color-Coded Optical Attenuation Coefficient Imaging: Assisted Examination Methods of Facial Microcirculation 深度相关彩色编码光学衰减系数成像:面部微循环辅助检查方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-13 DOI: 10.1002/jbio.202500074
Jian Liu, Linghui Kong, Binyin Zhang, Yao Yu, Zhenhe Ma

This study investigates the relationship between facial microcirculation and optical parameters using swept-source optical coherence tomography (SS-OCT). Facial microcirculation deterioration impacts skin health by causing blood stagnation and metabolic disorders, influencing optical properties like scattering and attenuation. High-resolution SS-OCT imaging revealed distinct correlations between blood flow and optical attenuation coefficient (OAC) across skin layers: epidermal OAC showed a negative correlation with blood flow (r = −0.29 ± 0.03), while dermal OAC demonstrated a positive correlation (r = −0.43 ± 0.06). Leveraging this finding, we developed a depth-encoded color OAC imaging mode that enhances facial microcirculation visualization without additional scanning. The work provides mechanistic insights into microcirculation-related skin deterioration and establishes a novel clinical tool for diagnosing and managing associated conditions.

本研究利用扫描源光学相干断层扫描(SS-OCT)研究了面部微循环与光学参数的关系。面部微循环恶化通过引起血液停滞和代谢紊乱影响皮肤健康,影响散射和衰减等光学特性。高分辨率SS-OCT成像显示血流量与跨皮肤层光学衰减系数(OAC)有明显的相关性:表皮OAC与血流量呈负相关(r = -0.29±0.03),真皮OAC呈正相关(r = -0.43±0.06)。利用这一发现,我们开发了一种深度编码彩色OAC成像模式,无需额外扫描即可增强面部微循环可视化。这项工作为微循环相关的皮肤恶化提供了机制见解,并为诊断和管理相关疾病建立了一种新的临床工具。
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引用次数: 0
Development of 3D Intelligent Quantitative Phase Microscope for Sickle Cells Screening 用于镰状细胞筛选的三维智能定量相显微镜的研制
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-13 DOI: 10.1002/jbio.202400512
Sautami Basu, Gyanendra Singh, Ravinder Agarwal, Vishal Srivastava

Sickle cell disease (SCD) is a genetic blood disorder causing red blood cells to deform into a sickle shape, often leading to misdiagnosis. Early detection is crucial, but traditional screening is slow and labor-intensive. This paper introduces an intelligent microscope system for automated SCD screening, reducing manual intervention. The system uses an interferometric method to capture high-resolution 3D phase images, combined with a deep learning-based UNET model for semantic segmentation of sickle and healthy cells. Various machine-learning models classify RBCs, with the Gradient boosting model achieving 94.9% accuracy. The system is scalable, user-friendly, and well suited for resource-limited settings, offering a faster, more reliable diagnostic tool. This innovation not only improves SCD detection but also sets the stage for AI-driven haematological diagnostics. Future advancements will enhance system robustness and undergo extensive clinical validation.

镰状细胞病(SCD)是一种遗传性血液疾病,导致红细胞变形成镰状,经常导致误诊。早期发现是至关重要的,但传统的筛查速度缓慢且劳动密集。本文介绍了一种用于SCD自动筛选的智能显微镜系统,减少了人工干预。该系统使用干涉测量法捕获高分辨率3D相位图像,并结合基于深度学习的UNET模型对镰状细胞和健康细胞进行语义分割。各种机器学习模型对红细胞进行分类,其中梯度增强模型的准确率达到94.9%。该系统具有可扩展性、用户友好性,非常适合资源有限的环境,可提供更快、更可靠的诊断工具。这一创新不仅改善了SCD检测,而且为人工智能驱动的血液学诊断奠定了基础。未来的进展将增强系统的稳健性,并进行广泛的临床验证。
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引用次数: 0
A Novel Method for Rapid Measurement of Facial Blood Oxygen Saturation Using a Snapshot Multispectral Imager 一种利用快照多光谱成像仪快速测量面部血氧饱和度的新方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-04-29 DOI: 10.1002/jbio.70001
Zhao Yizhuo, Ren Yu, Cai Hongxing, Wang Tingting, Wang Yiming, Liu Jianguo, Jing Yanmei

Blood oxygen saturation measuring is crucial for the diagnosis of disease severity. Despite the great efforts in non-contact vital signs monitoring by image photoplethysmography (IPPG) technology, the high-efficiency acquisition of transient image data is still challenging and generally requires complicated data processing processes. In this paper, we demonstrated a novel method for rapid measurement of blood oxygen saturation. A snapshot multispectral imager was employed in the proposed solution to transiently capture changes in spectral image information from facial tissue skin.

血氧饱和度测定对疾病严重程度的诊断至关重要。尽管利用图像光体积脉搏波(IPPG)技术进行非接触式生命体征监测取得了很大的进展,但高效获取瞬态图像数据仍然是一个挑战,通常需要复杂的数据处理过程。在本文中,我们展示了一种快速测量血氧饱和度的新方法。该方案采用快照多光谱成像仪对面部组织皮肤的光谱图像信息进行瞬时捕获。
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引用次数: 0
Mitochondrial Oxygen Consumption and Immunocytochemistry of Human Dental Pulp Stem Cell Following 808 nm PBM Therapy: A 3D Cell Culture Study 808 nm PBM治疗后人牙髓干细胞线粒体耗氧量和免疫细胞化学:3D细胞培养研究
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-04-28 DOI: 10.1002/jbio.70051
Simone L. Sleep, Eliza Ranjit, Jennifer Gunter, Deanne H. Hryciw, Praveen Arany, Roy George

This study investigated the impact of 808 nm laser photobiomodulation (PBM) on mitochondrial respiration and osteogenic protein expression (OCN, OPN, ALP, RUNX2, COL-1, BMP-2) in human dental pulp stem cells (hDPSCs) within a 3D hydrogel model. hDPSCs were isolated from third molars and maintained under hypoxic conditions. Cells received PBM at 5 and 15 J/cm2 using an 808 nm diode laser. The study showed that 808 nm PBM can alter mitochondrial respiration, with 5 J/cm2 enhancing osteogenic protein expression (OCN, ALP, OPN, RUNX2) but failing to sustain BMP-2 at 24 h. In contrast, 15 J/cm2 induced stronger upregulation and prolonged BMP-2 expression, suggesting an optimal dose for sustained osteogenic activity. BMP-2 was later downregulated, and COL-1 remained unchanged post-PBM. Importantly, this study indicates the dose-specific PBM modulation of mitochondrial respiration and protein expression, but further research is required to optimize treatment protocols.

本研究在3D水凝胶模型中研究了808 nm激光光生物调节(PBM)对人牙髓干细胞(hDPSCs)线粒体呼吸和成骨蛋白(OCN、OPN、ALP、RUNX2、COL-1、BMP-2)表达的影响。从第三磨牙中分离出hdpsc并在缺氧条件下维持。使用808 nm二极管激光器接收5和15 J/cm2的PBM。研究表明,808 nm PBM可改变线粒体呼吸,5 J/cm2可提高成骨蛋白(OCN、ALP、OPN、RUNX2)的表达,但不能维持24 h的BMP-2。相比之下,15 J/cm2诱导了更强的上调和延长BMP-2表达,这表明维持成骨活性的最佳剂量。BMP-2随后下调,而COL-1在pbm后保持不变。重要的是,这项研究表明了PBM对线粒体呼吸和蛋白质表达的剂量特异性调节,但需要进一步的研究来优化治疗方案。
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引用次数: 0
Analysis of Hyperspectral Imaging Using CNN-GRU for Gastric Adenomatous Polyp and Adenocarcinoma Classification CNN-GRU高光谱成像对胃腺瘤性息肉及腺癌分类的分析。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-04-27 DOI: 10.1002/jbio.70047
Xuzhe Wang, Xiaoqing Yue, Tianyi Hang, Shuai Liu

Early identification of gastric adenomatous polyps and adenocarcinoma is vital for improving patient outcomes. This study proposes a hybrid CNN-GRU model to classify one-dimensional hyperspectral data from ex vivo gastric tissues, addressing limitations of traditional diagnostics. Our model innovatively combines convolutional neural networks (CNNs) and gated recurrent units (GRUs) to capture both spatial and sequential dependencies in spectral data. Experimental results demonstrate that our model achieves an accuracy of 86%, sensitivity of 88%, and specificity of 85%. Additionally, receiver operating characteristic analysis further underscores its robust performance with an area under the curve of 0.86, surpassing traditional methods and other baseline models. These findings highlight the potential of leveraging advanced machine learning techniques to enhance early diagnostic accuracy and treatment strategies. The proposed approach offers a promising tool for rapid, accurate differentiation of gastric lesions, underscoring the importance of integrating innovative technologies in clinical diagnostics.

早期识别胃腺瘤性息肉和腺癌对改善患者预后至关重要。本研究提出了一种混合CNN-GRU模型来分类来自离体胃组织的一维高光谱数据,解决了传统诊断的局限性。我们的模型创新地结合了卷积神经网络(cnn)和门控循环单元(gru)来捕获光谱数据中的空间和顺序依赖关系。实验结果表明,该模型的准确率为86%,灵敏度为88%,特异性为85%。此外,接收机工作特性分析进一步强调了其稳健性,曲线下面积为0.86,优于传统方法和其他基线模型。这些发现突出了利用先进的机器学习技术来提高早期诊断准确性和治疗策略的潜力。该方法为快速、准确地区分胃病变提供了一种有前途的工具,强调了在临床诊断中整合创新技术的重要性。
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引用次数: 0
Fast Registration Method for Large-Field-Of-View Nailfold Video Images Based on Improved Projection Analysis 基于改进投影分析的大视场折甲视频图像快速配准方法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-04-27 DOI: 10.1002/jbio.70052
Peiqing Guo, Hao Yin, Yanxiong Wu, Bin Zhou, Jiaxiong Luo, Qianyao Ye, Shou Feng, Qirui Sun, Hongjun Zhou, Fanxin Zeng

In nailfold video recordings, the micro-shaking of the hand is amplified and interferes with physician observations and parameter measurement. We developed a fast and accurate registration method for large-field-of-view nailfold video images. Nailfold videos are first represented in the YCrCb color space, with the Cb spatial component replacing the original grayscale image to reduce sensitivity to illumination. The projection variance of each row/column is employed to improve registration accuracy and processing speed. The method was compared with Origin GrayDrop, feature point matching, unsupervised learning, and Adobe Premiere Pro in terms of the peak signal-to-noise ratio, structural similarity index, and mean squared error. The peak signal-to-noise ratio and structural similarity index are enhanced, and the mean squared error is reduced compared to the original projection method. Moreover, the proposed method is faster than the comparison methods and provides the best combination of registration accuracy and fast processing for nailfold video image registration.

在甲襞视频记录中,手的微抖动被放大,干扰了医生的观察和参数测量。针对大视场甲襞视频图像,提出了一种快速准确的配准方法。甲襞视频首先在YCrCb色彩空间中表示,用Cb空间分量代替原始灰度图像,以降低对光照的敏感性。利用行/列的投影方差提高配准精度和处理速度。将该方法与Origin GrayDrop、特征点匹配、无监督学习和Adobe Premiere Pro进行峰值信噪比、结构相似度指数和均方误差的比较。提高了峰值信噪比和结构相似度,减小了均方误差。此外,该方法比对比方法更快,为甲襞视频图像配准提供了配准精度和快速处理的最佳结合。
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引用次数: 0
Development of an Adjustable Arm-Type Swept-Source Optical Coherence Tomography System for Pediatric Patients With Congenital Cataracts 用于儿童先天性白内障患者的可调臂型扫描源光学相干断层扫描系统的研制。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-04-24 DOI: 10.1002/jbio.70039
Wuge Shama, Sisi Chen, Wanyu Su, Yinglong Lan, Shilei Wang, Peifeng Zhang, Yue Jin, Zhangliang Li, Yun-e Zhao, Fan Lu, Meixiao Shen

We developed a stable, high-penetration arm-type swept-source optical coherence tomography (SS-OCT) system for visualizing retinal and choroidal structures in pediatric patients with congenital cataracts. The system features a compact OCT probe with an integrated iris camera and fixation target for easy alignment, mounted on a five-degree-of-freedom adjustable arm to reduce motion artifacts and operator fatigue. Feasibility was demonstrated through supine retinal imaging of healthy adults, congenital cataract children, and infants, achieving success rates of 100%, 97%, and 95%, respectively. The system captured abnormal retinal features (e.g., absent foveal structure) in congenital cataract patients, highlighting its clinical value for monitoring retinal development. High-speed (200 kHz) imaging and high-resolution (4.1 μm) further support its dual role in clinical diagnosis and scientific research, such as retinal development studies and visual prognosis modeling. This system demonstrates significant potential for routine use in clinical practice and research, offering a reliable tool for pediatric ophthalmic imaging.

我们开发了一种稳定的、高穿透性的臂型扫描源光学相干断层扫描(SS-OCT)系统,用于观察先天性白内障儿童患者的视网膜和脉络膜结构。该系统的特点是一个紧凑的OCT探头,集成了虹膜相机和固定目标,便于校准,安装在一个五自由度可调节的手臂上,以减少运动伪影和操作员疲劳。通过对健康成人、先天性白内障儿童和婴儿的仰卧视网膜成像证明了该方法的可行性,成功率分别为100%、97%和95%。该系统捕捉先天性白内障患者视网膜异常特征(如中央凹结构缺失),突出了其监测视网膜发育的临床价值。高速(200 kHz)成像和高分辨率(4.1 μm)进一步支持其在临床诊断和科学研究中的双重作用,如视网膜发育研究和视觉预后建模。该系统在临床实践和研究中具有重要的常规应用潜力,为儿童眼科成像提供了可靠的工具。
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引用次数: 0
Adaptive Run-Length Encoded DCT: A High-Fidelity Compression Algorithm for Real-Time Photoacoustic Microscopy Imaging in LabVIEW 自适应运行长度编码DCT:一种用于实时光声显微镜成像的高保真压缩算法。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-04-23 DOI: 10.1002/jbio.70043
Mohsin Zafar, Kamran Avanaki

Continuous photoacoustic microscopy (PAM) imaging generates large volumes of data, resulting in significant storage demands. Here, we propose a high-fidelity real-time compression algorithm for PAM data in LabVIEW by combining Discrete Cosine Transform (DCT) with adaptive thresholding and Run Length Encoding (RLE), which we term Adaptive Run Length Encoded DCT (AR-DCT) compression. This algorithm reduces data storage requirements while preserving all the details of the images. AR-DCT ensures real-time compression, achieving superior compression ratios (CRs) compared to traditional DCT compression. We evaluated the performance of AR-DCT using in vivo mouse brain imaging data, demonstrating a CR of ~50, with a structural similarity index of 0.980 and minimal degradation in signal quality (percentage-root-mean-square-difference of 1.345%). The results show that AR-DCT outperforms traditional DCT, offering higher compression efficiency without significantly sacrificing image quality. These findings suggest that AR-DCT provides an effective solution for applications requiring continuous experiments, such as cerebral hemodynamics studies.

连续光声显微镜(PAM)成像产生大量的数据,导致显著的存储需求。在LabVIEW中,我们提出了一种高保真的PAM数据实时压缩算法,该算法将离散余弦变换(DCT)与自适应阈值和运行长度编码(RLE)相结合,我们称之为自适应运行长度编码DCT (AR-DCT)压缩。该算法减少了数据存储需求,同时保留了图像的所有细节。AR-DCT确保实时压缩,与传统的DCT压缩相比,实现了更高的压缩比(CRs)。我们使用活体小鼠脑成像数据评估AR-DCT的性能,显示CR为~50,结构相似指数为0.980,信号质量下降最小(百分比-均方根差为1.345%)。结果表明,AR-DCT优于传统的DCT,在不显著牺牲图像质量的情况下提供更高的压缩效率。这些发现表明AR-DCT为脑血流动力学研究等需要连续实验的应用提供了有效的解决方案。
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引用次数: 0
期刊
Journal of Biophotonics
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