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Mapping out multiple sclerosis with spatial transcriptomics 利用空间转录组学绘制多发性硬化症地图
IF 25 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-05 DOI: 10.1038/s41593-024-01798-x
Kellie Horan, Anna C. Williams
In this issue, Alsema, Wijering, Miedema, Kotah et al. and Lerma-Martin, Badia-i-Mompel et al. demonstrate the ever-growing possibilities of spatial transcriptomics by applying it to the spatially heterogeneous disease multiple sclerosis. They validate the technique by comparison to classic pathology and reveal insights into demyelinated lesion markers, pathological cell types and lesion evolution.
在本期杂志中,Alsema、Wijering、Miedema、Kotah 等人和 Lerma-Martin、Badia-i-Mompel 等人将空间转录组学应用于空间异质性疾病多发性硬化症,从而展示了空间转录组学日益增长的可能性。他们通过与传统病理学的比较验证了这一技术,并揭示了脱髓鞘病变标志物、病理细胞类型和病变演变的深刻内涵。
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引用次数: 0
Spatially resolved gene signatures of white matter lesion progression in multiple sclerosis 多发性硬化症白质病变进展的空间分辨基因特征
IF 25 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-05 DOI: 10.1038/s41593-024-01765-6
Astrid M. Alsema, Marion H. C. Wijering, Anneke Miedema, Janssen M. Kotah, Mirjam Koster, Merel Rijnsburger, Hilmar R. J. van Weering, Helga E. de Vries, Wia Baron, Susanne M. Kooistra, Bart J. L. Eggen

Multiple sclerosis (MS) is an inflammatory disease of the central nervous system characterized by myelin loss and progressive neurodegeneration. To understand MS lesion initiation and progression, we generate spatial gene expression maps of white matter (WM) and grey matter (GM) MS lesions. In different MS lesion types, we detect domains characterized by a distinct gene signature, including an identifiable rim around active WM lesions. Expression changes in astrocyte-specific, oligodendrocyte-specific and microglia-specific gene sets characterize the active lesion rims. Furthermore, we identify three WM lesion progression trajectories, predicting how normal-appearing WM can develop into WM active or mixed active–inactive lesions. Our data shed light on the dynamic progression of MS lesions.

多发性硬化症(MS)是一种以髓鞘脱失和进行性神经变性为特征的中枢神经系统炎症性疾病。为了了解多发性硬化症病变的起始和进展,我们生成了多发性硬化症白质(WM)和灰质(GM)病变的空间基因表达图谱。在不同的多发性硬化症病变类型中,我们发现了具有不同基因特征的区域,包括活跃的 WM 病变周围可识别的边缘。星形胶质细胞特异性、少突胶质细胞特异性和小胶质细胞特异性基因组的表达变化是活动性病变边缘的特征。此外,我们还确定了三种 WM 病变进展轨迹,预测了外观正常的 WM 如何发展成 WM 活动性病变或活动-活动混合性病变。我们的数据揭示了多发性硬化病变的动态发展过程。
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引用次数: 0
Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions 细胞类型图揭示皮层下多发性硬化病变中的组织龛位和相互作用
IF 25 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-05 DOI: 10.1038/s41593-024-01796-z
Celia Lerma-Martin, Pau Badia-i-Mompel, Ricardo O. Ramirez Flores, Patricia Sekol, Philipp S. L. Schäfer, Christian J. Riedl, Annika Hofmann, Thomas Thäwel, Florian Wünnemann, Miguel A. Ibarra-Arellano, Tim Trobisch, Philipp Eisele, Denis Schapiro, Maximilian Haeussler, Simon Hametner, Julio Saez-Rodriguez, Lucas Schirmer

Multiple sclerosis (MS) is a chronic inflammatory disease of the central nervous system. Inflammation is gradually compartmentalized and restricted to specific tissue niches such as the lesion rim. However, the precise cell type composition of such niches, their interactions and changes between chronic active and inactive stages are incompletely understood. We used single-nucleus and spatial transcriptomics from subcortical MS and corresponding control tissues to map cell types and associated pathways to lesion and nonlesion areas. We identified niches such as perivascular spaces, the inflamed lesion rim or the lesion core that are associated with the glial scar and a cilia-forming astrocyte subtype. Focusing on the inflamed rim of chronic active lesions, we uncovered cell–cell communication events between myeloid, endothelial and glial cell types. Our results provide insight into the cellular composition, multicellular programs and intercellular communication in tissue niches along the conversion from a homeostatic to a dysfunctional state underlying lesion progression in MS.

多发性硬化症(MS)是一种中枢神经系统慢性炎症性疾病。炎症逐渐分化并局限于特定的组织龛,如病变边缘。然而,人们对这些龛位的精确细胞类型组成、它们之间的相互作用以及慢性活动期和非活动期之间的变化还不完全了解。我们利用皮层下多发性硬化症和相应对照组织的单核和空间转录组学来绘制病变和非病变区域的细胞类型和相关通路。我们确定了与胶质瘢痕和纤毛形成星形胶质细胞亚型相关的壁龛,如血管周围空间、炎性病变边缘或病变核心。我们重点研究了慢性活动性病变的炎症边缘,发现了骨髓细胞、内皮细胞和胶质细胞类型之间的细胞-细胞通讯事件。我们的研究结果让我们深入了解了多发性硬化症病变从平衡状态向功能障碍状态转化过程中组织龛位中的细胞组成、多细胞程序和细胞间通讯。
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引用次数: 0
Leveraging deep single-soma RNA sequencing to explore the neural basis of human somatosensation 利用深度单瘤 RNA 测序探索人类躯体感觉的神经基础
IF 25 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-04 DOI: 10.1038/s41593-024-01794-1
Huasheng Yu, Saad S. Nagi, Dmitry Usoskin, Yizhou Hu, Jussi Kupari, Otmane Bouchatta, Hanying Yan, Suna Li Cranfill, Mayank Gautam, Yijing Su, You Lu, James Wymer, Max Glanz, Phillip Albrecht, Hongjun Song, Guo-Li Ming, Stephen Prouty, John Seykora, Hao Wu, Minghong Ma, Andrew Marshall, Frank L. Rice, Mingyao Li, Håkan Olausson, Patrik Ernfors, Wenqin Luo

The versatility of somatosensation arises from heterogeneous dorsal root ganglion (DRG) neurons. However, soma transcriptomes of individual human (h)DRG neurons—critical information to decipher their functions—are lacking due to technical difficulties. In this study, we isolated somata from individual hDRG neurons and conducted deep RNA sequencing (RNA-seq) to detect, on average, over 9,000 unique genes per neuron, and we identified 16 neuronal types. These results were corroborated and validated by spatial transcriptomics and RNAscope in situ hybridization. Cross-species analyses revealed divergence among potential pain-sensing neurons and the likely existence of human-specific neuronal types. Molecular-profile-informed microneurography recordings revealed temperature-sensing properties across human sensory afferent types. In summary, by employing single-soma deep RNA-seq and spatial transcriptomics, we generated an hDRG neuron atlas, which provides insights into human somatosensory physiology and serves as a foundation for translational work.

躯体感觉的多变性来自异质性背根神经节(DRG)神经元。然而,由于技术上的困难,人类(h)DRG 神经元个体的体节转录组--解读其功能的关键信息--一直缺乏。在这项研究中,我们分离了单个 hDRG 神经元的体节,并进行了深度 RNA 测序(RNA-seq),平均每个神经元检测到超过 9,000 个独特基因,并确定了 16 种神经元类型。空间转录组学和 RNAscope 原位杂交证实并验证了这些结果。跨物种分析揭示了潜在痛觉神经元之间的差异,以及人类特异性神经元类型的可能存在。以分子谱为基础的微神经电图记录显示了人类感觉传入类型的温度感应特性。总之,通过采用单瘤深度RNA-seq和空间转录组学,我们生成了一个hDRG神经元图谱,为人类躯体感觉生理学提供了见解,并为转化工作奠定了基础。
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引用次数: 0
Alcohol’s necessary accessory 酒精的必需品
IF 21.2 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-04 DOI: 10.1038/s41593-024-01802-4
Shari Wiseman
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引用次数: 0
The role of motor cortex in motor sequence execution depends on demands for flexibility 运动皮层在运动序列执行中的作用取决于对灵活性的要求
IF 25 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-04 DOI: 10.1038/s41593-024-01792-3
Kevin G. C. Mizes, Jack Lindsey, G. Sean Escola, Bence P. Ölveczky

The role of the motor cortex in executing motor sequences is widely debated, with studies supporting disparate views. Here we probe the degree to which the motor cortex’s engagement depends on task demands, specifically whether its role differs for highly practiced, or ‘automatic’, sequences versus flexible sequences informed by external cues. To test this, we trained rats to generate three-element motor sequences either by overtraining them on a single sequence or by having them follow instructive visual cues. Lesioning motor cortex showed that it is necessary for flexible cue-driven motor sequences but dispensable for single automatic behaviors trained in isolation. However, when an automatic motor sequence was practiced alongside the flexible task, it became motor cortex dependent, suggesting that an automatic motor sequence fails to consolidate subcortically when the same sequence is produced also in a flexible context. A simple neural network model recapitulated these results and offered a circuit-level explanation. Our results critically delineate the role of the motor cortex in motor sequence execution, describing the conditions under which it is engaged and the functions it fulfills, thus reconciling seemingly conflicting views about motor cortex’s role in motor sequence generation.

关于运动皮层在执行运动序列中的作用存在广泛争议,不同的研究支持不同的观点。在这里,我们探究了运动皮层的参与程度取决于任务需求,特别是在高度练习或 "自动 "序列与根据外部提示灵活执行序列时,运动皮层的作用是否有所不同。为了测试这一点,我们通过对大鼠进行单一序列的过度训练或让它们跟随有指导性的视觉线索来训练它们产生三元素运动序列。对运动皮层进行切除的结果表明,对于灵活的线索驱动运动序列来说,运动皮层是必要的,但对于孤立训练的单一自动行为来说,运动皮层则是可有可无的。然而,当自动运动序列与灵活任务同时进行练习时,它变得依赖于运动皮层,这表明当自动运动序列也在灵活情境下产生时,皮层下无法巩固该序列。一个简单的神经网络模型重现了这些结果,并提供了电路层面的解释。我们的研究结果严格界定了运动皮层在运动序列执行中的作用,描述了运动皮层参与的条件及其发挥的功能,从而调和了关于运动皮层在运动序列生成中作用的看似矛盾的观点。
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引用次数: 0
The fly’s neural blueprint 苍蝇的神经蓝图
IF 21.2 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-04 DOI: 10.1038/s41593-024-01804-2
Henrietta Howells
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引用次数: 0
Astrocytes facilitate brain metastases 星形胶质细胞有助于脑转移
IF 21.2 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-04 DOI: 10.1038/s41593-024-01805-1
George Andrew S. Inglis
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引用次数: 0
Smelling a concept 嗅觉概念
IF 21.2 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-04 DOI: 10.1038/s41593-024-01803-3
Leonie Welberg
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引用次数: 0
Dissecting human brain connectivity across biophysical scales 跨生物物理尺度剖析人脑连通性
IF 21.2 1区 医学 Q1 NEUROSCIENCES Pub Date : 2024-11-01 DOI: 10.1038/s41593-024-01789-y
Neuroscience has identified components that give rise to cognitive function, including molecules, synapses, and brain anatomy, but how connectivity arises from these parts is challenging to uncover. We acquired measurements across these biophysical scales in 98 people and showed that their multiscale cooperation explains person-to-person variability in brain connectivity.
神经科学已经确定了产生认知功能的组成部分,包括分子、突触和大脑解剖结构,但如何从这些部分中产生连通性却很难揭示。我们对 98 人的这些生物物理尺度进行了测量,结果表明,它们之间的多尺度合作可以解释人与人之间大脑连通性的差异。
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引用次数: 0
期刊
Nature neuroscience
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