Benjamin Valderrama, Isabelle Daly, Eoin Gunnigle, Mary C Rea, John Kenny, Mairead Coakley, John F Cryan, Gerard Clarke, Jatin Nagpal
Lactiplantibacillus plantarum is a commensal bacterial species often found within the human gut. To expand our knowledge about this human-associated taxon with potential probiotic properties, here we present the draft genome sequence of Lactiplantibacillus plantarum strain APC2688, isolated from a human fecal sample.
{"title":"High-quality draft genome of <i>Lactiplantibacillus plantarum</i> strain APC2688 isolated from human feces.","authors":"Benjamin Valderrama, Isabelle Daly, Eoin Gunnigle, Mary C Rea, John Kenny, Mairead Coakley, John F Cryan, Gerard Clarke, Jatin Nagpal","doi":"10.1128/mra.00641-24","DOIUrl":"https://doi.org/10.1128/mra.00641-24","url":null,"abstract":"<p><p><i>Lactiplantibacillus plantarum</i> is a commensal bacterial species often found within the human gut. To expand our knowledge about this human-associated taxon with potential probiotic properties, here we present the draft genome sequence of <i>Lactiplantibacillus plantarum</i> strain APC2688, isolated from a human fecal sample.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142470003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lala Ito, Mana Masui, Josephine Galipon, Kazuharu Arakawa
Rhodopseudomonas palustris R1 is a phototrophic, purple, non-sulfur Gram-negative bacterium first isolated from the soils of rice fields, known for its polylactic acid degradability. Here, we present the complete circular genome sequence of this bacterium, spanning 5.32 Mbp and 4,949 protein-coding sequences.
{"title":"Complete genome sequence of polylactic acid degrading <i>Rhodopseudomonas palustris</i> strain R1 isolated from rice field soil.","authors":"Lala Ito, Mana Masui, Josephine Galipon, Kazuharu Arakawa","doi":"10.1128/mra.00814-24","DOIUrl":"https://doi.org/10.1128/mra.00814-24","url":null,"abstract":"<p><p><i>Rhodopseudomonas palustris</i> R1 is a phototrophic, purple, non-sulfur Gram-negative bacterium first isolated from the soils of rice fields, known for its polylactic acid degradability. Here, we present the complete circular genome sequence of this bacterium, spanning 5.32 Mbp and 4,949 protein-coding sequences.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469984","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report on the complete genomes of Gilvimarinus japonicus NBRC 111987T, Halioxenophilus aromaticivorans JCM 19134T, Maricurvus nonylphenolicus JCM 17778T, and Simiduia litorea JCM 19759T, isolated from the sea. Strains JCM 19134T, JCM 17778T, and JCM 19759T contain genes predicted to be polyhydroxyalkanoate-degrading enzymes.
Here, we report the complete genome sequence of deformed wing virus (DWV) isolated from honeybees (Apis mellifera L.) in Iraq, named the Tikrit isolate. The phylogeny revealed that the Tikrit isolate has a close relationship to the Iraqi isolate DWV-Iraq-2023 and related to isolates from France, the United Kingdom, and Israel.
{"title":"Complete genome sequence of deformed wing virus isolated from honeybees (<i>Apis mellifera</i> L.) in Iraq.","authors":"Ali Sadiq, Osamah Alisawi, Mohammed Shakir Mansor","doi":"10.1128/mra.00770-24","DOIUrl":"https://doi.org/10.1128/mra.00770-24","url":null,"abstract":"<p><p>Here, we report the complete genome sequence of deformed wing virus (DWV) isolated from honeybees (<i>Apis mellifera</i> L.) in Iraq, named the Tikrit isolate. The phylogeny revealed that the Tikrit isolate has a close relationship to the Iraqi isolate DWV-Iraq-2023 and related to isolates from France, the United Kingdom, and Israel.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469982","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anacleto M Argayosa, Paul Christian T Gloria, Vina B Argayosa, Mary Nia M Santos
Aeromonas veronii DFR01 was isolated from Nile tilapia (Oreochromis niloticus) infected with motile aeromonad septicemia and has been developed as an oral vaccine. We report a 4.538-Mb draft genome with 99.4% BUSCO and 98.85% CheckM completeness.
{"title":"Draft genome of <i>Aeromonas veronii</i> DFR01, the inactivated bacterial agent in a fish oral vaccine against motile aeromonad septicemia.","authors":"Anacleto M Argayosa, Paul Christian T Gloria, Vina B Argayosa, Mary Nia M Santos","doi":"10.1128/mra.00733-24","DOIUrl":"https://doi.org/10.1128/mra.00733-24","url":null,"abstract":"<p><p><i>Aeromonas veronii</i> DFR01 was isolated from Nile tilapia (<i>Oreochromis niloticus</i>) infected with motile aeromonad septicemia and has been developed as an oral vaccine. We report a 4.538-Mb draft genome with 99.4% BUSCO and 98.85% CheckM completeness.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sydney Millerwise, Michael C Lund, Kara Schimidlin, Simona Kraberger, Noa Pinter-Wollman, Arvind Varsani
Coding complete genomes of an iridovirus (194,403 nts) and two parvoviruses (4,689, 3,764 nts) were identified in social spiders (Stegodyphus dumicola). The iridovirus and one of the parvovirus are most closely related to those from house crickets (Acheta domesticus), whereas the other is most closely related to one from a social spider.
{"title":"Coding complete genomes of an iridovirus and two parvoviruses identified in lab-reared social spiders (<i>Stegodyphus dumicola</i>).","authors":"Sydney Millerwise, Michael C Lund, Kara Schimidlin, Simona Kraberger, Noa Pinter-Wollman, Arvind Varsani","doi":"10.1128/mra.00739-24","DOIUrl":"https://doi.org/10.1128/mra.00739-24","url":null,"abstract":"<p><p>Coding complete genomes of an iridovirus (194,403 nts) and two parvoviruses (4,689, 3,764 nts) were identified in social spiders (<i>Stegodyphus dumicola</i>). The iridovirus and one of the parvovirus are most closely related to those from house crickets (<i>Acheta domesticus</i>), whereas the other is most closely related to one from a social spider.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469969","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Elizabeth Shedroff, Shannon L M Whitmer, Melissa Mobley, Maria Morales-Betoulle, Maria Laura Martin, Julia Brignone, Carina Sen, Yael Nazar, Joel M Montgomery, John D Klena
New World orthohantaviruses are rodent-borne tri-segmented viruses that cause hantavirus cardiopulmonary syndrome in humans in the Americas. Molecular diagnostics for orthohantaviruses can be improved with more sequence data. Reported here are completed genomes for Lechiguanas, Maciel, and Laguna Negra viruses.
{"title":"Completed genome segments of Maciel, Lechiguanas, and Laguna Negra orthohantaviruses.","authors":"Elizabeth Shedroff, Shannon L M Whitmer, Melissa Mobley, Maria Morales-Betoulle, Maria Laura Martin, Julia Brignone, Carina Sen, Yael Nazar, Joel M Montgomery, John D Klena","doi":"10.1128/mra.00441-24","DOIUrl":"https://doi.org/10.1128/mra.00441-24","url":null,"abstract":"<p><p>New World orthohantaviruses are rodent-borne tri-segmented viruses that cause hantavirus cardiopulmonary syndrome in humans in the Americas. Molecular diagnostics for orthohantaviruses can be improved with more sequence data. Reported here are completed genomes for Lechiguanas, Maciel, and Laguna Negra viruses.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469991","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report the complete genome of Sphingobacterium thalpophilum BAA-1094 obtained from the American Type Culture Collection. The genome has one circular chromosome (5.7 Mbp). The rather low average nucleotide identity of 76.5% to the type strain Sphingobacterium thalpophilum DSM 11723 suggests the need for reclassification.
{"title":"Complete genome sequence of <i>Sphingobacterium thalpophilum</i> BAA-1094.","authors":"Barbara I Adaikpoh, Alessandra S Eustáquio","doi":"10.1128/mra.00423-24","DOIUrl":"https://doi.org/10.1128/mra.00423-24","url":null,"abstract":"<p><p>We report the complete genome of <i>Sphingobacterium thalpophilum</i> BAA-1094 obtained from the American Type Culture Collection. The genome has one circular chromosome (5.7 Mbp). The rather low average nucleotide identity of 76.5% to the type strain <i>Sphingobacterium thalpophilum</i> DSM 11723 suggests the need for reclassification.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Glycocaulis abyssi is a dimorphic, prosthecate member of the family Maricaulaceae, order Caulobacterales, in the class Alphaproteobacteria, originally isolated from an abyssal hydrothermal vent. Here, we report the complete genome sequence of type strain LMG 27140T (MCS33T) obtained using Oxford Nanopore technology.
{"title":"Complete genome sequence of <i>Glycocaulis abyssi</i> type strain LMG 27140, a prosthecate bacterium isolated from an abyssal hydrothermal vent.","authors":"Breah LaSarre, Eva M Kierstead, Amelia M Randich","doi":"10.1128/mra.00984-24","DOIUrl":"https://doi.org/10.1128/mra.00984-24","url":null,"abstract":"<p><p><i>Glycocaulis abyssi</i> is a dimorphic, prosthecate member of the family <i>Maricaulaceae</i>, order Caulobacterales, in the class Alphaproteobacteria, originally isolated from an abyssal hydrothermal vent. Here, we report the complete genome sequence of type strain LMG 27140<sup>T</sup> (MCS33<sup>T</sup>) obtained using Oxford Nanopore technology.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anna K Goldkamp, Harish Menghwar, Rohana P Dassanayake, Fred M Tatum, Robert E Briggs, Eduardo Casas
Mannheimia haemolytica is a major bacterial pathogen associated with broncho- and fibrinous pneumonia in ruminants. Here, we report the complete genome sequence of an isolate of serotype A2 M. haemolytica (D95) recovered from a pneumonic ovine lung. The D95 genome has a size of 2.7 Mb and contains 2,720 genes.
{"title":"Complete hybrid genome assembly of <i>Mannheimia haemolytica</i> serotype A2 strain D95 isolated from ovine lung.","authors":"Anna K Goldkamp, Harish Menghwar, Rohana P Dassanayake, Fred M Tatum, Robert E Briggs, Eduardo Casas","doi":"10.1128/mra.00552-24","DOIUrl":"https://doi.org/10.1128/mra.00552-24","url":null,"abstract":"<p><p><i>Mannheimia haemolytica</i> is a major bacterial pathogen associated with broncho- and fibrinous pneumonia in ruminants. Here, we report the complete genome sequence of an isolate of serotype A2 <i>M. haemolytica</i> (D95) recovered from a pneumonic ovine lung. The D95 genome has a size of 2.7 Mb and contains 2,720 genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}