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Raman Spectroscopic Analysis of Urinary Creatine and Phosphate in Athletes: Pre- and Post-Training Assessment 运动员尿液肌酸和磷酸盐的拉曼光谱分析:训练前和训练后评估
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-12 DOI: 10.1002/jbio.202400210
Letícia C. S. Santos, Landulfo Silveira Jr, Marcos T. T. Pacheco

The aim of this study was to detect biochemical components in the urine of bodybuilders who ingested creatine pretraining compared to individuals who did not ingest creatine after physical exercise using Raman spectroscopy. Twenty volunteers practicing bodybuilding were selected to collect pre- and post-training urine samples, where 10 volunteers ingested creatine 30 min before pretraining urine collection (creatine group), and 10 did not (control group). The samples were subjected to Raman spectroscopy, and the spectra of both creatine and control groups and the difference (post—pre) for both groups were analyzed. Principal component analysis (PCA) technique was applied to the samples. The results showed peaks of creatine and phosphate in urine after training (creatine post-training group), suggesting that part of the creatine was absorbed and metabolized, and part was excreted. Raman spectroscopy could be applied to detect biocompounds in urine, such as unmetabolized creatine and phosphate.

本研究的目的是利用拉曼光谱检测健美运动员与未摄入肌酸的人在体育锻炼后尿液中的生化成分。研究人员选取了 20 名从事健美运动的志愿者,采集他们训练前和训练后的尿液样本,其中 10 名志愿者在训练前 30 分钟采集尿液样本时摄入了肌酸(肌酸组),10 名志愿者没有摄入肌酸(对照组)。对样本进行拉曼光谱分析,分析肌酸组和对照组的光谱以及两组的差异(训练前-训练后)。对样品采用了主成分分析(PCA)技术。结果显示,训练后(肌酸训练后组)尿液中的肌酸和磷酸盐达到峰值,表明部分肌酸被吸收和代谢,部分被排出体外。拉曼光谱可用于检测尿液中的生物化合物,如未代谢的肌酸和磷酸盐。
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引用次数: 0
Feasibility Study of Label-Free Raman Spectroscopy for Parathyroid Gland Identification 无标签拉曼光谱鉴定甲状旁腺的可行性研究
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-11 DOI: 10.1002/jbio.202400220
Hao Wang, Sisi Guo, Ruoyu Zhang, Jing Yao, Wen Tian, Jianfeng Wang

We aim to evaluate the feasibility of Raman spectroscopy for parathyroid gland (PG) identification during thyroidectomy. Using a novel side-viewing handheld Raman probe, a total of 324 Raman spectra of four tissue types (i.e., thyroid, lymph node, PG, and lipid) commonly encountered during thyroidectomy were rapidly (< 3 s) acquired from 80 tissue sites (thyroid [n = 10], lymph node [n = 10], PG [n = 40], lipid [n = 20]) of 10 euthanized Wistar rats. Two partial least-squares (PLS)-discriminant analysis (DA) detection models were developed, differentiating the lipid and nonlipid (i.e., thyroid, lymph node, and PG) tissues with an accuracy of 100%, and PG, lymph node, and thyroid could be detected with an accuracy of 98.4%, 93.9%, and 95.4% respectively. This work demonstrates the feasibility of Raman spectroscopy technique for PG identification and protection during thyroidectomy at the molecular level.

我们旨在评估在甲状腺切除术中使用拉曼光谱识别甲状旁腺(PG)的可行性。我们使用新型侧视手持式拉曼光谱探针,对甲状腺切除术中常见的四种组织类型(即甲状腺、淋巴结、甲状旁腺和脂质)共 324 个拉曼光谱进行了快速 (
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引用次数: 0
SFNet: Spatial and Frequency Domain Networks for Wide-Field OCT Angiography Retinal Vessel Segmentation SFNet:用于宽视场 OCT 血管造影视网膜血管分割的空间和频率域网络。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-11 DOI: 10.1002/jbio.202400420
Sien Li, Fei Ma, Fen Yan, Xiwei Dong, Yanfei Guo, Jing Meng, Hongjuan Liu

Automatic segmentation of blood vessels in fundus images is important to assist ophthalmologists in diagnosis. However, automatic segmentation for Optical Coherence Tomography Angiography (OCTA) blood vessels has not been fully investigated due to various difficulties, such as vessel complexity. In addition, there are only a few publicly available OCTA image data sets for training and validating segmentation algorithms. To address these issues, we constructed a wild-field retinal OCTA segmentation data set, the Retinal Vessels Images in OCTA (REVIO) dataset. Second, we propose a new retinal vessel segmentation network based on spatial and frequency domain networks (SFNet). The proposed model are tested on three benchmark data sets including REVIO, ROSE and OCTA-500. The experimental results show superior performance on segmentation tasks compared to the representative methods.

自动分割眼底图像中的血管对于帮助眼科医生进行诊断非常重要。然而,由于血管复杂性等各种困难,光学相干断层扫描(OCTA)血管的自动分割尚未得到充分研究。此外,只有少数公开的 OCTA 图像数据集可用于训练和验证分割算法。为了解决这些问题,我们构建了一个野场视网膜 OCTA 分割数据集,即视网膜血管 OCTA 图像(REVIO)数据集。其次,我们提出了一种基于空间和频域网络(SFNet)的新型视网膜血管分割网络。我们在三个基准数据集(包括 REVIO、ROSE 和 OCTA-500)上测试了所提出的模型。实验结果表明,与其他具有代表性的方法相比,SFNet 在分割任务上具有更优越的性能。
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引用次数: 0
Necrotizing Enterocolitis Detection in Premature Infants Using Broadband Optical Spectroscopy 利用宽带光学光谱仪检测早产儿坏死性小肠结肠炎
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-11 DOI: 10.1002/jbio.202400273
Ethan Flowerday, Ali Daneshkhah, Yuanzhe Su, Vadim Backman, Seth D. Goldstein

Necrotizing enterocolitis (NEC) is a devastating disease affecting premature infants. Broadband optical spectroscopy (BOS) is a method of noninvasive optical data collection from intra-abdominal organs in premature infants, offering potential for disease detection. Herein, a novel machine learning approach, iterative principal component analysis (iPCA), is developed to select optimal wavelengths from BOS data collected in vivo from neonatal intensive care unit (NICU) patients for NEC classification. Neural network models were trained for classification, with a reduced-feature model distinguishing NEC with an accuracy of 88%, a sensitivity of 89%, and a specificity of 88%. While whole-spectrum models performed the best for accuracy and specificity, a reduced feature model excelled in sensitivity, with minimal cost to other metrics. This research supports the hypothesis that the analysis of human tissue via BOS may permit noninvasive disease detection. Furthermore, a medical device optimized with these models may potentially screen for NEC with as few as seven wavelengths.

坏死性小肠结肠炎(NEC)是一种影响早产儿的毁灭性疾病。宽带光学光谱(BOS)是一种从早产儿腹腔内器官收集无创光学数据的方法,为疾病检测提供了潜力。本文开发了一种新颖的机器学习方法--迭代主成分分析法(iPCA),从新生儿重症监护室(NICU)患者体内采集的 BOS 数据中选择最佳波长进行 NEC 分类。对神经网络模型进行了分类训练,简化特征模型区分 NEC 的准确率为 88%,灵敏度为 89%,特异性为 88%。虽然全谱模型在准确性和特异性方面表现最佳,但缩减特征模型在灵敏度方面表现突出,而且对其他指标的影响最小。这项研究支持了通过 BOS 分析人体组织可以进行非侵入性疾病检测的假设。此外,利用这些模型优化的医疗设备可能只需 7 个波长就能筛查 NEC。
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引用次数: 0
Label-Free Detection of Breast Phyllodes Tumors Based on Multiphoton Microscopy 基于多光子显微镜的乳腺植物瘤无标记检测技术
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-09 DOI: 10.1002/jbio.202400392
Xi Chen, Junzhen Jiang, Liwen Hu, Xiaoli Su, Zheng Zhang, Xiong Zhang, Tao Zhong, Jianping Huang, Shulian Wu, Lina Liu, Jianxin Chen, Liqin Zheng, Xingfu Wang

Phyllodes tumors (PTs) are rare breast stroma neoplasms, and their accurate identification at various stages is essential for personalized patient treatment. In this study, multiphoton microscopy (MPM) with two-photon excited fluorescence (TPEF) and second harmonic generation (SHG) imaging was used for label-free detection and differentiation of PTs and normal breast tissue. An automated image processing strategy was developed to quantify changes in collagen fiber morphology within the stroma and boundary of PTs, establishing optical diagnostic characteristics of PTs using MPM. The results demonstrated that MPM could be used for the detection of different stages of PTs, and the morphological alterations in collagen fibers could serve as critical indicators of PT malignancy, offering new insights for the diagnosis and grading of benign, borderline, and malignant PTs. It lays the groundwork for the future application of compact MPM for the rapid detection and diagnosis of PTs.

植物瘤(PTs)是一种罕见的乳腺间质肿瘤,在不同阶段对其进行准确识别对于患者的个性化治疗至关重要。在这项研究中,多光子显微镜(MPM)与双光子激发荧光(TPEF)和二次谐波发生(SHG)成像被用于无标记检测和区分PTs和正常乳腺组织。研究人员开发了一种自动图像处理策略,用于量化PTs基质和边界内胶原纤维形态的变化,从而利用MPM建立PTs的光学诊断特征。结果表明,MPM 可用于检测不同阶段的 PT,胶原纤维的形态变化可作为 PT 恶性的关键指标,为良性、边缘性和恶性 PT 的诊断和分级提供了新的见解。该研究为今后应用紧凑型 MPM 快速检测和诊断 PT 奠定了基础。
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引用次数: 0
Wavelet Phase Coherence Analysis of Oxyhemoglobin and DeoxyHemoglobin Oscillations to Investigate the Relationship Between Cups of Cupping Therapy 对氧合血红蛋白和脱氧血红蛋白振荡的小波相干分析,以研究拔罐疗法杯之间的关系。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-08 DOI: 10.1002/jbio.202400337
Liwan Huang, Pu-Chun Mo, Mansoureh Samadi, Wei-Cheng Shen, Hongjun Yu, Manuel Hernandez, Yih-Kuen Jan

Research has not demonstrated whether multiple cups of negative pressure cupping therapy would induce interactions of hemodynamic responses between different areas. A multichannel near-infrared spectroscopy (NIRS) was used to assess oxyhemoglobin and deoxyhemoglobin oscillations in response to cupping therapy. Wavelet transform and wavelet phase (WPC) coherence were used to quantify NIRS signals. Three levels of negative pressure (−75, −225, and −300 mmHg) were applied to the gastrocnemius in 12 healthy adults. Oxyhemoglobin coherence between the two inside-cup areas was higher at −75 mmHg compared to −300 mmHg in both metabolic (WPC = 0.80 ± 0.11 vs. 0.73 ± 0.13) and neurogenic (WPC = 0.70 ± 0.11 vs. 0.60 ± 0.17) controls. Deoxyhemoglobin coherence was also higher at −75 mmHg compared to −300 mmHg in both metabolic (WPC = 0.78 ± 0.11 vs. 0.66 ± 0.14) and neurogenic (WPC = 0.67 ± 0.11 vs. 0.58 ± 0.13) controls. Our study provides first evidence on the interaction of hemodynamic responses between the two cups of cupping therapy using WPC analysis of NIRS signals.

研究尚未证明多杯负压拔罐疗法是否会引起不同区域之间血液动力学反应的相互作用。多通道近红外光谱(NIRS)用于评估氧合血红蛋白和脱氧血红蛋白对拔罐疗法的振荡反应。小波变换和小波相位(WPC)相干被用来量化 NIRS 信号。对 12 名健康成年人的腓肠肌施加三个水平的负压(-75、-225 和 -300mmHg)。在代谢性(WPC = 0.80 ± 0.11 vs. 0.73 ± 0.13)和神经源性(WPC = 0.70 ± 0.11 vs. 0.60 ± 0.17)对照组中,-75 mmHg 时两个肚脐内侧区域的氧合血红蛋白相干性高于-300 mmHg。代谢性(WPC = 0.78 ± 0.11 vs. 0.66 ± 0.14)和神经源性(WPC = 0.67 ± 0.11 vs. 0.58 ± 0.13)对照组在-75 mmHg时的脱氧血红蛋白一致性也高于-300 mmHg时的脱氧血红蛋白一致性。我们的研究利用近红外光谱信号的 WPC 分析,首次提供了两杯拔罐疗法之间血液动力学反应相互作用的证据。
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引用次数: 0
High-Efficiency Targeted Gene Transfection of Cells Using Temporal and Spatial Shaping Femtosecond Laser Irradiation 利用时间和空间塑形飞秒激光照射实现高效的细胞靶向基因转染。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-11-06 DOI: 10.1002/jbio.202400409
Baoshan Guo, Ziyan Song

Laser-irradiation-assisted cell gene transfection is sterile and nontoxic, but the low transfection efficiency cannot meet the application requirements. To improve the efficiency, a temporal and spatial shaping method of a femtosecond laser is proposed. Using the time shaping method, we can segment the pulse into subpulses of varying energies and with a defined delay, thereby influencing the interaction between electrons and photons, ultimately enhancing transfection efficiency. The transfection efficiency is further improved by spatially shaping the laser pulse to extend the focusing beam's working distance and reduce the cell's sensitivity to the focal position. Through the characterization of the viability and transfection efficiency of HEK-293T cells, the method achieved efficient and active transfection, with a maximum transfection efficiency of 45.1% and a cell survival rate of 93.6%. This method provides key technical support for femtosecond laser transfection and promotes its further application in clinical practice.

激光照射辅助细胞基因转染具有无菌、无毒的特点,但转染效率较低,不能满足应用要求。为了提高转染效率,我们提出了一种飞秒激光的时间和空间整形方法。利用时间整形法,我们可以将脉冲分割成不同能量和不同延迟的子脉冲,从而影响电子和光子之间的相互作用,最终提高转染效率。通过对激光脉冲进行空间整形,延长聚焦光束的工作距离,降低细胞对聚焦位置的敏感性,从而进一步提高转染效率。通过对 HEK-293T 细胞存活率和转染效率的表征,该方法实现了高效、主动转染,最高转染效率达 45.1%,细胞存活率达 93.6%。该方法为飞秒激光转染提供了关键技术支撑,促进了飞秒激光转染在临床上的进一步应用。
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引用次数: 0
An In Vitro Study of 355-nm Laser Ablation of Atherosclerotic Lesions Model 355纳米激光消融动脉粥样硬化病变模型的体外研究
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-29 DOI: 10.1002/jbio.202400329
Fangying Wei, Jiajun He, Shiyong Zhao, Peng Lei, Qingjie Zhang, Guangxi Li, Xiaopeng Li, Xin Ding, Jianquan Yao

A study of 355 nm laser with high pulse energy across various types of atherosclerotic lesion models is presented. The 355 nm laser pulses (10 ns) are delivered via a single fiber (600 μm diameter), and the ablation of calcified tissue, lipid tissue, and thrombus-like tissue are studied under varied laser fluence (40–70 mJ/mm2) and repetition rate (5–30 Hz). The contact and noncontact ablation processes of chicken tibia samples (calcified tissue) are compared at 60 mJ/mm2 and 30 Hz, and the size of ablation particles is in the range of 0.1–1 μm. At the same repetition rate, the advancement rate of tricalcium phosphate samples reaches 150 μm/s at 70 mJ/mm2. Calcified and lipid models demonstrate predictable increases in ablation with higher laser fluence and repetition rate. The fresh porcine blood clot samples exhibit high-quality ablation with good channel effect at 50 mJ/mm2 and 30 Hz.

本文介绍了一项针对各种类型动脉粥样硬化病变模型的高脉冲能量 355 nm 激光研究。355 nm 激光脉冲(10 ns)通过单根光纤(直径 600 μm)传输,在不同的激光能量(40-70 mJ/mm2)和重复率(5-30 Hz)条件下研究了钙化组织、脂质组织和血栓样组织的消融情况。比较了鸡胫骨样本(钙化组织)在 60 mJ/mm2 和 30 Hz 下的接触式和非接触式烧蚀过程,烧蚀颗粒的大小在 0.1-1 μm 之间。在相同的重复率下,磷酸三钙样品在 70 mJ/mm2 时的推进速度达到 150 μm/s。钙化和脂质模型的烧蚀率随着激光能量和重复率的增加而增加。在 50 mJ/mm2 和 30 Hz 的条件下,新鲜猪血凝块样品表现出高质量的消融和良好的通道效应。
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引用次数: 0
Deep Learning With Optical Coherence Tomography for Melanoma Identification and Risk Prediction 深度学习与光学相干断层扫描用于黑色素瘤识别和风险预测。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-27 DOI: 10.1002/jbio.202400277
Pei-Yu Lai, Tai-Yu Shih, Yu-Huan Chang, Chung-Hsing Chang, Wen-Chuan Kuo

Malignant melanoma is the most severe skin cancer with a rising incidence rate. Several noninvasive image techniques and computer-aided diagnosis systems have been developed to help find melanoma in its early stages. However, most previous research utilized dermoscopic images to build a diagnosis model, and only a few used prospective datasets. This study develops and evaluates a convolutional neural network (CNN) for melanoma identification and risk prediction using optical coherence tomography (OCT) imaging of mice skin. Longitudinal tests are performed on four animal models: melanoma mice, dysplastic nevus mice, and their respective controls. The CNN classifies melanoma and healthy tissues with high sensitivity (0.99) and specificity (0.98) and also assigns a risk score to each image based on the probability of melanoma presence, which may facilitate early diagnosis and management of melanoma in clinical settings.

恶性黑色素瘤是最严重的皮肤癌,发病率不断上升。目前已开发出几种无创图像技术和计算机辅助诊断系统,以帮助在早期阶段发现黑色素瘤。然而,以往的研究大多利用皮肤镜图像来建立诊断模型,只有少数研究使用了前瞻性数据集。本研究利用小鼠皮肤的光学相干断层扫描(OCT)成像,开发并评估了用于黑色素瘤识别和风险预测的卷积神经网络(CNN)。对四种动物模型进行了纵向测试:黑色素瘤小鼠、发育不良痣小鼠及其各自的对照组。CNN 对黑色素瘤和健康组织进行分类的灵敏度(0.99)和特异性(0.98)都很高,还能根据黑色素瘤存在的概率为每张图像分配一个风险分数,这可能有助于在临床环境中对黑色素瘤进行早期诊断和管理。
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引用次数: 0
Hybrid Raman and Partial Wave Spectroscopy Microscope for the Characterization of Molecular and Structural Alterations in Tissue 用于表征组织中分子和结构变化的混合拉曼和部分波谱显微镜。
IF 2 3区 物理与天体物理 Q3 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-10-27 DOI: 10.1002/jbio.202400330
Elena Kriukova, Mikhail Mazurenka, Sabrina Marcazzan, Sarah Glasl, Michael Quante, Dieter Saur, Markus Tschurtschenthaler, Gerwin J. Puppels, Dimitris Gorpas, Vasilis Ntziachristos

We present a hybrid Raman spectroscopy (RS) and partial wave spectroscopy (PWS) microscope for the characterization of molecular and structural tissue alterations. The PWS performance was assessed with surface roughness standards, while the Raman performance with a silicon crystal standard. We also validated the system on stomach and intestinal mouse tissues, two closely-related tissue types, and demonstrate that the addition of PWS information improves RS data classification for these tissue types from R2 = 0.892 to R2 = 0.964 (norm of residuals 0.863 and 0.497, respectively). Then, in a proof-of-concept experiment, we show that the hybrid system can detect changes in intestinal tissues harvested from a tumorigenic Villin-Cre, Apcfl/wt mouse. We discuss how the hybrid modality offers new abilities to identify the relative roles of PWS morphological features and Raman molecular fingerprints, possibly allowing for their combination to enhance the study of carcinogenesis and early cancer diagnostics in the future.

我们介绍了一种混合拉曼光谱(RS)和偏振波谱(PWS)显微镜,用于表征分子和组织结构的变化。PWS 性能通过表面粗糙度标准进行评估,而拉曼性能则通过硅晶体标准进行评估。我们还在胃和肠道小鼠组织(两种密切相关的组织类型)上验证了该系统,并证明增加 PWS 信息可将这些组织类型的 RS 数据分类从 R2 = 0.892 提高到 R2 = 0.964(残差规范分别为 0.863 和 0.497)。然后,在概念验证实验中,我们展示了混合系统可以检测从致瘤 Villin-Cre、Apcfl/wt 小鼠身上采集的肠道组织的变化。我们讨论了混合模式如何为确定 PWS 形态特征和拉曼分子指纹的相对作用提供了新的能力,使它们有可能结合起来,在未来加强致癌研究和早期癌症诊断。
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引用次数: 0
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Journal of Biophotonics
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