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Genome sequences of two Klebsiella phages isolated from wastewater treatment samples that infect a clinical Klebsiella isolate. 从感染临床克雷伯菌分离物的废水处理样品中分离的两种克雷伯菌噬菌体的基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-12-17 DOI: 10.1128/MRA.00836-23
Jessica M Lewis, Daniel K Arens, Abraham Quaye, Diana G Calvopina-Chavez, Kyson T Jensen, Ashley K Miller, Melinda M Moss, M Elizabeth Warren, Justina P Tavana, Steven M Johnson, Julianne H Grose

We announce the complete genomes of Klebsiella phages ValerieMcCarty03 and ValerieMcCarty04 isolated from wastewater treatment plant samples that infect a multidrug-resistant Klebsiella oxytoca clinical isolate. These phages belong to the T4-like cluster and fall within the Jiaodavirus genus.

我们宣布从感染多药耐药克雷伯菌临床分离物的废水处理厂样本中分离出克雷伯菌噬菌体valeriemcarty03和valeriemcarty04的完整基因组。这些噬菌体属于t4样簇,属于胶达病毒属。
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引用次数: 0
Draft genome sequence of Zygosaccharomyces siamensis kiy1 isolated from unpasteurized honey. 从未消化的蜂蜜中分离出的暹罗酵母菌 kiy1 基因组序列草案。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-11-27 DOI: 10.1128/mra.00725-24
Kan Iwata, Daisuke Minegishi, Mayumi Maeda, Kenji Maehashi, Jun Yoshikawa

In this study, a draft genome sequence of Zygosaccharomyces siamensis kiy1 isolated from unpasteurized honey in Japan was analyzed. This strain was reported to be a promising arabitol-producing strain, and this report contributes to a better understanding of arabitol production in yeasts.

本研究分析了从日本未消毒蜂蜜中分离出的暹罗酵母菌(Zygosaccharomyces siamensis kiy1)的基因组序列草案。据报道,该菌株是一种很有潜力的阿拉伯糖醇生产菌株,本报告有助于更好地了解酵母菌的阿拉伯糖醇生产情况。
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引用次数: 0
Genome sequences of three Streptomyces isolated from the soil of soybean field in Tsuruoka, Japan. 从日本鹤冈大豆田土壤中分离出的三种链霉菌的基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-11-27 DOI: 10.1128/mra.01059-24
Ryuki Sato, Rena Saito, Tomoki Takeda, Nobuhiro Sasaki, Satoshi Yuzawa, Natsumi Saito, Kazuharu Arakawa

Streptomyces are Gram-positive bacteria typically found in the soil, with very large genomes and high GC content, and are known to produce a wide range of secondary metabolites. We isolated and sequenced the genomes of three Streptomyces bacteria from the soil of soybean field in Tsuruoka, Japan.

链霉菌是典型存在于土壤中的革兰氏阳性细菌,基因组非常大,GC 含量高,已知能产生多种次级代谢产物。我们从日本鹤冈大豆田的土壤中分离出了三种链霉菌,并对其基因组进行了测序。
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引用次数: 0
Complete genomes of Salmonella and draft genome of Escherichia isolates from oysters collected in Canada. 从加拿大采集的牡蛎中分离出的沙门氏菌的完整基因组和埃希氏菌的基因组草案。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-12-13 DOI: 10.1128/mra.00585-24
Bojan Shutinoski, Annika Flint, Sandeep Tamber, Kelly Weedmark, Swapan Banerjee

Human enteric pathogens in fresh uncooked seafood are of concern to human health. Here, we report the complete genomes of bacteria not commonly found in freshly harvested seafood, two Salmonella Typhimurium strains and one draft Escherichia coli genome, isolated from harvested oysters grown in Canada.

未经烹饪的新鲜海产品中的人类肠道病原体关系到人类健康。在这里,我们报告了从加拿大生长的收获牡蛎中分离出的新鲜海产品中不常见的细菌的完整基因组,包括两株鼠伤寒沙门氏菌和一个大肠杆菌基因组草案。
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引用次数: 0
Genome sequences of Staphylococcus aureus RN4220. 金黄色葡萄球菌RN4220基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-12-16 DOI: 10.1128/mra.00462-24
Eon-Min Ko, Seonghan Kim

In this study, we present whole genome sequences of Staphylococcus aureus RN4220. Using PacBio DNA sequencing and de novo assembly, we obtained a single contig of 2,697,647 bp, which includes 2,652 predicted genes comprising protein-coding sequences, tRNAs, and rRNAs.

在这项研究中,我们提出了金黄色葡萄球菌RN4220的全基因组序列。通过PacBio DNA测序和从头组装,我们获得了一个2,697,647 bp的序列,其中包括2,652个预测基因,包括蛋白质编码序列、trna和rnas。
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引用次数: 0
RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol. 在β-5-连接的芳香二聚体脱氢二硝基醇上生长的Novosphingobium aromaticivorans的RB-TnSeq条形码丰度数据集。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-12-12 DOI: 10.1128/mra.00844-24
Fletcher Metz, Marco N Allemann, Joshua K Michener, Kevin S Myers, Fachuang Lu, Daniel R Noguera, Timothy J Donohue

A randomly barcoded transposon insertion sequencing (RB-TnSeq) library of Novosphingobium aromaticivorans DSM12444 was grown in media containing either glucose or the β-5-linked aromatic dimer dehydrodiconiferyl alcohol (DC-A) as the sole carbon source. The cultures were grown to saturation and then sequenced, yielding the barcode abundance data sets presented here.

将Novosphingobium aromaticivorans DSM12444的随机转座子插入测序(RB-TnSeq)文库培养在以葡萄糖或β-5连接的芳香二聚体脱氢二硝基醇(DC-A)为唯一碳源的培养基中。培养物生长至饱和,然后测序,得到这里展示的条形码丰度数据集。
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引用次数: 0
Complete genome sequence of an Escherichia coli ST7366 strain harboring an extended-spectrum β-lactamase gene isolated from sewage water in Pakistan. 从巴基斯坦污水中分离出一株含有广谱β-内酰胺酶基因的大肠杆菌ST7366菌株的全基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-12-12 DOI: 10.1128/mra.00793-24
Jung Hun Lee, Saba Yasmin, Nam-Hoon Kim, Chanyeong Jeong, Byeonghyeon Kang, Gwangje Lee, Dae-Wi Kim, Rabaab Zahra, Sang Hee Lee

We announce the complete genome of Escherichia coli strain PEC1003 belonging to ST7366, isolated from sewage water in Pakistan. This strain harbored a plasmid carrying various antibiotic resistance genes, including extended-spectrum β-lactamase (ESBL), blaCTX-M-15, emphasizing the management and surveillance of ESBL-producing E. coli in the environment of developing countries.

我们宣布从巴基斯坦污水中分离出属于ST7366的大肠杆菌菌株PEC1003的完整基因组。该菌株携带多种抗生素耐药基因的质粒,包括广谱β-内酰胺酶(ESBL), blaCTX-M-15,强调在发展中国家环境中对产生ESBL的大肠杆菌的管理和监测。
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引用次数: 0
Complete genome sequences of six coliphages isolated from local water systems in the Philippines. 从菲律宾当地水系统分离的6个噬菌体的完整基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-11-29 DOI: 10.1128/mra.00859-24
Emilia Andrea V Sabban, Adonis N Eclipse, Stephen Kyle C Arcan, Dexter Bryan L Esliza, Paul Jeremy C Lanete, Lindley C Susi, Gelito Joseph M Sikat

Complete genome sequences of six coliphages (genomic size: 87-347 Kbp; GC content: 35.10%-45.27%) belonging to the Felixounavirus, Tequintavirus, and Asteriusvirus genera were isolated from Philippine wastewater facilities and drainage systems. These phages offer potential for development as diagnostic and therapeutic tools for food and water safety.

6个噬菌体全基因组序列(基因组大小:87-347 Kbp;GC含量:35.10% ~ 45.27%)从菲律宾污水设施和排水系统中分离出费利克斯纳病毒、Tequintavirus和Asteriusvirus属。这些噬菌体具有发展成为食品和水安全诊断和治疗工具的潜力。
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引用次数: 0
Draft genome of a human gut-derived Blautia sp. that ameliorates colitis and colitis-associated sociability deficits in mice. 绘制人类肠道衍生的Blautia菌的基因组,该菌可改善小鼠结肠炎和结肠炎相关的社交缺陷。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-16 Epub Date: 2024-11-29 DOI: 10.1128/mra.00726-24
Michaela A Murphy, D Garrett Brown, Rickesha S Bell, Allison M Weis, Logan A Barrios, W Zac Stephens, June L Round

Blautia is a genus of anaerobic, gram-positive bacteria commonly found in mammalian gastrointestinal tracts. Yet, how variations among different Blautia strains can impact host health is poorly understood. We present a Blautia sp. genome isolated from human feces whose supplementation to mice can ameliorate colitis severity and associated sociability deficits.

Blautia是一种厌氧革兰氏阳性细菌属,常见于哺乳动物胃肠道。然而,人们对不同蓝菌菌株之间的差异如何影响宿主健康知之甚少。我们提出了从人类粪便中分离的Blautia sp基因组,将其补充给小鼠可以改善结肠炎的严重程度和相关的社交缺陷。
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引用次数: 0
Complete genome sequences of mycobacteriophages JayJay and Rinkes. 噬菌体 JayJay 和 Rinkes 的完整基因组序列。
IF 0.7 Q4 MICROBIOLOGY Pub Date : 2025-01-15 DOI: 10.1128/mra.01199-24
Dale Liebenberg, Nday L Sungu, Edith E Machowski, Christopher S Ealand, Bavesh D Kana

The complete genome sequences were determined for two mycobacteriophages isolated from Mycobacterium smegmatis mc2155. JayJay, a myoviral bacteriophage from cluster C1, encodes 234 putative genes, 32 tRNAs, and 1 tmRNA. Rinkes, a siphoviral bacteriophage from cluster B9, harbors a smaller genome encoding 93 putative genes.

测定了耻垢分枝杆菌mc2155中分离的两个分枝杆菌噬菌体的全基因组序列。来自集群C1的肌病毒噬菌体JayJay编码234个推测基因、32个trna和1个tmRNA。Rinkes是一种来自B9集群的虹膜病毒噬菌体,它拥有一个较小的基因组,编码93个假定的基因。
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引用次数: 0
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