Microbiology Resource Announcements最新文献

Phytopathogens with multi-drug resistance are emerging frequently, resulting in various disease outbreaks. Hence, exploring new antimicrobials is urgent. Here, we present the draft genome sequence of Streptomyces carpaticus FH1 strain, with the potential to produce various antimicrobial compounds. Genomic annotation revealed various genes encoding kanamycin, ectoine, and naringerin.

A draft genome was generated for a strain of Mycobacterium closely related to Mycobacterium sp. ENV421 isolated in vitro from plants of smooth cordgrass germinated in vitro from seeds collected in a salt marsh in Cape Cod (USA). Genomic DNA was sequenced using paired-end Illumina technologies. Here, we report the classification and genome statistics of Mycobacterium sp. SA01. A strain of Mycobacterium was isolated from seedlings of Sporobolus alterniflorus germinated under in vitro conditions after surface sterilization. The seeds were collected in Little Swippewisett Marsh, Barnstable, MA, USA.

The genome of Ochrobactrum sp. isolated from agricultural soil polluted with the herbicide glyphosate is reported. The genome size is 5.48 Mb with an average G + C content of 56.3%. This genomic data could contribute to a better understanding of biochemistry and regulatory mechanisms of microbial degradation of glyphosate and 2-aminoethylphosphonic acid.

mpactR automates pre-processing of liquid chromatography-tandem mass spectrometry (LC-MS/MS) data from microbiological samples to correct mispicked peaks, resolve inter-sample variation in abundance across technical replicates, account for in-source ion fragmentation, and remove background noise to yield high-quality mass spectrometry features. The package is available through CRAN and GitHub.

Here, we report the genome sequence of Burkholderia ambifaria BCC0191, a biopesticide originally isolated from the barley rhizosphere. The genome was assembled using an Illumina-Nanopore hybrid approach and consisted of 7.62 Mbp distributed across three replicons. Several specialized metabolite biosynthetic gene clusters, including those known to be active in biocontrol, were identified.

Leptolyngbya phage Dor1 was induced by mitomycin C from a fishpond and was isolated on Leptolyngbya boryana IU 594. The 41,522-bp genome of Leptolyngbya phage Dor1 has 93.77% intergenomic similarity with Leptolyngbya phage LPP-1; however, unlike LPP-1, Dor1 carries an HNH endonuclease in its DNA polymerase gene.

Bovine tuberculosis is an important zoonotic infectious disease that presents a risk to human health, livestock, and wildlife. We report the complete genome sequence of a new Mycobacterium bovis strain that caused a bovine tuberculosis outbreak on a cattle farm in Saskatchewan, Canada, in 2023.

We report two coding-complete genome sequences of porcine reproductive and respiratory syndrome virus 2 from field clinical samples obtained in 2021 (BA2021012A) and 2023 (ME20230008B-2) from the Philippines. BA2021012A (15,388 bp) is classified as a lineage L8C strain while ME20230008B-2 (15,513 bp) is a vaccine-like strain in lineage L7.

The zoonotic pathogen Capnocytophaga canimorsus is part of the oral microbiome of dogs and cats. We report the genome sequence of strain KM3195_24, isolated from a red fox. It has a circular genome of 2,718,701 bp with a G + C content of 36%, 2,419 CDS, 3 rRNA operons, and 45 tRNAs.

We present the genome of Listeria monocytogenes BDSA isolated from ready-to-eat (RTE) meat collected in Dhaka, Bangladesh. The genome displays the Listeria pathogenicity island 1 and virulence, stress response, and antimicrobial resistance genes. It was phylogenetically classified as ST7, and clustered with serotype 1/2a belonging to lineage II.