Dale Liebenberg, Nday L Sungu, Edith E Machowski, Christopher S Ealand, Bavesh D Kana
The complete genome sequences were determined for two mycobacteriophages isolated from Mycobacterium smegmatis mc2155. JayJay, a myoviral bacteriophage from cluster C1, encodes 234 putative genes, 32 tRNAs, and 1 tmRNA. Rinkes, a siphoviral bacteriophage from cluster B9, harbors a smaller genome encoding 93 putative genes.
{"title":"Complete genome sequences of mycobacteriophages JayJay and Rinkes.","authors":"Dale Liebenberg, Nday L Sungu, Edith E Machowski, Christopher S Ealand, Bavesh D Kana","doi":"10.1128/mra.01199-24","DOIUrl":"https://doi.org/10.1128/mra.01199-24","url":null,"abstract":"<p><p>The complete genome sequences were determined for two mycobacteriophages isolated from <i>Mycobacterium smegmatis</i> mc<sup>2</sup>155. JayJay, a <i>myoviral</i> bacteriophage from cluster C1, encodes 234 putative genes, 32 tRNAs, and 1 tmRNA. Rinkes, a <i>siphoviral</i> bacteriophage from cluster B9, harbors a smaller genome encoding 93 putative genes.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0119924"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Algoriphagus is a heterotrophic bacterium commonly found in diverse marine environments. Here, we report the complete genome sequence of Algoriphagus halophilus strain SOCE 003, which is 5,154,101 bp long, encoding 5,524 annotated protein-coding genes, 39 tRNAs, and 8 rRNAs. This genome information will help us understand the ecology of Algoriphagus.
{"title":"Complete genome sequence of <i>Algoriphagus halophilus</i> strain SOCE 003, a marine bacterium isolated from the surface seawater of Dapeng Bay.","authors":"Jiayi Yang, Tian Xia, Xunying Zhou, Shuaishuai Xu, Kangli Guo, Qianqing Zhang, Jing Guo, Shengwei Hou","doi":"10.1128/mra.01306-24","DOIUrl":"https://doi.org/10.1128/mra.01306-24","url":null,"abstract":"<p><p><i>Algoriphagus</i> is a heterotrophic bacterium commonly found in diverse marine environments. Here, we report the complete genome sequence of <i>Algoriphagus halophilus</i> strain SOCE 003, which is 5,154,101 bp long, encoding 5,524 annotated protein-coding genes, 39 tRNAs, and 8 rRNAs. This genome information will help us understand the ecology of <i>Algoriphagus</i>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0130624"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mohammed A Samad, Anowar Hossen, Md Rezaul Karim, Asm Ashab Uddin, Dipu Roy, Khairun Nahar Shithi, Mst Nazia Akter, Taposh Kumar Das, Paul Selleck, Dieter M Bulach, Timothy R Bowden
Lumpy skin disease (LSD) in cattle is managed through live-attenuated vaccines. Bangladesh LSD vaccine was developed from LSD virus isolate Bangladesh LSD-29 by passaging 60 times in cell culture. Here, we report the complete genome sequence of Bangladesh LSD vaccine strain.
{"title":"Complete genome sequence of a Bangladesh-developed live-attenuated lumpy skin disease (LSD) vaccine strain.","authors":"Mohammed A Samad, Anowar Hossen, Md Rezaul Karim, Asm Ashab Uddin, Dipu Roy, Khairun Nahar Shithi, Mst Nazia Akter, Taposh Kumar Das, Paul Selleck, Dieter M Bulach, Timothy R Bowden","doi":"10.1128/mra.01022-24","DOIUrl":"https://doi.org/10.1128/mra.01022-24","url":null,"abstract":"<p><p>Lumpy skin disease (LSD) in cattle is managed through live-attenuated vaccines. Bangladesh LSD vaccine was developed from LSD virus isolate Bangladesh LSD-29 by passaging 60 times in cell culture. Here, we report the complete genome sequence of Bangladesh LSD vaccine strain.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0102224"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The draft genome sequence of Acetobacter persici DS1 was isolated for high-acidity vinegar fermentation. The A. persici DS1 draft genome has a length of 8,793,442 bp, with 44.27% GC content, 3,053 proteins, 3,169 genes, and 15 genes that play an important role in acetic acid production.
{"title":"Draft genome sequence of <i>Acetobacter persici</i> DS1, a strain for high-acidity vinegar fermentation.","authors":"Neha Mani Tripathi, Puneet Kumar Singh, Asha Yadav, Krishna Kant Sharma, Amit Kumar Jain, Gajender Kumar Aseri, Deepansh Sharma, Deepti Singh","doi":"10.1128/mra.01119-24","DOIUrl":"https://doi.org/10.1128/mra.01119-24","url":null,"abstract":"<p><p>The draft genome sequence of <i>Acetobacter persici</i> DS1 was isolated for high-acidity vinegar fermentation. The <i>A. persici</i> DS1 draft genome has a length of 8,793,442 bp, with 44.27% GC content, 3,053 proteins, 3,169 genes, and 15 genes that play an important role in acetic acid production.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0111924"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142983748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sosan Abdulrahman, Adilene Aguirre, Eliana Arriaga, Ashley C Avina, Angeles Badajos, Yureni A Badillo, Alexis M Bañuelos, Javier Pulido, Bet-Sua Bucio Valdovinos, Taliyah Champaco, Rodrigo Chavez, Gregorio Chavez-Felix, Melaina Cruz, Melissa Distancia, Kingsley Dzubay, Andres Espinoza, Julie Estrada, Danneli Fernandez, Alejandra Gutierrez-Villanueva, Marc Guzman, Jimena Hernandez-Tejeda, Victor Hernandez, Jeffery R Hughey, Sebastian Jalomo, Hanna Khanaka, Juliah Kuepfer, Alyssa M Laurel, Julia Lewis, Hanah E Lopez, Ana Martinez, Michell J Martinez, Jorge A Medina Ramirez, Cesar M Ramirez, Fatima Mendez, Ashley Mendoza-Torralba, Kajal Naidu, Abraham Nolasco, Lupita Nuñez, Vivian Paredes, Jesse P Anaya, Sreenivas Rajesh, Kevin Ramirez, Andrea Salazar, Jeriel S Sevilla, Jennifer G Tijero, Aaron Tinoco Viorato, Heaven Valdez
We present the complete chloroplast genome of the eelgrass Zostera pacifica from Monterey, California. The genome is circular and 144,675 bp in length. It consists of 82 protein-coding, 31 transfer RNA, and 8 ribosomal RNA genes and is 99.44%-99.42% similar in nucleotide pairwise identity to the closely related species Zostera marina.
{"title":"Complete chloroplast genome of the marine eelgrass <i>Zostera pacifica</i> (Zosteraceae, Plantae) from Monterey, California.","authors":"Sosan Abdulrahman, Adilene Aguirre, Eliana Arriaga, Ashley C Avina, Angeles Badajos, Yureni A Badillo, Alexis M Bañuelos, Javier Pulido, Bet-Sua Bucio Valdovinos, Taliyah Champaco, Rodrigo Chavez, Gregorio Chavez-Felix, Melaina Cruz, Melissa Distancia, Kingsley Dzubay, Andres Espinoza, Julie Estrada, Danneli Fernandez, Alejandra Gutierrez-Villanueva, Marc Guzman, Jimena Hernandez-Tejeda, Victor Hernandez, Jeffery R Hughey, Sebastian Jalomo, Hanna Khanaka, Juliah Kuepfer, Alyssa M Laurel, Julia Lewis, Hanah E Lopez, Ana Martinez, Michell J Martinez, Jorge A Medina Ramirez, Cesar M Ramirez, Fatima Mendez, Ashley Mendoza-Torralba, Kajal Naidu, Abraham Nolasco, Lupita Nuñez, Vivian Paredes, Jesse P Anaya, Sreenivas Rajesh, Kevin Ramirez, Andrea Salazar, Jeriel S Sevilla, Jennifer G Tijero, Aaron Tinoco Viorato, Heaven Valdez","doi":"10.1128/mra.01189-24","DOIUrl":"https://doi.org/10.1128/mra.01189-24","url":null,"abstract":"<p><p>We present the complete chloroplast genome of the eelgrass <i>Zostera pacifica</i> from Monterey, California. The genome is circular and 144,675 bp in length. It consists of 82 protein-coding, 31 transfer RNA, and 8 ribosomal RNA genes and is 99.44%-99.42% similar in nucleotide pairwise identity to the closely related species <i>Zostera marina</i>.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0118924"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984286","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Allison R Mason, Gregory Johnson, Joseph Krampen, Jennifer N T Nguyen, Marcy J Balunas, Patrick D Schloss
mpactR automates pre-processing of liquid chromatography-tandem mass spectrometry (LC-MS/MS) data from microbiological samples to correct mispicked peaks, resolve inter-sample variation in abundance across technical replicates, account for in-source ion fragmentation, and remove background noise to yield high-quality mass spectrometry features. The package is available through CRAN and GitHub.
{"title":"mpactR: an R adaptation of the metabolomics peak analysis computational tool (MPACT) for use in reproducible data analysis pipelines.","authors":"Allison R Mason, Gregory Johnson, Joseph Krampen, Jennifer N T Nguyen, Marcy J Balunas, Patrick D Schloss","doi":"10.1128/mra.00997-24","DOIUrl":"https://doi.org/10.1128/mra.00997-24","url":null,"abstract":"<p><p>mpactR automates pre-processing of liquid chromatography-tandem mass spectrometry (LC-MS/MS) data from microbiological samples to correct mispicked peaks, resolve inter-sample variation in abundance across technical replicates, account for in-source ion fragmentation, and remove background noise to yield high-quality mass spectrometry features. The package is available through CRAN and GitHub.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0099724"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alexey V Sviridov, Sergey V Tarlachkov, Dmitry O Epiktetov, Tatyana V Shushkova, Marina P Petrakova, Alexey A Leontievsky
The genome of Ochrobactrum sp. isolated from agricultural soil polluted with the herbicide glyphosate is reported. The genome size is 5.48 Mb with an average G + C content of 56.3%. This genomic data could contribute to a better understanding of biochemistry and regulatory mechanisms of microbial degradation of glyphosate and 2-aminoethylphosphonic acid.
报道了从草甘膦污染的农业土壤中分离到的Ochrobactrum sp.的基因组。基因组大小为5.48 Mb， G + C平均含量为56.3%。这些基因组数据有助于更好地理解微生物降解草甘膦和2-氨基乙基膦酸的生物化学和调控机制。
{"title":"Draft genome sequence of glyphosate-degrading <i>Ochrobactrum</i> sp. strain GPK 3 (VKM B-2554D) isolated from agricultural soil.","authors":"Alexey V Sviridov, Sergey V Tarlachkov, Dmitry O Epiktetov, Tatyana V Shushkova, Marina P Petrakova, Alexey A Leontievsky","doi":"10.1128/mra.01186-24","DOIUrl":"https://doi.org/10.1128/mra.01186-24","url":null,"abstract":"<p><p>The genome of <i>Ochrobactrum</i> sp. isolated from agricultural soil polluted with the herbicide glyphosate is reported. The genome size is 5.48 Mb with an average G + C content of 56.3%. This genomic data could contribute to a better understanding of biochemistry and regulatory mechanisms of microbial degradation of glyphosate and 2-aminoethylphosphonic acid.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0118624"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sam E Williams, David Faurdal, Tue S Jørgensen, Catherine R Back, Lynden D Rooms, Martin A Hayes, Christine L Willis, James E M Stach, Paul Curnow, Paul R Race
Here, we report the resequencing, assembly, and annotation of two actinomycete genomes containing abyssomicin gene clusters. Kutzneria buriramensis DSM 45791 with a circular chromosome of 11,681,598 bp and 4 circular plasmids (14,175-207,548 bp) and Streptomyces sp. NL15-2K with a 12,368,159 bp linear genome and circular plasmid (11,584 bp).
{"title":"Complete genome sequences of two actinomycetes containing abyssomicin-like gene clusters: <i>Kutzneria buriramensis</i> DSM 45791 and <i>Streptomyces</i> sp. NL15-2K.","authors":"Sam E Williams, David Faurdal, Tue S Jørgensen, Catherine R Back, Lynden D Rooms, Martin A Hayes, Christine L Willis, James E M Stach, Paul Curnow, Paul R Race","doi":"10.1128/mra.01158-24","DOIUrl":"https://doi.org/10.1128/mra.01158-24","url":null,"abstract":"<p><p>Here, we report the resequencing, assembly, and annotation of two actinomycete genomes containing abyssomicin gene clusters. <i>Kutzneria buriramensis</i> DSM 45791 with a circular chromosome of 11,681,598 bp and 4 circular plasmids (14,175-207,548 bp) and <i>Streptomyces</i> sp. NL15-2K with a 12,368,159 bp linear genome and circular plasmid (11,584 bp).</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0115824"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142983133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shaomin Qin, Wenting Zeng, Jue Wei, Fenglian Chen, Ling Ma, Shuying Qin, Jun Lin, Lishi Xu, Peng Zhu, Jinfeng Liu
A cellulase-producing Bacillus was previously isolated from the intestinal tract of domestic bamboo rat and identified as Bacillus subtilis GL-4. In this study, we present the complete genome sequence of B. subtilis GL-4. The genome is 4,271,214 bp long, with a guanine-cytosine content of 43.45%.
{"title":"Complete genome sequence of <i>Bacillus subtilis</i> GL-4.","authors":"Shaomin Qin, Wenting Zeng, Jue Wei, Fenglian Chen, Ling Ma, Shuying Qin, Jun Lin, Lishi Xu, Peng Zhu, Jinfeng Liu","doi":"10.1128/mra.00550-24","DOIUrl":"https://doi.org/10.1128/mra.00550-24","url":null,"abstract":"<p><p>A cellulase-producing <i>Bacillus</i> was previously isolated from the intestinal tract of domestic bamboo rat and identified as <i>Bacillus subtilis</i> GL-4. In this study, we present the complete genome sequence of <i>B. subtilis</i> GL-4. The genome is 4,271,214 bp long, with a guanine-cytosine content of 43.45%.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0055024"},"PeriodicalIF":0.7,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xiaofen Liu, Godfrey Miles, Yu-Cheng Zhu, Michael Grodowitz, Esmaeil Amiri, Brian Scheffler, Jian Chen
Deformed wing virus (DWV) can cause a major disease in honeybees worldwide and has been detected in many other arthropods (S. J. Martin and L. E. Brettell, Annu Rev Virol 6:49-69, 2019, https://www.annualreviews.org/content/journals/10.1146/annurev-virology-092818-015700). The presence and replication of DWV in Solenopsis invicta (red fire ant) were confirmed (G. P. Miles, X. F. Liu, E. Amiri, M. J. Grodowitz, et al., Insects 14:788, 2023, https://www.mdpi.com/2075-4450/14/10/788). Here, we document the DWV-A near-complete genome sequence from S. invicta in Mississippi, USA.
变形翼病毒（DWV）可引起全球蜜蜂的主要疾病，并已在许多其他节肢动物中发现（S. J. Martin和L. E. Brettell, Annu Rev Virol 6:49-69, 2019, https://www.annualreviews.org/content/journals/10.1146/annurev-virology-092818-015700）。证实了DWV在红火蚁（Solenopsis invicta）中的存在和复制（G. P. Miles， X. F. Liu， E. Amiri， M. J. Grodowitz, et .，《昆虫》14:7 88,2023,https://www.mdpi.com/2075-4450/14/10/788）。在这里，我们记录了来自美国密西西比州的S. invicta的DWV-A近乎完整的基因组序列。
{"title":"Near-complete genome sequence of a type-A deformed wing virus discovered from <i>Solenopsis invicta</i> in Mississippi, USA.","authors":"Xiaofen Liu, Godfrey Miles, Yu-Cheng Zhu, Michael Grodowitz, Esmaeil Amiri, Brian Scheffler, Jian Chen","doi":"10.1128/mra.00921-24","DOIUrl":"https://doi.org/10.1128/mra.00921-24","url":null,"abstract":"<p><p>Deformed wing virus (DWV) can cause a major disease in honeybees worldwide and has been detected in many other arthropods (S. J. Martin and L. E. Brettell, Annu Rev Virol 6:49-69, 2019, https://www.annualreviews.org/content/journals/10.1146/annurev-virology-092818-015700). The presence and replication of DWV in <i>Solenopsis invicta</i> (red fire ant) were confirmed (G. P. Miles, X. F. Liu, E. Amiri, M. J. Grodowitz, et al., Insects 14:788, 2023, https://www.mdpi.com/2075-4450/14/10/788). Here, we document the DWV-A near-complete genome sequence from <i>S. invicta</i> in Mississippi, USA.</p>","PeriodicalId":18654,"journal":{"name":"Microbiology Resource Announcements","volume":" ","pages":"e0092124"},"PeriodicalIF":0.7,"publicationDate":"2025-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142979183","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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