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Complete genome sequence of a high-risk Escherichia coli ST10 isolated from avian feces in Pakistan. 从巴基斯坦禽类粪便中分离出的高风险大肠杆菌 ST10 的完整基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-09 DOI: 10.1128/mra.00769-24
Jung Hun Lee, Abdul Rauf Tareen, Nam-Hoon Kim, Chanyeong Jeong, Byeonghyeon Kang, Gwangje Lee, Dae-Wi Kim, Rabaab Zahra, Sang Hee Lee

We present the complete genome sequence of Escherichia coli strain PEC1009 isolated from avian feces in Pakistan. The strain belongs to sequence type (ST) 10, a high-risk clone. The strain possesses two plasmids, and various plasmid-borne antibiotic resistance genes and chromosome-borne virulence factor genes were identified in its genome.

我们公布了从巴基斯坦禽类粪便中分离出的大肠埃希氏菌株 PEC1009 的完整基因组序列。该菌株属于序列类型(ST)10,是一种高风险克隆。该菌株拥有两个质粒,在其基因组中发现了多种质粒携带的抗生素耐药基因和染色体携带的毒力因子基因。
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引用次数: 0
Complete genome sequence of a potentially probiotic cheese isolate Lactiplantibacillus plantarum LP140 from the Nordbiotic collection. 来自 Nordbiotic 菌种库的潜在益生菌奶酪分离株 Lactiplantibacillus plantarum LP140 的完整基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-08 DOI: 10.1128/mra.00606-24
Agnieszka Szczepankowska, Bożena Cukrowska, Tamara Aleksandrzak-Piekarczyk

We report the complete genome sequence of Lactiplantibacillus plantarum LP140, a cheese isolate from the Nordbiotic collection, comprising 3,371,266 bp with 44.4% GC content. Our data provide insight into the potential of LP140 for use as a probiotic strain.

我们报告了植物乳杆菌(Lactiplantibacillus plantarum LP140)的完整基因组序列,它是从诺德生物(Nordbiotic)的奶酪分离菌株中分离出来的,共有 3,371,266 bp,GC 含量为 44.4%。我们的数据有助于深入了解 LP140 作为益生菌株的潜力。
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引用次数: 0
Draft genomes of 10 Vibrio cholerae isolates collected in Sudan in 2019. 2019 年在苏丹采集的 10 个霍乱弧菌分离株的基因组草案。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-09 DOI: 10.1128/mra.00376-24
Muatsim Ahmed Mohammed Adam, Sam Sims, Amina Ahmed Awad, Luke Meredith, Basmat Abd Elhafeez Mohamed Ahmed, Rayan Adel Abdelrahman Ahmed, Hageer Alnazeer Ibrahim Saeed, Mohamed Abdalhafiz Alkhidir, Muna Idris Ahmed Abdelgadir, Hanan Ali Mohamed, Lubna Ahmed Badi, Yaiza Gutierrez Vazquez, Babak Afrough, Leena Inamdar, Angelika Kritz, Amal Barakat, Elamin Abualas, Shahinaz Ahmed Bedri

This report presents the first genomes from positive cases of cholera in Sudan. Genomic analysis of 10 Vibrio cholerae isolates, profiled as serogroup O1, reveals evidence of antimicrobial resistance genes and a 139-kb IncC plasmid with 99.74% identity to the multidrug-resistant plasmid pCNRVC190243 previously reported in Yemen and Lebanon.

本报告首次展示了苏丹霍乱阳性病例的基因组。对 10 个霍乱弧菌分离物进行的基因组分析显示,这些分离物为 O1 血清群,其中有抗菌药耐药性基因和一个 139-kb IncC 质粒,与之前在也门和黎巴嫩报道的耐多药质粒 pCNRVC190243 有 99.74% 的相同性。
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引用次数: 0
A complete genome sequence of Pseudomonas amygdali pathovar lachrymans YM7902. 杏仁假单胞菌(Pseudomonas amygdali pathovar lachrymans YM7902)的完整基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-22 DOI: 10.1128/mra.00682-24
Audrey Sweten, David Baltrus

Pseudomonas amygdali pathovar lachrymans YM7902 was originally isolated as a pathogen of cucumber in Japan. Here, we report a nearly complete genome sequence for this strain, assembled using a hybrid approach combining Illumina paired-end reads and longer reads sequenced using technology from Oxford Nanopore.

杏仁假单胞菌(Pseudomonas amygdali pathovar lachrymans YM7902)最初是作为黄瓜病原体在日本分离出来的。在此,我们报告了该菌株的近乎完整的基因组序列,该序列是利用 Illumina 成对末端读数与牛津纳米孔技术测序的较长读数相结合的混合方法组装而成的。
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引用次数: 0
Complete genome sequence of Bacillus megaterium strain DY294, a strain of Bacillus isolated from Arshan Resort in Hulunbuir. 从呼伦贝尔阿尔山度假村分离出的巨大芽孢杆菌菌株 DY294 的完整基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-21 DOI: 10.1128/mra.00479-24
Caixia Deng, Yan Zhao, Mandlaa Mandlaa, Yingsong Chen, Dezhi Yang

The Arshan Resort is a unique mineral spring whose water is used in traditional Mongolian medicine to treat many kinds of diseases. Here, we report the genome sequence of Bacillus megaterium Strain DY294, a strain isolated from the Arshan water collected from Hulunbuir (117°40' E, 48°54' N), China.

阿尔山度假村是一处独特的矿泉,其泉水被蒙古传统医学用于治疗多种疾病。在此,我们报告了从中国呼伦贝尔(东经 117°40',北纬 48°54')采集的阿尔山矿泉水中分离出的巨大芽孢杆菌 DY294 菌株的基因组序列。
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引用次数: 0
Draft genome sequences of four plant-associated free-living diazotrophs isolated from the rhizosphere of Malian tomato. 从马里番茄根瘤中分离出的四种与植物相关的自由生活重氮营养体的基因组序列草案。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-22 DOI: 10.1128/mra.00568-24
Gabriele Bellotti, Paul Sanou, Piero Sunzini, Vincenzo Tabaglio, Pier Sandro Cocconcelli, Edoardo Puglisi

This announcement reports the draft genome sequences of two Azospirillum argentinense and two Azotobacter salinestris isolated from the rhizosphere of a tomato plant grown in a village in the Republic of Mali. These strains are plant growth-promoting rhizobacteria and are highly valuable to agriculture for their ability to fix atmospheric nitrogen.

本公告报告了从马里共和国一个村庄种植的西红柿根瘤菌中分离出的两株阿根廷氮螺旋体(Azospirillum argentinense)和两株盐渍氮杆菌(Azotobacter salinestris)的基因组序列草案。这些菌株是促进植物生长的根瘤菌,具有固定大气氮的能力,对农业具有很高的价值。
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引用次数: 0
High-quality draft genome of Lactiplantibacillus plantarum strain APC2688 isolated from human feces. 从人类粪便中分离出的植物乳杆菌菌株 APC2688 的高质量基因组草案。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-14 DOI: 10.1128/mra.00641-24
Benjamin Valderrama, Isabelle Daly, Eoin Gunnigle, Mary C Rea, John Kenny, Mairead Coakley, John F Cryan, Gerard Clarke, Jatin Nagpal

Lactiplantibacillus plantarum is a commensal bacterial species often found within the human gut. To expand our knowledge about this human-associated taxon with potential probiotic properties, here we present the draft genome sequence of Lactiplantibacillus plantarum strain APC2688, isolated from a human fecal sample.

植物乳杆菌(Lactiplantibacillus plantarum)是一种常见于人体肠道的共生细菌。为了扩大我们对这种具有潜在益生特性的人类相关类群的了解,我们在此展示了从人类粪便样本中分离出来的植物乳杆菌菌株 APC2688 的基因组序列草案。
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引用次数: 0
Whole-genome sequence of Bacillus paralicheniformis strain R243 isolated from rice (Oryza sativa L.) roots. 从水稻(Oryza sativa L.)根中分离出的 Paralicheniformis Bacillus 菌株 R243 的全基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-10-24 DOI: 10.1128/mra.00879-24
Vladimir K Chebotar, Maria S Gancheva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya

We isolated an endophytic strain R243 and sequenced its genome using the NextSeq 1000 (Illumina) sequencing platform. The sequenced genome contains 4,478 protein-coding genes with a mean GC content of 45.56%. The strain R243 was identified as Bacillus paralicheniformis. Gene clusters involved in the synthesis of biocontrol substances were identified.

我们分离了内生菌株 R243,并使用 NextSeq 1000(Illumina)测序平台对其基因组进行了测序。测序的基因组包含 4478 个蛋白质编码基因,平均 GC 含量为 45.56%。菌株 R243 被鉴定为副嗜血杆菌(Bacillus paralicheniformis)。确定了参与合成生物防治物质的基因簇。
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引用次数: 0
Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere. 从杨树根瘤中分离出的杨树微生物门成员 Luteolibacter sp.
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-09-30 DOI: 10.1128/mra.00801-24
Sora Imai, Benjamin Allen, Leah H Hochanadel, William G Alexander, Robert W Cottingham, Christopher W Schadt, Dale A Pelletier, Mircea Podar

Luteolibacter sp. strain Populi is a bacterium from the phylum Verrucomicrobiota, isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa, from the Cascade mountains in Washington. Its 6.6-Mb chromosome was completely sequenced using Oxford Nanopore long-read sequencing and is predicted to encode 5,301 proteins and 60 RNAs.

Luteolibacter sp. 菌株 Populi 是一种从华盛顿州喀斯喀特山脉的黑木棉树根瘤中分离出来的瘤胃微生物门细菌。利用牛津纳米孔长读数测序技术对其 6.6-Mb 的染色体进行了完整测序,预计可编码 5,301 种蛋白质和 60 种 RNA。
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引用次数: 0
Draft genome sequence of Raoultella terrigena strain Ech2A causing soft rot on sweet pepper (Capsicum annuum). 导致甜椒(Capsicum annuum)软腐病的 Raoultella terrigena 菌株 Ech2A 的基因组序列草案。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2024-11-12 Epub Date: 2024-09-27 DOI: 10.1128/mra.00159-24
J Sandoval-Gutiérrez, D Cubero-Agüero, L Brenes-Guillén, F Galiano-Murillo, D Vidaurre-Barahona, L Uribe-Lorío

We report the draft genome sequence of Raoultella terrigena strain Ech2A causing soft rot on pepper. To verify pathogenicity, Koch's postulates were performed on sweet pepper. Genes encoding pectinolytic enzymes were found in the genome.

我们报告了引起辣椒软腐病的 Raoultella terrigena 菌株 Ech2A 的基因组序列草案。为了验证致病性,我们在甜椒上进行了科赫推定。在基因组中发现了编码果胶溶解酶的基因。
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引用次数: 0
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