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Targeting the HIV-1 Env fusion protein 瞄准 HIV-1 Env 融合蛋白。
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2024-01-23 DOI: 10.1038/s41579-024-01013-5
Andrea Du Toit
This study reports that antibodies that target the fusion peptide on the HIV envelope provide protection to rhesus macaques against mucosal simian-HIV challenge.
这项研究报告称,针对艾滋病病毒包膜上的融合肽的抗体可保护猕猴免受粘膜猿类艾滋病病毒的挑战。
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引用次数: 0
Synthetic microbiology in sustainability applications 可持续性应用中的合成微生物学。
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2024-01-22 DOI: 10.1038/s41579-023-01007-9
Ethan M. Jones, John P. Marken, Pamela A. Silver
Microorganisms are a promising means to address many societal sustainability challenges owing to their ability to thrive in diverse environments and interface with the microscale chemical world via diverse metabolic capacities. Synthetic biology can engineer microorganisms by rewiring their regulatory networks or introducing new functionalities, enhancing their utility for target applications. In this Review, we provide a broad, high-level overview of various research efforts addressing sustainability challenges through synthetic biology, emphasizing foundational microbiological research questions that can accelerate the development of these efforts. We introduce an organizational framework that categorizes these efforts along three domains — factory, farm and field — that are defined by the extent to which the engineered microorganisms interface with the natural external environment. Different application areas within the same domain share many fundamental challenges, highlighting productive opportunities for cross-disciplinary collaborations between researchers working in historically disparate fields. In this Review, Jones, Marken and Silver develop a conceptual framework for synthetic microbiology organized into three domains — factory, farm and field — to explore the utility of synthetic microbiology in addressing sustainability challenges, and examine several examples of microbial engineering applications relevant to each domain.
微生物能够在各种环境中茁壮成长,并通过不同的新陈代谢能力与微观化学世界相连接,因此是应对许多社会可持续性挑战的一种有前途的手段。合成生物学可以通过重新连接微生物的调控网络或引入新的功能来改造微生物,从而提高它们在目标应用中的效用。在本《综述》中,我们对通过合成生物学应对可持续性挑战的各种研究工作进行了广泛、高层次的概述,强调了可加速这些工作发展的基础微生物学研究问题。我们引入了一个组织框架,按照工厂、农场和田间三个领域对这些研究工作进行分类,这三个领域是根据工程微生物与外部自然环境的交互程度来定义的。同一领域内的不同应用领域面临着许多共同的基本挑战,这为在历来不同领域工作的研究人员之间开展跨学科合作提供了良机。
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引用次数: 0
Genus-wide research provides insights into pathogen evolution 全基因组的研究为病原体的进化提供了洞察力。
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2024-01-22 DOI: 10.1038/s41579-024-01009-1
Stephanie McGimpsey, Mathew A. Beale
This Genome Watch article highlights how studying pathogens in the context of their phylogenetic neighbours can provide insights into their evolution.
这篇 "基因组观察 "文章重点介绍了在系统发育相邻关系的背景下研究病原体如何有助于深入了解病原体的进化。
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引用次数: 0
Bdellovibrio bacteriovorus finds its prey 细菌噬菌体发现猎物
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2024-01-19 DOI: 10.1038/s41579-024-01012-6
Andrea Du Toit
This study describes Bdellovibrio bacteriovorus trimeric fibre proteins with diverse adhesive tips that enable the identification of a broad range of prey.
本研究描述了具有多种粘附尖端的 Bdellovibrio bacteriovorus 三聚体纤维蛋白,它们能够识别多种猎物。
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引用次数: 0
Cutibacterium improves skin condition Cutibacterium 可改善皮肤状况
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2024-01-18 DOI: 10.1038/s41579-024-01011-7
Agustina Taglialegna
In this study, Knödlseder et al. explore the potential of an engineered Cutibacterium acnes strain as a microbiome-based therapy for skin conditions.
在这项研究中,Knödlseder 等人探索了痤疮杆菌工程菌株作为基于微生物的皮肤病疗法的潜力。
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引用次数: 0
SARS-CoV-2 biology and host interactions SARS-CoV-2 生物学和宿主相互作用
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2024-01-15 DOI: 10.1038/s41579-023-01003-z
Silvio Steiner, Annika Kratzel, G. Tuba Barut, Reto M. Lang, Etori Aguiar Moreira, Lisa Thomann, Jenna N. Kelly, Volker Thiel
The zoonotic emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the ensuing coronavirus disease 2019 (COVID-19) pandemic have profoundly affected our society. The rapid spread and continuous evolution of new SARS-CoV-2 variants continue to threaten global public health. Recent scientific advances have dissected many of the molecular and cellular mechanisms involved in coronavirus infections, and large-scale screens have uncovered novel host-cell factors that are vitally important for the virus life cycle. In this Review, we provide an updated summary of the SARS-CoV-2 life cycle, gene function and virus–host interactions, including recent landmark findings on general aspects of coronavirus biology and newly discovered host factors necessary for virus replication. In this Review, Thiel and colleagues summarize our emerging knowledge of the SARS-CoV-2 intracellular life cycle and the molecular functions of the viral proteins, as well as their interaction with the host cell.
严重急性呼吸系统综合征冠状病毒 2(SARS-CoV-2)的人畜共患以及随之而来的 2019 年冠状病毒病(COVID-19)大流行对我们的社会产生了深远的影响。SARS-CoV-2 新变种的快速传播和不断演变继续威胁着全球公共卫生。最近的科学进步剖析了冠状病毒感染所涉及的许多分子和细胞机制,大规模筛选发现了对病毒生命周期至关重要的新型宿主细胞因子。在这篇综述中,我们对 SARS-CoV-2 的生命周期、基因功能和病毒与宿主的相互作用进行了最新总结,包括冠状病毒生物学一般方面的最新标志性发现和新发现的病毒复制所必需的宿主因子。
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引用次数: 0
Extracellular niche establishment by plant pathogens 植物病原体建立细胞外生态位
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2024-01-08 DOI: 10.1038/s41579-023-00999-8
Charles Roussin-Léveillée, David Mackey, Gayani Ekanayake, Reid Gohmann, Peter Moffett
The plant extracellular space, referred to as the apoplast, is inhabited by a variety of microorganisms. Reflecting the crucial nature of this compartment, both plants and microorganisms seek to control, exploit and respond to its composition. Upon sensing the apoplastic environment, pathogens activate virulence programmes, including the delivery of effectors with well-established roles in suppressing plant immunity. We posit that another key and foundational role of effectors is niche establishment — specifically, the manipulation of plant physiological processes to enrich the apoplast in water and nutritive metabolites. Facets of plant immunity counteract niche establishment by restricting water, nutrients and signals for virulence activation. The complex competition to control and, in the case of pathogens, exploit the apoplast provides remarkable insights into the nature of virulence, host susceptibility, host defence and, ultimately, the origin of phytopathogenesis. This novel framework focuses on the ecology of a microbial niche and highlights areas of future research on plant–microorganism interactions. In this Review, Roussin-Léveillée, Mackey and colleagues examine microorganism interaction with and manipulation of the plant apoplast. Effector-driven extracellular niche establishment is conceptualized as foundational to plant pathogenesis and frames the discussion of the complex interplay between pathogen virulence, host immunity and the physiological dynamics shaping plant–microorganism interactions.
植物的细胞外空间被称为细胞质,其中居住着各种微生物。植物和微生物都试图控制、利用细胞外空间并对其成分做出反应,这反映了细胞外空间的重要性。在感知凋亡体环境后,病原体会启动毒力程序,包括传递在抑制植物免疫方面具有公认作用的效应物。我们认为,效应物的另一个关键和基础作用是建立生态位--具体来说,就是操纵植物生理过程,使凋亡体富含水分和营养代谢物。植物免疫通过限制水分、养分和毒力激活信号来抵消生态位的建立。控制凋落物的复杂竞争,以及病原体对凋落物的利用,为人们深入了解毒力、宿主易感性、宿主防御的本质,以及最终植物致病机理的起源提供了重要线索。这个新颖的框架侧重于微生物生态位的生态学,并强调了植物与微生物相互作用的未来研究领域。
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引用次数: 0
Clinical course and management of COVID-19 in the era of widespread population immunity 广泛人群免疫时代 COVID-19 的临床过程和管理
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2023-12-19 DOI: 10.1038/s41579-023-01001-1
Eric A. Meyerowitz, Jake Scott, Aaron Richterman, Victoria Male, Muge Cevik
The clinical implications of COVID-19 have changed since SARS-CoV-2 first emerged in humans. The current high levels of population immunity, due to prior infection and/or vaccination, have been associated with a vastly decreased overall risk of severe disease. Some people, particularly those with immunocompromising conditions, remain at risk for severe outcomes. Through the course of the pandemic, variants with somewhat different symptom profiles from the original SARS-CoV-2 virus have emerged. The management of COVID-19 has also changed since 2020, with the increasing availability of evidence-based treatments in two main classes: antivirals and immunomodulators. Selecting the appropriate treatment(s) for patients with COVID-19 requires a deep understanding of the evidence and an awareness of the limitations of applying data that have been largely based on immune-naive populations to patients today who most likely have vaccine-derived and/or infection-derived immunity. In this Review, we provide a summary of the clinical manifestations and approaches to caring for adult patients with COVID-19 in the era of vaccine availability and the dominance of the Omicron subvariants, with a focus on the management of COVID-19 in different patient groups, including immunocompromised, pregnant, vaccinated and unvaccinated patients. In this Review, Meyerowitz et al. examine the clinical presentations of COVID-19 in the era of widespread population immunity and explore current approaches to managing COVID-19 across different patient groups.
自 SARS-CoV-2 首次在人类中出现以来,COVID-19 的临床影响已经发生了变化。由于先前的感染和/或疫苗接种,目前人群的免疫水平很高,这与严重疾病的总体风险大大降低有关。但有些人,特别是免疫力低下的人,仍有可能出现严重后果。在这次大流行过程中,出现了一些症状特征与原始 SARS-CoV-2 病毒略有不同的变种。自 2020 年以来,COVID-19 的治疗方法也发生了变化,主要有两大类循证治疗方法:抗病毒药物和免疫调节剂。要为 COVID-19 患者选择合适的治疗方法,需要深入了解相关证据,并认识到将主要基于免疫缺陷人群的数据应用于当今患者的局限性,因为这些患者很可能具有疫苗衍生和/或感染衍生的免疫力。在本综述中,我们总结了在疫苗可用和奥米克龙亚变种占主导地位的时代,COVID-19 成年患者的临床表现和护理方法,重点关注不同患者群体(包括免疫力低下、妊娠、接种疫苗和未接种疫苗的患者)的 COVID-19 管理。
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引用次数: 0
Utilization of the microbiome in personalized medicine 在个性化医疗中利用微生物组
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2023-12-18 DOI: 10.1038/s41579-023-00998-9
Karina Ratiner, Dragos Ciocan, Suhaib K. Abdeen, Eran Elinav
Inter-individual human variability, driven by various genetic and environmental factors, complicates the ability to develop effective population-based early disease detection, treatment and prognostic assessment. The microbiome, consisting of diverse microorganism communities including viruses, bacteria, fungi and eukaryotes colonizing human body surfaces, has recently been identified as a contributor to inter-individual variation, through its person-specific signatures. As such, the microbiome may modulate disease manifestations, even among individuals with similar genetic disease susceptibility risks. Information stored within microbiomes may therefore enable early detection and prognostic assessment of disease in at-risk populations, whereas microbiome modulation may constitute an effective and safe treatment tailored to the individual. In this Review, we explore recent advances in the application of microbiome data in precision medicine across a growing number of human diseases. We also discuss the challenges, limitations and prospects of analysing microbiome data for personalized patient care. In this study, Ratiner et al. examine the advantages, challenges and future perspectives of utilizing microbiome data in personalized medicine for optimal patient care.
受各种遗传和环境因素的影响,人类个体间的差异使得开发基于人群的有效早期疾病检测、治疗和预后评估的能力变得更加复杂。微生物组由定植于人体表面的各种微生物群落组成,包括病毒、细菌、真菌和真核生物。因此,微生物组可能会调节疾病的表现,即使在具有类似遗传疾病易感性风险的个体中也是如此。因此,储存在微生物组中的信息可帮助对高危人群的疾病进行早期检测和预后评估,而微生物组调控则可为个体提供有效、安全的治疗。在本综述中,我们将探讨在越来越多的人类疾病中应用微生物组数据进行精准医疗的最新进展。我们还讨论了分析微生物组数据用于个性化患者护理所面临的挑战、局限性和前景。
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引用次数: 0
Viruses and autophagy: bend, but don’t break 病毒与自噬:弯曲,但不折断
IF 88.1 1区 生物学 Q1 Medicine Pub Date : 2023-12-15 DOI: 10.1038/s41579-023-00995-y
Alagie Jassey, William T. Jackson
Autophagy is a constitutive cellular process of degradation required to maintain homeostasis and turn over spent organelles and aggregated proteins. For some viruses, the process can be antiviral, degrading viral proteins or virions themselves. For many other viruses, the induction of the autophagic process provides a benefit and promotes viral replication. In this Review, we survey the roles that the autophagic pathway plays in the replication of viruses. Most viruses that benefit from autophagic induction block autophagic degradation, which is a ‘bend, but don’t break’ strategy initiating but limiting a potentially antiviral response. In almost all cases, it is other effects of the redirected autophagic machinery that benefit these viruses. This rapid mechanism to generate small double-membraned vesicles can be usurped to shape membranes for viral genome replication and virion maturation. However, data suggest that autophagic maintenance of cellular homeostasis is crucial for the initiation of infection, as viruses have evolved to replicate in normal, healthy cells. Inhibition of autophagic degradation is important once infection has initiated. Although true degradative autophagy is probably a negative for most viruses, initiating nondegradative autophagic membranes benefits a wide variety of viruses. In this Review, Jassey and Jackson explore the intricate relationship between viruses and the autophagic pathway, highlighting how viruses either exploit or manipulate the autophagy pathway to influence their replication and survival within host cells.
自噬是维持体内平衡和翻转废细胞器和聚集蛋白所需的基本细胞降解过程。对于一些病毒,这个过程可以是抗病毒的,降解病毒蛋白或病毒粒子本身。对于许多其他病毒,自噬过程的诱导提供了一个好处,并促进病毒复制。本文综述了自噬途径在病毒复制中的作用。大多数受益于自噬诱导的病毒会阻断自噬降解,这是一种“弯曲但不折断”的策略,可启动但限制潜在的抗病毒反应。在几乎所有情况下,对这些病毒有利的是重定向自噬机制的其他作用。这种快速生成小双膜囊泡的机制可以被篡夺来形成病毒基因组复制和病毒粒子成熟的膜。然而,数据表明,自噬维持细胞稳态对感染的开始至关重要,因为病毒已经进化到在正常健康细胞中复制。一旦感染开始,抑制自噬降解是重要的。虽然真正的降解性自噬对大多数病毒来说可能是负面的,但启动非降解性自噬膜对多种病毒有益。
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引用次数: 0
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Nature Reviews Microbiology
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