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A TIM-barrel metalloenzyme with sugar-cleavage activity 具有糖裂解活性的tim桶型金属酶
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-24 DOI: 10.1038/s41929-025-01413-7
A TIM-barrel metalloenzyme — Art22 — involved in the sugar-moiety modification of the antibiotic aurantinin B (ART B) has been discovered. This enzyme activates 4-keto ART B to ART B through rapid isomerization. Additionally, Art22 slowly converts ART B into inactive products through oxidative cleavage of the 3-keto hexopyranose.
TIM-barrel金属酶Art22参与了抗生素金菌素B (ART B)的糖基修饰。该酶通过快速异构化激活4-酮ART B到ART B。此外,Art22通过氧化裂解3-酮己糖,缓慢地将ART B转化为无活性产物。
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引用次数: 0
Quantum computing for faster enzyme discovery and engineering 量子计算用于更快的酶发现和工程
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-24 DOI: 10.1038/s41929-025-01410-w
Jiri Damborsky, Petr Kouba, Josef Sivic, Michal Vasina, David Bednar, Stanislav Mazurenko
Quantum computing, by leveraging the unique principles of quantum mechanics, offers transformative potential for biocatalysis and related disciplines. Compared to classical algorithms, quantum algorithms deliver immense acceleration to quantum computers, making them suited for tackling computationally challenging problems such as simulating many-body biomolecular systems or enzyme-catalysed chemical reactions. However, current quantum hardware is constrained by noise, limited qubit coherence and high error rates, restricting its capacity to model complex biochemical phenomena. Here we explore the rapidly advancing landscape of quantum computing and its future applications in the discovery and rational engineering of biocatalysts. We identify key areas where quantum algorithms could surpass classical limitations, including the quantum chemistry-based design of biocatalysts with enhanced catalytic activity or selectivity, parallelized mining of novel enzymes, accurate ancestral sequence reconstruction, and combinatorial in silico protein evolution. Overcoming current hardware limitations could unlock transformative advances in both fundamental enzymology and industrial bioprocessing. Quantum computing is a promising technology to solve complex challenges that would take classical computers an impractical amount of time. This Perspective discusses the current state of quantum computing and possible applications in enzyme engineering and biocatalysis.
量子计算利用量子力学的独特原理,为生物催化和相关学科提供了变革的潜力。与经典算法相比,量子算法为量子计算机提供了巨大的加速,使其适合于解决计算上具有挑战性的问题,如模拟多体生物分子系统或酶催化的化学反应。然而,目前的量子硬件受到噪声、有限的量子比特相干性和高错误率的限制,限制了其模拟复杂生化现象的能力。在这里,我们将探讨量子计算的快速发展前景及其在生物催化剂的发现和合理工程中的未来应用。我们确定了量子算法可以超越经典限制的关键领域,包括基于量子化学的生物催化剂设计,具有增强的催化活性或选择性,新型酶的并行挖掘,精确的祖先序列重建以及组合硅蛋白进化。克服目前的硬件限制,可能会在基础酶学和工业生物处理方面带来革命性的进步。量子计算是一项很有前途的技术,可以解决传统计算机需要大量时间才能解决的复杂挑战。本展望讨论了量子计算的现状及其在酶工程和生物催化中的可能应用。
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引用次数: 0
Substrate promiscuity fuels biosynthesis success 底物的混杂促进了生物合成的成功
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-24 DOI: 10.1038/s41929-025-01419-1
Jan-Stefan Völler
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引用次数: 0
General reactive element-based machine learning potentials for heterogeneous catalysis 多相催化中基于一般反应元素的机器学习潜力
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-23 DOI: 10.1038/s41929-025-01398-3
Changxi Yang, Chenyu Wu, Wenbo Xie, Daiqian Xie, P. Hu
Developing truly universal machine learning potentials for heterogeneous catalysis remains challenging. Here we introduce our element-based machine learning potential (EMLP), trained on a unique random exploration via imaginary chemicals optimization (REICO) sampling strategy. REICO samples diverse local atomic environments to build a representative dataset of atomic interactions, making the EMLP inherently general and reactive, capable of accurately predicting elementary reactions without explicit structural or reaction pathway inputs. We demonstrate the generality and reactivity of our approach by building a Ag-Pd-C-H-O EMLP targeting Pd–Ag catalysts interacting with C/H/O-containing species, achieving quantitative agreement with density functional theory even for complex scenarios such as surface reconstruction, coverage effects and solvent environments, cases for which existing foundation models typically fail. Our method paves the way to replace density functional theory calculations for large and intricate systems in heterogeneous catalysis, and offers a general framework that can readily be extended to other catalytic systems, and to broader fields such as materials science. It is challenging to design machine learning potentials for heterogeneous catalysis that are universal, reactive and have high accuracy. Now, an element-based machine learning potential relying on a random exploration via an imaginary chemicals optimization sampling strategy is put forward, and is successfully demonstrated for a range of applications.
开发真正通用的多相催化机器学习潜力仍然具有挑战性。在这里,我们介绍了基于元素的机器学习潜力(EMLP),它通过假想化学品优化(REICO)采样策略进行独特的随机探索。REICO对不同的局部原子环境进行采样,以建立原子相互作用的代表性数据集,使EMLP具有固有的一般性和反应性,能够在没有明确的结构或反应途径输入的情况下准确预测基本反应。我们通过构建针对Pd-Ag催化剂与含C/H/ o物质相互作用的Ag-Pd-C-H-O EMLP,证明了我们方法的通用性和反应性,即使在表面重建、覆盖效应和溶剂环境等复杂情况下,我们也与密度泛函理论达成了定量一致,这些情况下现有的基础模型通常都是失败的。我们的方法为多相催化中大型复杂系统的密度泛函理论计算铺平了道路,并提供了一个通用框架,可以很容易地扩展到其他催化系统,以及更广泛的领域,如材料科学。设计具有普遍性、反应性和高准确性的多相催化机器学习潜力是一项挑战。现在,提出了一种基于元素的机器学习潜力,该潜力依赖于通过假想化学品优化采样策略进行随机探索,并成功地在一系列应用中得到了证明。
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引用次数: 0
Achieving mono-selective palladium(II)-catalysed C–H activation of arenes with protein ligands 实现单选择性钯(II)催化芳烃与蛋白质配体的碳氢活化
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-08 DOI: 10.1038/s41929-025-01407-5
Hua-Jin Xu, Zhoulong Fan, Bin-Bin Nian, Chen-Hao Gu, Shuo-Jie Shen, Wei Zhang, Yi Hu, Jin-Quan Yu
Achieving mono-selectivity in C–H activation reactions is a considerable challenge when multiple identical C–H bonds coexist. Despite recent rapid advances in site-selective and enantioselective C–H activation, a large number of C–H activation reactions still suffer from poor mono-selectivity. Here we report the use of commercial enzymes as ligands for palladium catalysts, enabling enhanced reactivity and exceptionally high mono-selectivity (up to 99%) in both ortho- and meta-C–H activation of arenes, which originally used bifunctional mono-N-protected amino acid ligands but with poor mono-selectivity. Notably, the Pd–enzyme complex was identified as the active catalyst species. Mechanistic investigations and structural analyses of the enzymes suggest that the enzyme primary structure, the sequence length and the percentage of amino acids with hydrophobic side chains are critical for achieving mono-selectivity. By leveraging these findings, we further developed a glycine-containing oligopeptide capable of achieving similarly high mono-selectivity. Molecular organometallic catalysts typically struggle to activate only one of two identical C–H bonds in arenes for mono-selective C–H activation. Now mono-selectivity has been achieved for Pd(II)-catalysed ortho- or meta-C–H activations using commercial proteins or designed peptides as ligands.
当多个相同的碳氢键共存时,在碳氢活化反应中实现单选择性是相当大的挑战。尽管近年来在位点选择性和对映选择性C-H活化方面进展迅速,但大量的C-H活化反应仍然存在较差的单选择性。在这里,我们报告了使用商业酶作为钯催化剂的配体,在芳烃的邻位和间碳氢活化中增强了反应活性和极高的单选择性(高达99%),而芳烃最初使用双功能单n保护氨基酸配体,但单选择性较差。值得注意的是,pd -酶配合物被确定为活性催化剂。酶的机制研究和结构分析表明,酶的一级结构、序列长度和疏水侧链氨基酸的百分比是实现单选择性的关键。利用这些发现,我们进一步开发了一种含有甘氨酸的寡肽,能够实现类似的高单选择性。
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引用次数: 0
Microenvironment effects in electrochemical CO2 reduction from first-principles multiscale modelling 电化学CO2还原中的微环境效应:第一原理多尺度模拟
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-08 DOI: 10.1038/s41929-025-01399-2
Francesca Lorenzutti, Ranga Rohit Seemakurthi, Evan F. Johnson, Santiago Morandi, Pavle Nikačević, Núria López, Sophia Haussener
Electrochemical CO2 reduction is expected to become a key player in net-zero technologies, yet its industrial implementation is currently limited. Improvements based on fine-tuning microenvironments (that is, electrolyte environments around catalytic sites) have been scarce due to the interplay between electrode kinetics and transport. Here we couple atomistic insights with continuum transport via ab initio multiscale modelling, explicitly including electrolyte effects at all scales. The resulting model is validated on silver planar electrodes in several liquid electrolytes, and the current dependence with voltage aligns with experimental observations. We show that a balance between CO2 diffusion and cation accumulation needs to be achieved to obtain optimal rates. In ionomers, this limitation can be overcome since organic cation-based microenvironments are present at a fixed concentration, but water management becomes critical. Our approach paves the way towards rational microenvironment design in electrochemical CO2 conversion. Optimizing devices for electrochemical CO2 reduction requires a comprehensive and quantitative understanding of the microenvironments where the reactions occur. Now, a multiscale modelling approach that explicitly accounts for electrolyte effects at all scales is developed and showcased for the electroreduction of CO2 on silver.
电化学二氧化碳减排有望成为净零排放技术的关键参与者,但其工业实施目前受到限制。由于电极动力学和传输之间的相互作用,基于微调微环境(即催化位点周围的电解质环境)的改进很少。在这里,我们通过从头算多尺度模型将原子的洞察力与连续输运结合起来,明确地包括所有尺度上的电解质效应。该模型在几种液体电解质中的银平面电极上进行了验证,电流与电压的依赖关系与实验观察结果一致。我们表明,需要在CO2扩散和阳离子积累之间取得平衡,以获得最佳速率。在离聚物中,这种限制可以克服,因为有机阳离子微环境以固定浓度存在,但水管理变得至关重要。我们的方法为电化学CO2转化中合理的微环境设计铺平了道路。
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引用次数: 0
Enantioselective radical α-enolation of esters via electrochemical chiral isothiourea catalysis 电化学手性异硫脲催化对映选择性自由基α-烯醇化酯
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-08 DOI: 10.1038/s41929-025-01408-4
Ning Li, Xuzhen Ye, Yong Liu, Jin Song
Carboxylic ester motifs are prevalent in biological, chemical and materials sciences, and the asymmetric α-functionalization of simple esters plays a crucial role in the field of organic synthesis. Here we present a versatile electricity-driven asymmetric Lewis base catalysis strategy for the oxidative radical cross-coupling of simple esters with silyl enol ethers. This approach integrates the electrochemical anodic oxidation process with chiral isothiourea catalysis, enabling a polarity inversion at the nucleophilic carbon of the enolate to trigger the formation of a chiral isothiourea-bound α-carbonyl radical species from a C1-ammonium enolate. The combination of asymmetric Lewis base catalysis and electrochemistry unlocks mild oxidative radical coupling reactions, achieving up to 98% enantiomeric excess and demonstrating broad substrate compatibility. This work underscores the synthetic potential of the approach and provides a platform for advancing asymmetric electrosynthesis. Strategies for asymmetric control in electrosynthesis involving radicals are sought after. Now asymmetric Lewis base catalysis is combined with electrochemistry, enabling the oxidative radical cross-coupling of esters with silyl enol ethers and affording γ-keto esters in high enantiomeric excess.
羧基酯基序在生物、化学和材料科学中普遍存在,简单酯的不对称α-功能化在有机合成领域起着至关重要的作用。在这里,我们提出了一种通用的电驱动的不对称路易斯碱催化策略,用于简单酯与硅烯醇醚的氧化自由基交叉偶联。该方法将电化学阳极氧化过程与手性异硫脲催化相结合,使烯酸酯的亲核碳极性倒置,从而触发c1 -铵烯酸酯形成手性异硫脲结合的α-羰基自由基。不对称路易斯碱催化和电化学的结合开启了温和的氧化自由基偶联反应,实现了高达98%的对映体过剩,并展示了广泛的底物兼容性。这项工作强调了该方法的合成潜力,并为推进不对称电合成提供了一个平台。
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引用次数: 0
A modular synthesis of azetidines from reactive triplet imine intermediates using an intermolecular aza Paternò–Büchi reaction 用分子间aza Paternò-Büchi反应从反应性三态亚胺中间体合成氮杂啶的模块化方法
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-09-05 DOI: 10.1038/s41929-025-01405-7
Benedict A. Williams, Michael J. Tilby, Nicholas A. Parker, Mycah R. Uehling, J. Caleb Hethcox, Dipannita Kalyani, Michael C. Willis
Azetidines are four-membered saturated N-heterocycles that are of interest in discovery chemistry. However, the implementation of these structures is limited by their synthetic intractability, resulting from their inherent ring strain. An approach that circumvents this is the intermolecular [2 + 2] photocycloaddition between imines and alkenes. However, this is unworkable with simple acyclic imines and non-activated alkenes, due to the inability to generate suitably reactive imine-derived triplet intermediates. Here we show that simple acyclic imines bearing N-sulfamoyl fluoride substituents generate reactive triplet imines that react with a broad range of alkenes to produce azetidine products in high yields. Mechanistic and computational studies confirm the key role of the sulfamoyl fluoride unit in dictating the [2 + 2] pathway. In addition, the sulfamoyl fluoride substituents offer a convenient reaction site for product functionalization or for traceless removal. The advent of synthetically useful imine-derived triplets should initiate further research and applications of these elusive reactive intermediates. Azetidines are four-membered saturated N-heterocycles that are of interest in drug discovery and medicinal chemistry. Here the authors report how sulfamoyl fluoride substituents tune the reactivity of acyclic imine-derived triplet intermediates for the synthesis of azetidines via a [2 + 2] photocycloaddition reaction with alkenes.
氮杂环是一种四元饱和n杂环,在发现化学中具有重要意义。然而,由于其固有的环应变,这些结构的实现受到其合成复杂性的限制。规避这一问题的一种方法是亚胺和烯烃之间的分子间[2 + 2]光环加成反应。然而,这对于简单的无环亚胺和非活化烯烃是不可行的,因为无法生成适当的反应性亚胺衍生的三重中间体。本研究表明,含n -磺酰氟取代基的简单无环亚胺可生成反应性三亚胺,与多种烯烃反应,以高收率生产氮杂啶产品。机制和计算研究证实了磺酰氟单元在决定[2 + 2]途径中的关键作用。此外,磺酰氟取代基为产物功能化或无痕迹去除提供了方便的反应位点。合成上有用的亚胺衍生三联体的出现,应该会开启这些难以捉摸的反应中间体的进一步研究和应用。
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引用次数: 0
Site-selective Ru-catalysed saturation of unactivated arenes via directed 6π activation 通过定向6π活化,钌催化非活化芳烃的选择性饱和
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-08-28 DOI: 10.1038/s41929-025-01404-8
Congjun Yu, Linda Yiu, Zining Zhang, Guangbin Dong
Directing group-based strategies have proven highly effective for site-selective functionalization of π bonds in alkenes and carbonyls, as well as C–H and C–C bonds, but have yet to be demonstrated for unactivated aromatic π-systems. Meanwhile, catalytic hydrogenation of arenes to their corresponding saturated carbo- or heterocycles offers a straightforward approach to increase molecular three-dimensionality and sp3 carbon content in pharmaceutical compounds; however, it remains challenging to achieve site-selective dearomatization among electronically and sterically unbiased arenes. Here we report a Ru-catalysed directed arene saturation, which selectively reduces the aryl group adjacent to the directing moiety. Remarkably, a number of easily reducible functional groups are compatible with the mild reaction conditions. The preliminary mechanistic study reveals a homogeneous catalysis process and the potential involvement of an η6-arene-ruthenium intermediate. The synthetic utility of this method is demonstrated in the streamlined synthesis of cis-atovaquone, gram-scale reactions and late-stage saturation of complex bioactive compounds. Directing group strategies for selective dearomatization of unactivated aromatic π-systems have remained elusive. Now a homogeneous ruthenium catalyst, aided by a removable directing group, enables the site-selective hydrogenation of less reactive arene moieties in polyaryl compounds.
定向基团策略已被证明对烯烃和羰基中的π键以及C-H和C-C键的位点选择性功能化非常有效,但尚未证明对未活化的芳香π键系统。同时,芳烃催化加氢生成相应的饱和碳环或杂环,为提高药物化合物的分子三维度和sp3碳含量提供了一种直接的方法;然而,在电子和立体无偏芳烃之间实现位点选择性脱芳化仍然具有挑战性。在这里,我们报道了一个钌催化的定向芳烃饱和,它选择性地减少了与定向部分相邻的芳基。值得注意的是,许多易还原的官能团与温和的反应条件相容。初步的机理研究揭示了一个均相的催化过程,以及一个η - 6-芳烃-钌中间体的潜在参与。该方法在顺式阿托伐醌的流线型合成、克级反应和复杂生物活性化合物的后期饱和中得到了证明。
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引用次数: 0
Copper-catalysed enantioconvergent O-alkylation of alcohols with racemic α-tertiary haloamides to access enantioenriched hindered dialkyl ethers 铜催化醇与外消旋α-叔卤酰胺的对映收敛o -烷基化反应得到富集对映体的受阻二烷基醚
IF 44.6 1区 化学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2025-08-28 DOI: 10.1038/s41929-025-01402-w
Jia-Yong Zhang, Ji-Jun Chen, Boming Shen, Jia-Heng Fang, Xuan-Yi Du, Ning-Yuan Yang, Chang-Jiang Yang, Wei-Long Liu, Fu Liu, Zhong-Liang Li, Qiang-Shuai Gu, Zhe Dong, Peiyuan Yu, Xin-Yuan Liu
The cross-coupling of bulky electrophiles and nucleophiles to form sterically congested molecules is a challenging issue in modern synthetic chemistry. Among them, chiral hindered dialkyl ethers are one class of valuable motifs, but the catalytic asymmetric synthesis of such motifs from readily available tertiary alcohols and racemic electrophiles remains underexplored. Challenges arise from the steric hindrance of both reactants, the difficulty in enantiodiscriminating the three substituents of tertiary electrophiles and the low nucleophilicity of bulky alcohols. Here we show the copper-catalysed enantioconvergent radical O-alkylation of diverse alcohols with racemic α-tertiary haloamides to access enantioenriched hindered dialkyl ethers. Successful realization of this strategy relies on the development of anionic N,N,N-ligands with a side arm to form coordinatively saturated key Cu(iii) intermediates, therefore exerting remarkable chemo- and enantioselectivity. The synthetic potential is showcased by the late-stage functionalization and stereodivergent synthesis of four stereoisomers of a product with two stereocentres. The O-alkylation of tertiary alcohols with racemic tertiary electrophiles to access chiral hindered dialkyl ethers has remained elusive. Now this synthetic challenge has been accomplished by copper-catalysed C–O cross-coupling between tertiary haloamides and alcohols using designed ligands.
在现代合成化学中,庞大的亲电试剂和亲核试剂的交叉偶联形成空间拥挤的分子是一个具有挑战性的问题。其中,手性受阻二烷基醚是一类有价值的基序,但从现成的叔醇和外消旋亲电试剂催化不对称合成这类基序的方法仍未得到充分的研究。挑战来自于两种反应物的空间位阻,叔亲电试剂的三个取代基的对映辨别困难以及大体积醇的低亲核性。在这里,我们展示了铜催化不同醇与外消旋α-叔卤酰胺的对映收敛自由基o -烷基化反应,以获得富集对映体的受阻二烷基醚。这一策略的成功实现依赖于阴离子N,N,N配体的发展,这些配体具有侧臂,形成协调饱和的关键Cu(iii)中间体,因此具有显着的化学和对映选择性。具有两个立体中心的产物的四个立体异构体的后期功能化和立体发散合成显示了合成潜力。
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引用次数: 0
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Nature Catalysis
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