Pub Date : 2024-11-12Epub Date: 2024-10-09DOI: 10.1128/mra.00769-24
Jung Hun Lee, Abdul Rauf Tareen, Nam-Hoon Kim, Chanyeong Jeong, Byeonghyeon Kang, Gwangje Lee, Dae-Wi Kim, Rabaab Zahra, Sang Hee Lee
We present the complete genome sequence of Escherichia coli strain PEC1009 isolated from avian feces in Pakistan. The strain belongs to sequence type (ST) 10, a high-risk clone. The strain possesses two plasmids, and various plasmid-borne antibiotic resistance genes and chromosome-borne virulence factor genes were identified in its genome.
{"title":"Complete genome sequence of a high-risk <i>Escherichia coli</i> ST10 isolated from avian feces in Pakistan.","authors":"Jung Hun Lee, Abdul Rauf Tareen, Nam-Hoon Kim, Chanyeong Jeong, Byeonghyeon Kang, Gwangje Lee, Dae-Wi Kim, Rabaab Zahra, Sang Hee Lee","doi":"10.1128/mra.00769-24","DOIUrl":"10.1128/mra.00769-24","url":null,"abstract":"<p><p>We present the complete genome sequence of <i>Escherichia coli</i> strain PEC1009 isolated from avian feces in Pakistan. The strain belongs to sequence type (ST) 10, a high-risk clone. The strain possesses two plasmids, and various plasmid-borne antibiotic resistance genes and chromosome-borne virulence factor genes were identified in its genome.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142391806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
We report the complete genome sequence of Lactiplantibacillus plantarum LP140, a cheese isolate from the Nordbiotic collection, comprising 3,371,266 bp with 44.4% GC content. Our data provide insight into the potential of LP140 for use as a probiotic strain.
我们报告了植物乳杆菌(Lactiplantibacillus plantarum LP140)的完整基因组序列,它是从诺德生物(Nordbiotic)的奶酪分离菌株中分离出来的,共有 3,371,266 bp,GC 含量为 44.4%。我们的数据有助于深入了解 LP140 作为益生菌株的潜力。
{"title":"Complete genome sequence of a potentially probiotic cheese isolate <i>Lactiplantibacillus plantarum</i> LP140 from the Nordbiotic collection.","authors":"Agnieszka Szczepankowska, Bożena Cukrowska, Tamara Aleksandrzak-Piekarczyk","doi":"10.1128/mra.00606-24","DOIUrl":"10.1128/mra.00606-24","url":null,"abstract":"<p><p>We report the complete genome sequence of <i>Lactiplantibacillus plantarum</i> LP140, a cheese isolate from the Nordbiotic collection, comprising 3,371,266 bp with 44.4% GC content. Our data provide insight into the potential of LP140 for use as a probiotic strain.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142391807","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-09DOI: 10.1128/mra.00376-24
Muatsim Ahmed Mohammed Adam, Sam Sims, Amina Ahmed Awad, Luke Meredith, Basmat Abd Elhafeez Mohamed Ahmed, Rayan Adel Abdelrahman Ahmed, Hageer Alnazeer Ibrahim Saeed, Mohamed Abdalhafiz Alkhidir, Muna Idris Ahmed Abdelgadir, Hanan Ali Mohamed, Lubna Ahmed Badi, Yaiza Gutierrez Vazquez, Babak Afrough, Leena Inamdar, Angelika Kritz, Amal Barakat, Elamin Abualas, Shahinaz Ahmed Bedri
This report presents the first genomes from positive cases of cholera in Sudan. Genomic analysis of 10 Vibrio cholerae isolates, profiled as serogroup O1, reveals evidence of antimicrobial resistance genes and a 139-kb IncC plasmid with 99.74% identity to the multidrug-resistant plasmid pCNRVC190243 previously reported in Yemen and Lebanon.
{"title":"Draft genomes of 10 <i>Vibrio cholerae</i> isolates collected in Sudan in 2019.","authors":"Muatsim Ahmed Mohammed Adam, Sam Sims, Amina Ahmed Awad, Luke Meredith, Basmat Abd Elhafeez Mohamed Ahmed, Rayan Adel Abdelrahman Ahmed, Hageer Alnazeer Ibrahim Saeed, Mohamed Abdalhafiz Alkhidir, Muna Idris Ahmed Abdelgadir, Hanan Ali Mohamed, Lubna Ahmed Badi, Yaiza Gutierrez Vazquez, Babak Afrough, Leena Inamdar, Angelika Kritz, Amal Barakat, Elamin Abualas, Shahinaz Ahmed Bedri","doi":"10.1128/mra.00376-24","DOIUrl":"10.1128/mra.00376-24","url":null,"abstract":"<p><p>This report presents the first genomes from positive cases of cholera in Sudan. Genomic analysis of 10 <i>Vibrio cholerae</i> isolates, profiled as serogroup O1, reveals evidence of antimicrobial resistance genes and a 139-kb IncC plasmid with 99.74% identity to the multidrug-resistant plasmid pCNRVC190243 previously reported in Yemen and Lebanon.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142391810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-22DOI: 10.1128/mra.00682-24
Audrey Sweten, David Baltrus
Pseudomonas amygdali pathovar lachrymans YM7902 was originally isolated as a pathogen of cucumber in Japan. Here, we report a nearly complete genome sequence for this strain, assembled using a hybrid approach combining Illumina paired-end reads and longer reads sequenced using technology from Oxford Nanopore.
{"title":"A complete genome sequence of <i>Pseudomonas amygdali</i> pathovar <i>lachrymans</i> YM7902.","authors":"Audrey Sweten, David Baltrus","doi":"10.1128/mra.00682-24","DOIUrl":"10.1128/mra.00682-24","url":null,"abstract":"<p><p><i>Pseudomonas amygdali</i> pathovar <i>lachrymans</i> YM7902 was originally isolated as a pathogen of cucumber in Japan. Here, we report a nearly complete genome sequence for this strain, assembled using a hybrid approach combining Illumina paired-end reads and longer reads sequenced using technology from Oxford Nanopore.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-21DOI: 10.1128/mra.00479-24
Caixia Deng, Yan Zhao, Mandlaa Mandlaa, Yingsong Chen, Dezhi Yang
The Arshan Resort is a unique mineral spring whose water is used in traditional Mongolian medicine to treat many kinds of diseases. Here, we report the genome sequence of Bacillus megaterium Strain DY294, a strain isolated from the Arshan water collected from Hulunbuir (117°40' E, 48°54' N), China.
{"title":"Complete genome sequence of <i>Bacillus megaterium</i> strain DY294, a strain of <i>Bacillus</i> isolated from Arshan Resort in Hulunbuir.","authors":"Caixia Deng, Yan Zhao, Mandlaa Mandlaa, Yingsong Chen, Dezhi Yang","doi":"10.1128/mra.00479-24","DOIUrl":"10.1128/mra.00479-24","url":null,"abstract":"<p><p>The Arshan Resort is a unique mineral spring whose water is used in traditional Mongolian medicine to treat many kinds of diseases. Here, we report the genome sequence of <i>Bacillus megaterium</i> Strain DY294, a strain isolated from the Arshan water collected from Hulunbuir (117°40' E, 48°54' N), China.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469972","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This announcement reports the draft genome sequences of two Azospirillum argentinense and two Azotobacter salinestris isolated from the rhizosphere of a tomato plant grown in a village in the Republic of Mali. These strains are plant growth-promoting rhizobacteria and are highly valuable to agriculture for their ability to fix atmospheric nitrogen.
{"title":"Draft genome sequences of four plant-associated free-living diazotrophs isolated from the rhizosphere of Malian tomato.","authors":"Gabriele Bellotti, Paul Sanou, Piero Sunzini, Vincenzo Tabaglio, Pier Sandro Cocconcelli, Edoardo Puglisi","doi":"10.1128/mra.00568-24","DOIUrl":"10.1128/mra.00568-24","url":null,"abstract":"<p><p>This announcement reports the draft genome sequences of two <i>Azospirillum argentinense</i> and two <i>Azotobacter salinestris</i> isolated from the rhizosphere of a tomato plant grown in a village in the Republic of Mali. These strains are plant growth-promoting rhizobacteria and are highly valuable to agriculture for their ability to fix atmospheric nitrogen.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142469997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-14DOI: 10.1128/mra.00641-24
Benjamin Valderrama, Isabelle Daly, Eoin Gunnigle, Mary C Rea, John Kenny, Mairead Coakley, John F Cryan, Gerard Clarke, Jatin Nagpal
Lactiplantibacillus plantarum is a commensal bacterial species often found within the human gut. To expand our knowledge about this human-associated taxon with potential probiotic properties, here we present the draft genome sequence of Lactiplantibacillus plantarum strain APC2688, isolated from a human fecal sample.
{"title":"High-quality draft genome of <i>Lactiplantibacillus plantarum</i> strain APC2688 isolated from human feces.","authors":"Benjamin Valderrama, Isabelle Daly, Eoin Gunnigle, Mary C Rea, John Kenny, Mairead Coakley, John F Cryan, Gerard Clarke, Jatin Nagpal","doi":"10.1128/mra.00641-24","DOIUrl":"10.1128/mra.00641-24","url":null,"abstract":"<p><p><i>Lactiplantibacillus plantarum</i> is a commensal bacterial species often found within the human gut. To expand our knowledge about this human-associated taxon with potential probiotic properties, here we present the draft genome sequence of <i>Lactiplantibacillus plantarum</i> strain APC2688, isolated from a human fecal sample.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142470003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-24DOI: 10.1128/mra.00879-24
Vladimir K Chebotar, Maria S Gancheva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya
We isolated an endophytic strain R243 and sequenced its genome using the NextSeq 1000 (Illumina) sequencing platform. The sequenced genome contains 4,478 protein-coding genes with a mean GC content of 45.56%. The strain R243 was identified as Bacillus paralicheniformis. Gene clusters involved in the synthesis of biocontrol substances were identified.
{"title":"Whole-genome sequence of <i>Bacillus paralicheniformis</i> strain R243 isolated from rice (<i>Oryza sativa</i> L.) roots.","authors":"Vladimir K Chebotar, Maria S Gancheva, Oksana V Keleinikova, Maria E Baganova, Alexander N Zaplatkin, Veronika N Pishchik, Elena P Chizhevskaya","doi":"10.1128/mra.00879-24","DOIUrl":"10.1128/mra.00879-24","url":null,"abstract":"<p><p>We isolated an endophytic strain R243 and sequenced its genome using the NextSeq 1000 (Illumina) sequencing platform. The sequenced genome contains 4,478 protein-coding genes with a mean GC content of 45.56%. The strain R243 was identified as <i>Bacillus paralicheniformis</i>. Gene clusters involved in the synthesis of biocontrol substances were identified.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142504036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-09-30DOI: 10.1128/mra.00801-24
Sora Imai, Benjamin Allen, Leah H Hochanadel, William G Alexander, Robert W Cottingham, Christopher W Schadt, Dale A Pelletier, Mircea Podar
Luteolibacter sp. strain Populi is a bacterium from the phylum Verrucomicrobiota, isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa, from the Cascade mountains in Washington. Its 6.6-Mb chromosome was completely sequenced using Oxford Nanopore long-read sequencing and is predicted to encode 5,301 proteins and 60 RNAs.
{"title":"Complete genome sequence of <i>Luteolibacter</i> sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the <i>Populus trichocarpa</i> rhizosphere.","authors":"Sora Imai, Benjamin Allen, Leah H Hochanadel, William G Alexander, Robert W Cottingham, Christopher W Schadt, Dale A Pelletier, Mircea Podar","doi":"10.1128/mra.00801-24","DOIUrl":"10.1128/mra.00801-24","url":null,"abstract":"<p><p><i>Luteolibacter</i> sp. strain Populi is a bacterium from the phylum Verrucomicrobiota, isolated from the rhizosphere of a black cottonwood tree, <i>Populus trichocarpa</i>, from the Cascade mountains in Washington. Its 6.6-Mb chromosome was completely sequenced using Oxford Nanopore long-read sequencing and is predicted to encode 5,301 proteins and 60 RNAs.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-09-27DOI: 10.1128/mra.00159-24
J Sandoval-Gutiérrez, D Cubero-Agüero, L Brenes-Guillén, F Galiano-Murillo, D Vidaurre-Barahona, L Uribe-Lorío
We report the draft genome sequence of Raoultella terrigena strain Ech2A causing soft rot on pepper. To verify pathogenicity, Koch's postulates were performed on sweet pepper. Genes encoding pectinolytic enzymes were found in the genome.
{"title":"Draft genome sequence of <i>Raoultella terrigena</i> strain Ech2A causing soft rot on sweet pepper (<i>Capsicum annuum</i>).","authors":"J Sandoval-Gutiérrez, D Cubero-Agüero, L Brenes-Guillén, F Galiano-Murillo, D Vidaurre-Barahona, L Uribe-Lorío","doi":"10.1128/mra.00159-24","DOIUrl":"10.1128/mra.00159-24","url":null,"abstract":"<p><p>We report the draft genome sequence of <i>Raoultella terrigena</i> strain Ech2A causing soft rot on pepper. To verify pathogenicity, Koch's postulates were performed on sweet pepper. Genes encoding pectinolytic enzymes were found in the genome.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":null,"pages":null},"PeriodicalIF":0.7,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}