Plant Physiology and Biochemistry最新文献

The basic helix-loop-helix (bHLH) transcription factors (TFs) play a crucial regulatory role in the growth and development of plants, as well as in their response to environmental stresses. In this study, we identified 94 ChbHLHs from Cerasus humilis, an economically valuable tree native to northern China. We analyzed their evolutionary relationships, gene structures, chromosome distributions, promoter cis-regulatory elements, and collinearity. Our analysis revealed numerous cis-regulatory elements associated with phytohormone responses and abiotic stress within the upstream promoter sequences of ChbHLH genes. The transcriptome results indicated that 84 ChbHLHs exhibited differential expression under drought conditions. Among those with upregulated expression levels, we selected ChMYC2 (ChbHLH93) for further investigation. Overexpressing ChMYC2 in Arabidopsis thaliana led to significantly elevated expression of drought-responsive genes compared to wild-type (WT) plants, resulting in enhanced drought resistance. Furthermore, we identified a gene, ChABI5 (ABA-insensitive 5), which interacts with ChMYC2. This study provides valuable genetic resources for future cultivation efforts aimed at developing stress-resistant and economically viable trees.

As an important starch crop, sweet potato has significant practical importance for maintaining food security worldwide. This study identified differential expressed genes associated with the expansion of tuberous roots by comparing the transcriptome across tuberous roots at the initial period (initiated tuberous roots (ITRs), rapid expansion period (tuberous roots (TRs), fibrous roots (FRs) at the seedling stage, and fibrous roots at the adult stage (unexpanded FRs (UFRs)). sRNA-seq and degradome analyses were performed to reveal the role of miRNAs in tuberous root development in sweet potato. A total of 29,633 genes and 510 miRNAs were differential expressed among FRs, ITRs, TRs, and UFRs. Integrated analyses of these data revealed genes involved in metabolism, hormone response, and signal transduction that might participate in the induction of tuberous root formation, while genes involved in carbohydrate and energy metabolism that might participate in the tuberous root swelling. A joint analysis of miRNAs and DEGs related to tuber development revealed by degradome-seq identified twelve miRNA-target gene pairs involved in gene expression process, hormone response, and metabolism of secondary metabolites that might be key regulators of root tuber development in sweet potato. Moreover, the functions of many miRNA-target gene pairs involved in the initiation of root tuber were related to auxin signaling response, and an exogenous hormone treatment experiment was further performed. The results indicated that auxin treatment had the most significant effect on increasing sweet potato yield, suggesting a dominant role of the auxin pathway in the regulation of sweet potato tuberous root development. Additionally, two miRNA-target pairs, miR319-TCP4 and miR172-AP2, which were identified from the degradome, were verified via 5' RNA ligase-mediated rapid amplification of cDNA ends (RLR-RACE) and tobacco transient cotransformation tests, and their expression was impacted by auxin treatment, which further validated the reliability of our multiomics analysis results. Our research provides new insights into the role of miRNAs in sweet potato root tuber development.

Male sterility in peach (Prunus persica L.), characterized by the absence of fertile pollen grains in the anther, is determined by a recessive allele in homozygosis of the major gene located on chromosome 6. Developing tightly linked molecular markers can help identify appropriate peach parents or male-sterile plants for early culling in segregating progenies, thereby increasing breeding efficiency. In this study, we performed comprehensive research integrating genome-wide association study, bulked segregant analysis, and tissue-specific transcriptome sequencing for precisely characterizing the genes associated with male sterility and fertility in peach. We identified the candidate gene Prupe.6G027000, which encodes an ATP-binding cassette transporter G family member 26 (ABCG26), as a reliable candidate for controlling the targeted traits, as indicated by gene expression profiling and validated by quantitative real-time polymerase chain reaction, in situ hybridization, and virus-induced gene silencing. Prupe.6G027000 was transcribed preferentially on the tapetum and microspore surface, and its transient silencing caused severe pollen abortion in peach. The genotypes of nonsynonymous single-nucleotide variation (T > C) harbored in the coding region of Prupe.6G027000 exhibited approximately 96.2% consistency with male fertile or sterile phenotype in 579 peach accessions. These findings lay the foundation for dissecting the genetic basis of male fertility traits, and facilitating the establishment of a marker-assisted selection system in peaches.

Salinization is a significant global issue causes irreversible damage to plants by reducing osmotic potential, inhibiting seed germination, and impeding water uptake. Seed germination, a crucial step towards the seedling stage is regulated by several hormones and genes, with the balance between abscisic acid and gibberellin being the key mechanism that either promotes or inhibits this process. Additionally, mucilage, a gelatinous substance, is known to provide protection against drought, herbivory, soil adhesion, and seed sinking. However, limited information is available on the structure and thickness of seed mucilage in halophytes under different salinity conditions. In this study, the mucilage structure of the extreme halophyte Schrenkiella parvula was compared with the glycophyte Arabidopsis thaliana in response to salinity. We found differences in the expression levels of genes such as ABI5, RGL2, DOG1, ENO2, and DHAR2, which are involved in seed germination and antioxidant activity, as well as in the mucilage structure of seeds of S. parvula and A. thaliana seeds at different salt concentrations. The responses of seed germination of S. parvula to salinity indicate that it is more salt-tolerant than A. thaliana. Additionally, it was found that S. parvula mucilage decreased under salt conditions but not under mannitol conditions, whereas in A. thaliana mucilage did not change under both conditions, which is one of the adaptation strategies of S. parvula to salt conditions. We believe that these fundamental analyzes will provide a foundation for future molecular and biochemical studies comparing the responses of crops and halophytes to salinity stress.

This study explored morphological, physiological, molecular, and epigenetic responses of tomatoes (Solanum lycopersicum) to soil contamination with polyethylene nanoplastics (PENP; 0.01, 0.1, and 1 gkg^-1 soil). The PENP pollution led to severe changes in plant morphogenesis. The PENP treatments were associated with decreased plant biomass, reduced internode length, delayed flowering, and prolonged fruit ripening. Abnormal inflorescences, flowers, and fruits observed in the PENP-exposed seedlings support genetic changes and meristem dysfunction. Exposure of seedlings to PENP increased H₂O₂ accumulation and damaged membranes, implying oxidative stress. The PENP treatments induced activities of catalase (EC1.11.1.6), peroxidase (EC1.11.1.7), and phenylalanine ammonia-lyase (EC4.3.1.24) enzymes. Soil contamination with PENP also decreased the net photosynthesis, maximum photosystem efficiency, stomatal conductance, and transpiration rate. The nano-pollutant upregulated the expression of the histone deacetylase (HDA3) gene and R2R3MYB transcription factor. However, the AP2a gene was down-regulated in response to the PENP treatment. Besides, EPNP epigenetically contributed to changes in DNA methylation. The concentrations of proline, soluble phenols, and flavonoids also displayed an upward trend in response to the applied PENP treatments. The long-term exposure of seedlings to PENP influenced fruit biomass, firmness, ascorbate, lycopene, and flavonoid content. These findings raise concerns about the hazardous aspects of PENP to agricultural ecosystems and food security.

Continuous misuse of difenoconazole (DFZ) results in farmland contamination, posing risks to crops and human health. Salicylic acid (SA) has been shown to enhance plant resistance and reduce pesticide phytotoxicity and accumulation. However, whether SA effectively reduces DFZ phytotoxicity and accumulation and its underlying mechanisms remain poorly understood. To address this, a short-term indoor experiment and a long-term outdoor pot experiment were conducted to evaluate the potential of SA to alleviate DFZ-induced phytotoxicity and its effects on DFZ uptake, translocation, metabolism, and accumulation. The underlying mechanisms were explored through physiological, biochemical, and gene expression analyses. The results showed that DFZ induced oxidative damage and reduced photosynthesis by 15.6% in wheat. SA upregulated the expression of genes encoding antioxidant enzymes (POD, CAT, SOD1, and SOD2) in the roots and leaves of DFZ-exposed plants, leading to a 7.5%-13.4% increase in antioxidant enzyme activities and a subsequent 9.7%-14.5% decrease in reactive oxygen species levels. Additionally, SA increased the total chlorophyll content by 16.3%, which was enhanced by regulating chlorophyll synthesis and degradation-related genes, thereby improving the net photosynthetic rate by 12.2%. Furthermore, SA upregulated the expression of lignin biosynthesis-related, CYP450, and GST genes, which reduced DFZ uptake and accelerated its degradation. Consequently, the wheat grain DFZ content decreased by 36.2%, thus reducing the health risk index. This study confirms the potential of SA to reduce DFZ phytotoxicity and accumulation. Based on these findings, we recommend using SA in DFZ-contaminated areas to mitigate phytotoxicity and the associated human dietary exposure risks.

Waterlogging is a significant stressor for crops, particularly in lowland regions where soil conditions exacerbate the problem. Waterlogged roots experience hypoxia, disrupting oxidative phosphorylation and triggering metabolic reorganization to sustain energy production. Here, we investigated the metabolic aspects that differentiate two soybean sister lines contrasting for waterlogging tolerance. After 11 days of waterlogging, roots of the tolerant line (PELBR15-7015C) modulated their fermentative metabolism by exporting key metabolites (lactate, malate, and succinate) to the shoot. These metabolites were metabolized in the leaves, supporting photosynthesis and facilitating sugar export to the roots, sustaining a root-shoot-root cycling process. In contrast, the sensitive line (PELBR15-7060) entered a quiescent state, depleting its carbon stock and accumulating protective metabolites. Our study reveals that long-term waterlogging tolerance is primarily achieved through lactate detoxification in the leaves, along with malate and succinate metabolism, enabling root metabolism to withstand hypoxia. This mechanism offers new insights into crop resilience under waterlogged conditions, with implications for modern agriculture as climate change intensifies the frequency and duration of such stress events.

The mycotoxin tenuazonic acid (TeA) inhibits photosynthesis and is expected to be developed as a bioherbicide to control Ageratina adenophora that is one of the most serious invasive alien plants in China. New leaves sprouting from A. adenophora at low temperatures (LT) in early spring are less sensitive to TeA compared to those growing in summer. However, the molecular mechanism of LT-caused decrease in the susceptibility of A. adenophora to TeA is unclear. In this study, three singlet oxygen-responsive genes (SORGs) and three jasmonic acid responsive genes (JARGs) were cloned to further probe the role of singlet oxygen (¹O₂) signaling during TeA-induced disease development in A. adenophora leaves exposed to LT. TeA triggered chloroplast-derived ¹O₂ production as a result of photosystem II (PSII) photoinhibition during leaf lesion formation in A. adenophora. Moreover, TeA indeed induced the expression of SORGs and JARGs as well as a high level of JA generation, activating the ¹O₂ signaling pathway in A. adenophora. LT (12°C) pretreatment can cause PSII photoinhibition and increase the SORG AaAAA-ATPase expression level in A. adenophora leaves, meaning that ¹O₂ signaling was activated by LT. Thus TeA led to less increase of the SORGs and JARGs expression and JA level in plants pretreated by LT compared with non-pretreated plants, although both of them had the same level of ¹O₂ production after TeA treatment. It was concluded that the low susceptibility to TeA of A. adenophora subjected to LT can be attributed to the occurrence of ¹O₂ acclimation.

The SUPERMAN (SUP) proteins, which belong to the single C2H2 zinc finger proteins (ZFP) subclass, participate in various aspects of gene regulation in plant morphogenesis and stress response, but their role in melon (Cucumis melo) is still largely unknown. We identified a total of 28 CmSUP genes in the melon genome, all containing QALGGH conserved domain. Collinearity analysis showed that melon had several homologous gene pairs with Arabidopsis and tomato, indicating the gene duplication events during the evolution. Expression analyses in RT-qPCR and transcriptomic data showed that CmSUPs can be divided into vegetative organ-expressed genes and reproductive organ-expressed genes. Through genetic transformation of melons, we found that overexpression of the CmSUP7 gene causes dwarfism, reduced internode length, as well as decreased leaf and fruit size. These findings indicate that the CmSUP7 gene significantly affects the melon plant growth and fruit development. Through yeast two-hybrid and BiFC assays, we found that CmSUP7 and CmMYB14 transcription factors directly interact in the nucleus. This study comprehensively analyzed the melon CmSUP family genes and revealed the function of the CmSUP7 gene in regulating melon development, which laid the foundation for further improvement in melon breeding.

As a detrimental abiotic stressor, salinity affects plant growth and yield. Domain of unknown function 1644 (DUF1644) is a large plant-specific DUF protein family that is predicted to be involved in abiotic stress responses in plants. However, the biological functions of DUF1644 genes in plants remain largely unexplored, especially in halophytes. Here, we investigated the function of the DUF1644 gene, ZmSIDP1, from the halophyte Zoysia matrella. ZmSIDP1 could enhance the salt tolerance of yeast. Furthermore, the heterologous transformation of the ZmSIDP1 gene in rice demonstrated that transgenic rice plants exhibited better growth under NaCl treatment. The Na ⁺ content was lower in ZmSIDP1 transgenic rice than in wild-type rice under salt stress. ZmSIDP1 transgenic rice showed stronger resistance to oxidative stress induced by salt stress. Further investigation indicated that ZmSIDP1 could interact with an HD-Zip transcription factor, ZmROC1. These results suggest that the ZmSIDP1 gene from the halophyte Z. matrella can positively regulate salt resistance in rice, laying a foundation for the application of salt tolerance genes from halophytes to enhance salt tolerance in rice.