The Mediator (MED) complex is a multi-subunit structure crucial for RNA polymerase II-dependent transcription in eukaryotes. In this study, we investigated the function of a seed-preferential subunit of the rice Mediator complex, namely, OsMED26_2, for the first time. Knockdown of OsMED26_2 in rice reduced plant height and altered panicle morphology with shorter panicles, lesser branching, and fewer seeds per panicle. OsMED26_2 knockdown also led to shorter grains with shorter length and chalky endosperm. A significantly higher percentage of grains with chalkiness (PGWC) and degree of chalky endosperm (DCE) was observed in OsMED26_2 knockdown lines. OsMED26_2-knockdown seeds contained lower starch levels and altered proportions of amylose and amylopectin. Scanning electron microscopy further showed that these changes caused irregular, round, and loosely packed starch granules in the endosperm, contributing to the chalky phenotype. Decreased amylose content and increased grain chalkiness were corroborated by the downregulation of the Waxy (Wx) gene, which is involved in amylose synthesis, and altered expression of AMY3A, CHALK5, FLO4, GPA3, and SUSY3 genes, which regulate grain chalkiness. Our findings demonstrate that OsMED26_2 is critical in regulating panicle architecture, impacting yield, and modulating starch level and composition to control grain chalkiness and thereby suggesting its functional significance especially in manipulating yield attributing grain cooking quality traits of rice.
{"title":"The Mediator complex subunit, OsMED26_2, modulates plant growth, seed set and seed traits related to starch quality in rice.","authors":"Ankita Prusty, Naveen Malik, Rajeev Ranjan, Pinky Agarwal, Swarup Kumar Parida, Sanjay Kapoor, Akhilesh Kumar Tyagi","doi":"10.1016/j.plantsci.2025.112941","DOIUrl":"https://doi.org/10.1016/j.plantsci.2025.112941","url":null,"abstract":"<p><p>The Mediator (MED) complex is a multi-subunit structure crucial for RNA polymerase II-dependent transcription in eukaryotes. In this study, we investigated the function of a seed-preferential subunit of the rice Mediator complex, namely, OsMED26_2, for the first time. Knockdown of OsMED26_2 in rice reduced plant height and altered panicle morphology with shorter panicles, lesser branching, and fewer seeds per panicle. OsMED26_2 knockdown also led to shorter grains with shorter length and chalky endosperm. A significantly higher percentage of grains with chalkiness (PGWC) and degree of chalky endosperm (DCE) was observed in OsMED26_2 knockdown lines. OsMED26_2-knockdown seeds contained lower starch levels and altered proportions of amylose and amylopectin. Scanning electron microscopy further showed that these changes caused irregular, round, and loosely packed starch granules in the endosperm, contributing to the chalky phenotype. Decreased amylose content and increased grain chalkiness were corroborated by the downregulation of the Waxy (Wx) gene, which is involved in amylose synthesis, and altered expression of AMY3A, CHALK5, FLO4, GPA3, and SUSY3 genes, which regulate grain chalkiness. Our findings demonstrate that OsMED26_2 is critical in regulating panicle architecture, impacting yield, and modulating starch level and composition to control grain chalkiness and thereby suggesting its functional significance especially in manipulating yield attributing grain cooking quality traits of rice.</p>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":" ","pages":"112941"},"PeriodicalIF":4.1,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145757378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dehydrins (DHNs) are among the most commonly expressed proteins in plants under a wide range of environmental constraints. Despite their functional relevance, DHNs from halophytic species are scarcely explored and their role in adaptive stress mechanisms remains largely unexplored. In this study, we investigated the role of an FSK2-type DHN of the halophytic species Atriplex halimus (named hereafter AhDHN1) in salt and drought stress response via its overexpression in Arabidopsis thaliana. Phenotypical, physiological, and biochemical, analyses revealed that AhDHN1-overexpressing lines exhibited enhanced tolerance to salt and drought stresses. This improvement was clearly illustrated by a more vigorous root system and enhanced photosynthetic activity. Remarkably, the beneficial effect of AhDHN1 was associated with an improved ability of the transgenic lines to mitigate oxidative damage caused by salinity and drought stress, as evidenced by lower malondialdehyde (MDA) and hydrogen peroxide (H₂O₂) levels and higher activities of the antioxidant enzymes catalase (CAT), superoxide dismutase (SOD), and peroxidase (POD). Furthermore, the enhanced stress tolerance observed corroborates with a stronger induction of stress responsive genes in the transgenic lines. Most interestingly, AhDHN1 overexpression led to significant improvements in yield-related traits, including higher silique number and increased seed size. Overall, these findings not only highlight the importance of AhDHN1 in plant stress tolerance mechanisms but also underscore its potential for sustaining crop yields in the face of challenging environmental conditions.
{"title":"The Atriplex halimus dehydrin AhDHN1 enhances growth, seed size, and yield under salt and drought stress in Arabidopsis.","authors":"Siwar Ghanmi, Ikram Zaidi, Chantal Ebel, Moez Hanin","doi":"10.1016/j.plantsci.2025.112938","DOIUrl":"https://doi.org/10.1016/j.plantsci.2025.112938","url":null,"abstract":"<p><p>Dehydrins (DHNs) are among the most commonly expressed proteins in plants under a wide range of environmental constraints. Despite their functional relevance, DHNs from halophytic species are scarcely explored and their role in adaptive stress mechanisms remains largely unexplored. In this study, we investigated the role of an FSK<sub>2</sub>-type DHN of the halophytic species Atriplex halimus (named hereafter AhDHN1) in salt and drought stress response via its overexpression in Arabidopsis thaliana. Phenotypical, physiological, and biochemical, analyses revealed that AhDHN1-overexpressing lines exhibited enhanced tolerance to salt and drought stresses. This improvement was clearly illustrated by a more vigorous root system and enhanced photosynthetic activity. Remarkably, the beneficial effect of AhDHN1 was associated with an improved ability of the transgenic lines to mitigate oxidative damage caused by salinity and drought stress, as evidenced by lower malondialdehyde (MDA) and hydrogen peroxide (H₂O₂) levels and higher activities of the antioxidant enzymes catalase (CAT), superoxide dismutase (SOD), and peroxidase (POD). Furthermore, the enhanced stress tolerance observed corroborates with a stronger induction of stress responsive genes in the transgenic lines. Most interestingly, AhDHN1 overexpression led to significant improvements in yield-related traits, including higher silique number and increased seed size. Overall, these findings not only highlight the importance of AhDHN1 in plant stress tolerance mechanisms but also underscore its potential for sustaining crop yields in the face of challenging environmental conditions.</p>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":" ","pages":"112938"},"PeriodicalIF":4.1,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145757451","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-12DOI: 10.1016/j.plantsci.2025.112940
Krishnapriya, R Manimekalai, R Gomathi, Van Hay Duong, R Arunkumar, P T Prathima, K Devakumar, K Thamilarasi, H K Mahadeva Swamy, Amaresh, P Govindaraj, Prasanta K Dash
Sugarcane being a high biomass producing crop, massively depletes nutrients from the soil. Thus, optimum supply of mineral nutrients has the greatest impact on growth, development, and yield in sugarcane. Amongst the essential nutrients, the major nutrients nitrogen (N), phosphorus (P) and potassium (K) assume primary importance in cane growth and their availability determines the crop yield. Currently, physiological, molecular, and genetic basis of uptake and assimilation of these nutrients in sugarcane is limited compared to other field crops especially with regard to the root system traits that enhance nutrient uptake. Nonetheless, availability of the polyploid sugarcane genome sequence and genomic information has widened the scope for molecular characterisation of candidate genes involved in uptake, transport and assimilation of N, P, and K. This review summarises the physiological, molecular, and genetic basis of nutrient use efficiency in sugarcane and envisages strategies for production of more cane/crop per unit of nutrient applied.
{"title":"Strategic Considerations for Nutrient Use Efficiency in Sugarcane: Physiological, Molecular and Genetic Perspectives.","authors":"Krishnapriya, R Manimekalai, R Gomathi, Van Hay Duong, R Arunkumar, P T Prathima, K Devakumar, K Thamilarasi, H K Mahadeva Swamy, Amaresh, P Govindaraj, Prasanta K Dash","doi":"10.1016/j.plantsci.2025.112940","DOIUrl":"https://doi.org/10.1016/j.plantsci.2025.112940","url":null,"abstract":"<p><p>Sugarcane being a high biomass producing crop, massively depletes nutrients from the soil. Thus, optimum supply of mineral nutrients has the greatest impact on growth, development, and yield in sugarcane. Amongst the essential nutrients, the major nutrients nitrogen (N), phosphorus (P) and potassium (K) assume primary importance in cane growth and their availability determines the crop yield. Currently, physiological, molecular, and genetic basis of uptake and assimilation of these nutrients in sugarcane is limited compared to other field crops especially with regard to the root system traits that enhance nutrient uptake. Nonetheless, availability of the polyploid sugarcane genome sequence and genomic information has widened the scope for molecular characterisation of candidate genes involved in uptake, transport and assimilation of N, P, and K. This review summarises the physiological, molecular, and genetic basis of nutrient use efficiency in sugarcane and envisages strategies for production of more cane/crop per unit of nutrient applied.</p>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":" ","pages":"112940"},"PeriodicalIF":4.1,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145757418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-11DOI: 10.1016/j.plantsci.2025.112935
Deqi Liu , Lihui Jiang , Lang Jiang , Tingting Zhou , Yanbi Wu , JiaWei Ma , Yiqing Liu , Xuemei Zhang
The ERF transcription factor (TF) family performs a central function in plant adaptation to abiotic stress. This study identified 66 ZoERF genes in the ginger (Zingiber officinale Roscoe), phylogenetically classified into six subgroups. Collinearity analysis showed that segmental duplication is the primary driver in ZoERF expansion and demonstrated ginger’s closer evolutionary affinity to monocots than dicots. Promoter analysis indicated 43 TF binding sites across the family, highlighting complex transcriptional networks governing stress responses. Under high temperature and high humidity (HTHH) stress, ZoERF60 showed significant tissue-wide upregulation (roots/stems/leaves), corroborated by HTHH-inducible GUS activity. While also responsive to individual high-temperature (HT) or high-humidity (HH) treatments, ZoERF60 expression was highest under combined HTHH stress. Functional characterization demonstrated that ZoERF60 has nuclear localization and transcriptional self-activation capacity. Yeast one-hybrid assays confirmed that ZoERF60 specifically binds to the GCC-box element, implicating it in the regulation of downstream stress-related genes. Heterologous overexpression of ZoERF60 in tobacco significantly enhanced tolerance to both HT and HTHH stresses through reduced reactive oxygen species accumulation, elevated antioxidant enzyme activities, increased proline (Pro) biosynthesis, and decreased malondialdehyde content. Conversely, virus-induced gene silencing (VIGS) of ZoERF60 in ginger compromised reactive oxygen species (ROS) scavenging and amplified oxidative damage. This study elucidates ZoERF60’s role as a master regulator of HTHH resilience and provides a genetic resource for climate-resilient crop development.
{"title":"ZoERF60 enhances antioxidant defense and osmotic homeostasis for heat and humidity resilience in ginger","authors":"Deqi Liu , Lihui Jiang , Lang Jiang , Tingting Zhou , Yanbi Wu , JiaWei Ma , Yiqing Liu , Xuemei Zhang","doi":"10.1016/j.plantsci.2025.112935","DOIUrl":"10.1016/j.plantsci.2025.112935","url":null,"abstract":"<div><div>The ERF transcription factor (TF) family performs a central function in plant adaptation to abiotic stress. This study identified 66 <em>ZoERF</em> genes in the ginger (<em>Zingiber officinale</em> Roscoe), phylogenetically classified into six subgroups. Collinearity analysis showed that segmental duplication is the primary driver in <em>ZoERF</em> expansion and demonstrated ginger’s closer evolutionary affinity to monocots than dicots. Promoter analysis indicated 43 TF binding sites across the family, highlighting complex transcriptional networks governing stress responses. Under high temperature and high humidity (HTHH) stress, <em>ZoERF60</em> showed significant tissue-wide upregulation (roots/stems/leaves), corroborated by HTHH-inducible GUS activity. While also responsive to individual high-temperature (HT) or high-humidity (HH) treatments, <em>ZoERF60</em> expression was highest under combined HTHH stress. Functional characterization demonstrated that ZoERF60 has nuclear localization and transcriptional self-activation capacity. Yeast one-hybrid assays confirmed that ZoERF60 specifically binds to the GCC-box element, implicating it in the regulation of downstream stress-related genes. Heterologous overexpression of <em>ZoERF60</em> in tobacco significantly enhanced tolerance to both HT and HTHH stresses through reduced reactive oxygen species accumulation, elevated antioxidant enzyme activities, increased proline (Pro) biosynthesis, and decreased malondialdehyde content. Conversely, virus-induced gene silencing (VIGS) of <em>ZoERF60</em> in ginger compromised reactive oxygen species (ROS) scavenging and amplified oxidative damage. This study elucidates <em>ZoERF60</em>’s role as a master regulator of HTHH resilience and provides a genetic resource for climate-resilient crop development.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"364 ","pages":"Article 112935"},"PeriodicalIF":4.1,"publicationDate":"2025-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145737438","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-10DOI: 10.1016/j.plantsci.2025.112930
N Palermo, F Vurro, G Impollonia, G Giovenali, M Janni, Carla Ceoloni, N Marmiroli
Heat stress is a major constraint on wheat productivity, and short-term heat-shock studies often fail to capture the complexity of field conditions. Here, we assessed heat responses in contrasting durum wheat genotypes (SSD69, SSD397, Svevo, and Kronos) exposed to prolonged high temperatures throughout their life cycle under field-like conditions. Physiological evaluations at flowering and post-flowering showed that the tolerant lines SSD69 and Svevo maintained higher PSII efficiency (Fv/Fm), stomatal conductance, and canopy cooling, thereby sustaining photosynthesis and grain set. In contrast, SSD397 exhibited PSII damage, impaired transpiration, and reduced fertility. Kronos showed intermediate behavior. Biochemical analyses revealed tissue-specific variation in lipid peroxidation: SSD397 accumulated more malondialdehyde (MDA) in spikes, while SSD69 displayed reduced MDA over time, suggesting more efficient detoxification of reactive oxygen species (ROS). Molecular assays identified differential regulation of TdHsp26 alleles. Tolerant lines showed strong TdHsp26-A1 expression, associated with PSII protection, stomatal regulation, and reduced oxidative damage. By contrast, SSD397 exhibited TdHsp26-A1 downregulation and relatively higher TdHsp26-B1 expression, correlating with stress sensitivity. Overall, our results demonstrate that natural sequence variation in TdHsp26 underpins key physiological and biochemical mechanisms of thermotolerance in durum wheat. SSD69, originating from arid North Africa, displayed traits consistent with adaptation to hot environments, including a stay-green phenotype that supports transpirational cooling and yield stability despite reduced biomass. These findings highlight the adaptive value of durum wheat germplasm and provide targets for breeding cultivars resilient to future climate scenarios.
{"title":"Durum wheat germplasm response to high temperatures, the role of small HSP26 in the defense response.","authors":"N Palermo, F Vurro, G Impollonia, G Giovenali, M Janni, Carla Ceoloni, N Marmiroli","doi":"10.1016/j.plantsci.2025.112930","DOIUrl":"https://doi.org/10.1016/j.plantsci.2025.112930","url":null,"abstract":"<p><p>Heat stress is a major constraint on wheat productivity, and short-term heat-shock studies often fail to capture the complexity of field conditions. Here, we assessed heat responses in contrasting durum wheat genotypes (SSD69, SSD397, Svevo, and Kronos) exposed to prolonged high temperatures throughout their life cycle under field-like conditions. Physiological evaluations at flowering and post-flowering showed that the tolerant lines SSD69 and Svevo maintained higher PSII efficiency (Fv/Fm), stomatal conductance, and canopy cooling, thereby sustaining photosynthesis and grain set. In contrast, SSD397 exhibited PSII damage, impaired transpiration, and reduced fertility. Kronos showed intermediate behavior. Biochemical analyses revealed tissue-specific variation in lipid peroxidation: SSD397 accumulated more malondialdehyde (MDA) in spikes, while SSD69 displayed reduced MDA over time, suggesting more efficient detoxification of reactive oxygen species (ROS). Molecular assays identified differential regulation of TdHsp26 alleles. Tolerant lines showed strong TdHsp26-A1 expression, associated with PSII protection, stomatal regulation, and reduced oxidative damage. By contrast, SSD397 exhibited TdHsp26-A1 downregulation and relatively higher TdHsp26-B1 expression, correlating with stress sensitivity. Overall, our results demonstrate that natural sequence variation in TdHsp26 underpins key physiological and biochemical mechanisms of thermotolerance in durum wheat. SSD69, originating from arid North Africa, displayed traits consistent with adaptation to hot environments, including a stay-green phenotype that supports transpirational cooling and yield stability despite reduced biomass. These findings highlight the adaptive value of durum wheat germplasm and provide targets for breeding cultivars resilient to future climate scenarios.</p>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":" ","pages":"112930"},"PeriodicalIF":4.1,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145744015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
SWEET (Sugars Will Eventually be Exported Transporters) proteins are essential sugar transporters involved in plant growth, development, and stress responses. However, a detailed analysis of these proteins in Lotus japonicus, a model legume species, has been lacking. This study identified 25 LjSWEET proteins, each with seven transmembrane helices and two conserved domains. Based on the phylogenetic analysis, LjSWEETs were grouped into clades I, II, and III, with none assigned to clade IV. Structural analysis showed conserved motifs and varied exon-intron patterns, suggesting evolutionary conservation. The proteins were unevenly distributed across five chromosomes, with gene family expansion due to tandem and segmental duplications. Promoter analysis indicated roles in stress, hormone, and developmental responses. Expression profiling of eight LjSWEET genes showed tissue-specific patterns, with LjSWEET1a rapidly up-regulated under PEG6000-induced drought stress in leaves. LjSWEET1a localized to the plasma membrane, and yeast assays confirmed that it specifically transported fructose. Overexpressing LjSWEET1a in Arabidopsis increased fresh weight and primary root length on 1% fructose medium, but not on medium supplemented with glucose or sucrose. Subsequent analyses indicated a significant accumulation of total soluble sugars, particularly fructose, in the transgenic lines. However, these lines showed increased sugar content but reduced fresh weight and higher superoxide anion levels under drought stress (300mM mannitol). Further investigation indicated that excessive fructose disrupted sugar balance, which increased drought sensitivity in transgenic plants. This study provided insights into the evolutionary and functional characteristics of LjSWEET genes, with a particular emphasis on the function analysis of LjSWEET1a, and laid the groundwork for further research on SWEET-mediated growth and stress responses in legumes.
{"title":"Genome-wide identification of the SWEET gene family in Lotus japonicus and functional characterization of LjSWEET1a in plant growth and drought stress response.","authors":"Zhilong Zheng, Xin Meng, Wanqing Qian, Kuiju Niu, Ruying Wang, Jing Li, Yingqi Wang, Lili Zhuang","doi":"10.1016/j.plantsci.2025.112931","DOIUrl":"https://doi.org/10.1016/j.plantsci.2025.112931","url":null,"abstract":"<p><p>SWEET (Sugars Will Eventually be Exported Transporters) proteins are essential sugar transporters involved in plant growth, development, and stress responses. However, a detailed analysis of these proteins in Lotus japonicus, a model legume species, has been lacking. This study identified 25 LjSWEET proteins, each with seven transmembrane helices and two conserved domains. Based on the phylogenetic analysis, LjSWEETs were grouped into clades I, II, and III, with none assigned to clade IV. Structural analysis showed conserved motifs and varied exon-intron patterns, suggesting evolutionary conservation. The proteins were unevenly distributed across five chromosomes, with gene family expansion due to tandem and segmental duplications. Promoter analysis indicated roles in stress, hormone, and developmental responses. Expression profiling of eight LjSWEET genes showed tissue-specific patterns, with LjSWEET1a rapidly up-regulated under PEG6000-induced drought stress in leaves. LjSWEET1a localized to the plasma membrane, and yeast assays confirmed that it specifically transported fructose. Overexpressing LjSWEET1a in Arabidopsis increased fresh weight and primary root length on 1% fructose medium, but not on medium supplemented with glucose or sucrose. Subsequent analyses indicated a significant accumulation of total soluble sugars, particularly fructose, in the transgenic lines. However, these lines showed increased sugar content but reduced fresh weight and higher superoxide anion levels under drought stress (300mM mannitol). Further investigation indicated that excessive fructose disrupted sugar balance, which increased drought sensitivity in transgenic plants. This study provided insights into the evolutionary and functional characteristics of LjSWEET genes, with a particular emphasis on the function analysis of LjSWEET1a, and laid the groundwork for further research on SWEET-mediated growth and stress responses in legumes.</p>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":" ","pages":"112931"},"PeriodicalIF":4.1,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145744044","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-10DOI: 10.1016/j.plantsci.2025.112936
Himanshi Gangwar, Vijay Gahlaut, Vandana Jaiswal
Myo-inositol phosphate synthase (MIPS) is a highly conserved enzyme found across a broad spectrum of organisms, from archaea to higher plants and animals. It catalyzes the first and rate-limiting step in the biosynthesis of myo-inositol (MI), a key molecule in plant metabolism. MI and its derivatives play essential roles in numerous biological processes such as phosphorus storage, auxin transport, cell wall formation, signal transduction, and programmed cell death. MIPS activity directly influences MI levels, affecting seed germination, embryogenesis, and stress tolerance through phosphate and mineral mobilization. MIPS is also central to regulating phytic acid accumulation in seeds, and transgenic silencing has shown potential for improving mineral bioavailability. Multiple isoforms of MIPS exhibit distinct spatial and temporal expression patterns across plant species. Gain-of-function and loss-of-function studies have extensively demonstrated that MIPS plays a vital role in regulating plant responses to abiotic and biotic stresses. Notably, emerging evidence points to a crucial role of MIPS in photoperiodic growth under long-day conditions. Despite the expanding knowledge on MIPS, a review synthesizing its diverse roles in plant physiology and development has been notably lacking. This review addresses this critical gap by providing an up-to-date, in-depth analysis of MIPS's multifaceted functions and regulatory mechanisms.
{"title":"Myo-inositol phosphate synthase (MIPS) as a Molecular Hub: Regulating Plant Growth and Stress Adaptation.","authors":"Himanshi Gangwar, Vijay Gahlaut, Vandana Jaiswal","doi":"10.1016/j.plantsci.2025.112936","DOIUrl":"https://doi.org/10.1016/j.plantsci.2025.112936","url":null,"abstract":"<p><p>Myo-inositol phosphate synthase (MIPS) is a highly conserved enzyme found across a broad spectrum of organisms, from archaea to higher plants and animals. It catalyzes the first and rate-limiting step in the biosynthesis of myo-inositol (MI), a key molecule in plant metabolism. MI and its derivatives play essential roles in numerous biological processes such as phosphorus storage, auxin transport, cell wall formation, signal transduction, and programmed cell death. MIPS activity directly influences MI levels, affecting seed germination, embryogenesis, and stress tolerance through phosphate and mineral mobilization. MIPS is also central to regulating phytic acid accumulation in seeds, and transgenic silencing has shown potential for improving mineral bioavailability. Multiple isoforms of MIPS exhibit distinct spatial and temporal expression patterns across plant species. Gain-of-function and loss-of-function studies have extensively demonstrated that MIPS plays a vital role in regulating plant responses to abiotic and biotic stresses. Notably, emerging evidence points to a crucial role of MIPS in photoperiodic growth under long-day conditions. Despite the expanding knowledge on MIPS, a review synthesizing its diverse roles in plant physiology and development has been notably lacking. This review addresses this critical gap by providing an up-to-date, in-depth analysis of MIPS's multifaceted functions and regulatory mechanisms.</p>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":" ","pages":"112936"},"PeriodicalIF":4.1,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145744039","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Arabidopsis PHRAGMOPLAST ORIENTING KINESIN1 (POK1) and POK2 proteins belonged to kinesin-12 class play an essential role in regulating the orientation of the division plane. It has been found that the loss of function of POK1 and POK2 leads to misoriented division planes while maintaining normal cytokinesis. The pok1 pok2 mutant plants exhibit a severely dwarfed stature accompanied by miniature organ tissues. Here, we investigate the roles of POK1 and POK2 in the post-cytokinetic vesicle trafficking that is necessary for auxin signaling. The growth phenotypes, including cotyledon development, distribution of starch granule in the root cap, and patterning of cotyledon veins and roots, are defective in the pok1 pok2 mutant. Additionally, we observed a delayed root gravitropic response in response to gravity stimulus and altered auxin distribution when subjected to exogenous auxin treatment in the pok1 pok2 seedlings. Confocal imaging demonstrated that the auxin transporters, such as PIN FORMED 2 (PIN2) and AUXIN RESISTANT 1 (AUX1), mislocalize at the non-polar lateral membrane and the oblique plasma membrane (PM). Investigations into protein trafficking indicated that the endocytic recycling of the PIN2 transporter and the R-SNARE VAMP721 to the PM is hindered in the pok1 pok2 mutant seedlings. Furthermore, the roots of the pok1 pok2 mutants display abnormal organization and orientation of the actin filaments. These findings suggest that the pair of kinesins POK1 and POK2 are involved in orchestrating plant growth by effects on the membrane trafficking related to auxin distribution and responses, as well as cell division processes.
{"title":"Two kinesin-12 class proteins are involved in post-cytokinetic membrane trafficking required for auxin responses in Arabidopsis.","authors":"Wencai Qi, Xiaoru Li, Yuqin Sun, Aiyu Guo, Peipei Zhang, Liang Zhang","doi":"10.1016/j.plantsci.2025.112934","DOIUrl":"https://doi.org/10.1016/j.plantsci.2025.112934","url":null,"abstract":"<p><p>The Arabidopsis PHRAGMOPLAST ORIENTING KINESIN1 (POK1) and POK2 proteins belonged to kinesin-12 class play an essential role in regulating the orientation of the division plane. It has been found that the loss of function of POK1 and POK2 leads to misoriented division planes while maintaining normal cytokinesis. The pok1 pok2 mutant plants exhibit a severely dwarfed stature accompanied by miniature organ tissues. Here, we investigate the roles of POK1 and POK2 in the post-cytokinetic vesicle trafficking that is necessary for auxin signaling. The growth phenotypes, including cotyledon development, distribution of starch granule in the root cap, and patterning of cotyledon veins and roots, are defective in the pok1 pok2 mutant. Additionally, we observed a delayed root gravitropic response in response to gravity stimulus and altered auxin distribution when subjected to exogenous auxin treatment in the pok1 pok2 seedlings. Confocal imaging demonstrated that the auxin transporters, such as PIN FORMED 2 (PIN2) and AUXIN RESISTANT 1 (AUX1), mislocalize at the non-polar lateral membrane and the oblique plasma membrane (PM). Investigations into protein trafficking indicated that the endocytic recycling of the PIN2 transporter and the R-SNARE VAMP721 to the PM is hindered in the pok1 pok2 mutant seedlings. Furthermore, the roots of the pok1 pok2 mutants display abnormal organization and orientation of the actin filaments. These findings suggest that the pair of kinesins POK1 and POK2 are involved in orchestrating plant growth by effects on the membrane trafficking related to auxin distribution and responses, as well as cell division processes.</p>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":" ","pages":"112934"},"PeriodicalIF":4.1,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145743956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-08DOI: 10.1016/j.plantsci.2025.112933
Yun Li , Yuxue Zhao , Fuxing Xiang , Fangying Chen , Yanrui Xu , Xiaohu Lin , Jihan Cui , Yucui Han
To elucidate the mechanisms underlying saline-alkali tolerance in foxtail millet, a comparative proteomic analysis was conducted using two varieties with contrasting tolerance levels: JK3 (tolerant) and B175 (sensitive). Leaf samples were collected at 0 h, 12 h, and 24 h after saline-alkali stress treatment. The differentially expressed proteins unique to JK3 were significantly enriched in metabolic pathways such as glutathione, alanine, aspartate, and glutamate metabolism. Integrated proteomic and transcriptomic analysis revealed 17 co-upregulated differentially expressed genes exclusive to JK3. Among these, SiGSTU18 (Seita.9G347000), involved in glutathione metabolism, was identified as a key candidate gene for saline-alkali tolerance. Functional studies demonstrated that under saline-alkali stress, SiGSTU18-silenced plants exhibited significantly reduced plant height, fresh weight, and dry weight compared to non-silenced controls. Physiologically, silencing SiGSTU18 disrupted ion homeostasis and resulted in decreased catalase (CAT) activity and proline (Pro) content, leading to elevated hydrogen peroxide (H₂O₂) levels. This oxidative stress increased malondialdehyde (MDA) content, ultimately inhibiting plant growth. To further validate the role of SiGSTU18, glutamic acid—a downstream metabolite—was exogenously applied. The addition of glutamic acid significantly alleviated growth inhibition under saline-alkali stress compared to untreated plants. These results indicate that SiGSTU18 positively regulates saline-alkali tolerance in foxtail millet. This study provides important theoretical insights into the molecular mechanisms of stress tolerance in foxtail millet and offers valuable genetic resources for breeding saline-alkali tolerant varieties.
{"title":"SiGSTU18 positively regulates saline-alkali tolerance in foxtail millet through glutathione metabolism and glutamic acid-mediated alleviation of oxidative stress and ion toxicity","authors":"Yun Li , Yuxue Zhao , Fuxing Xiang , Fangying Chen , Yanrui Xu , Xiaohu Lin , Jihan Cui , Yucui Han","doi":"10.1016/j.plantsci.2025.112933","DOIUrl":"10.1016/j.plantsci.2025.112933","url":null,"abstract":"<div><div>To elucidate the mechanisms underlying saline-alkali tolerance in foxtail millet, a comparative proteomic analysis was conducted using two varieties with contrasting tolerance levels: JK3 (tolerant) and B175 (sensitive). Leaf samples were collected at 0 h, 12 h, and 24 h after saline-alkali stress treatment. The differentially expressed proteins unique to JK3 were significantly enriched in metabolic pathways such as glutathione, alanine, aspartate, and glutamate metabolism. Integrated proteomic and transcriptomic analysis revealed 17 co-upregulated differentially expressed genes exclusive to JK3. Among these, <em>SiGSTU18</em> (<em>Seita.9G347000</em>), involved in glutathione metabolism, was identified as a key candidate gene for saline-alkali tolerance. Functional studies demonstrated that under saline-alkali stress, <em>SiGSTU18</em>-silenced plants exhibited significantly reduced plant height, fresh weight, and dry weight compared to non-silenced controls. Physiologically, silencing <em>SiGSTU18</em> disrupted ion homeostasis and resulted in decreased catalase (CAT) activity and proline (Pro) content, leading to elevated hydrogen peroxide (H₂O₂) levels. This oxidative stress increased malondialdehyde (MDA) content, ultimately inhibiting plant growth. To further validate the role of <em>SiGSTU18</em>, glutamic acid—a downstream metabolite—was exogenously applied. The addition of glutamic acid significantly alleviated growth inhibition under saline-alkali stress compared to untreated plants. These results indicate that <em>SiGSTU18</em> positively regulates saline-alkali tolerance in foxtail millet. This study provides important theoretical insights into the molecular mechanisms of stress tolerance in foxtail millet and offers valuable genetic resources for breeding saline-alkali tolerant varieties.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"364 ","pages":"Article 112933"},"PeriodicalIF":4.1,"publicationDate":"2025-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145725418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-08DOI: 10.1016/j.plantsci.2025.112927
Chunyu Liu , Yonghui Zhu , John B. Golding , Penta Pristijono , Yue Guan , Youjian Yu , Yong He , Yongxin Li , Zhujun Zhu , Lei Ru
Viscosity is an important quality trait of processed tomato products such as tomato juice and ketchup. The viscosity is partially determined by the degree of pectin methylesterification regulated by pectin methylesterase (PME) where pectin methylesterase inhibitors (PMEIs) have been shown to play a key role in regulating PME activity. However, the specific role of PMEIs in regulating the viscosity of processed tomato products remains unexplored. In this study, we identified a candidate PMEI gene (SlPMEI3) in manipulating PME activity in ripe tomato fruit by gene expression analysis, molecular docking and prokaryotic verification. The function of SlPMEI3 was further investigated by genetic modification. The results showed that the overexpression of SlPMEI3 suppressed PME activity by 50 %, leading to a 50 % increase in pectin methyl esterification and resulting in the enhanced viscosity of tomato juice and ketchup. Furthermore, the overexpression of SlPMEI3 resulted in higher fruit pH values, as well as greater precipitation ratio of tomato fruit. The transgenic tomato plants with up-regulated PME activity were significantly taller with earlier flowering times. In addition, the transgenic fruit had greater pericarp ratio but had reduced fruit size, yield and seed number. In summary, this study showed that overexpression of SlPMEI3 enhanced the viscosity of processed tomato products which provide new insights and opportunities for targeted quality improvement for the tomato processing industry.
{"title":"Overexpression of SlPMEI3 in tomato increased the viscosity of ketchup and juice","authors":"Chunyu Liu , Yonghui Zhu , John B. Golding , Penta Pristijono , Yue Guan , Youjian Yu , Yong He , Yongxin Li , Zhujun Zhu , Lei Ru","doi":"10.1016/j.plantsci.2025.112927","DOIUrl":"10.1016/j.plantsci.2025.112927","url":null,"abstract":"<div><div>Viscosity is an important quality trait of processed tomato products such as tomato juice and ketchup. The viscosity is partially determined by the degree of pectin methylesterification regulated by pectin methylesterase (PME) where pectin methylesterase inhibitors (PMEIs) have been shown to play a key role in regulating PME activity. However, the specific role of PMEIs in regulating the viscosity of processed tomato products remains unexplored. In this study, we identified a candidate PMEI gene (<em>SlPMEI3</em>) in manipulating PME activity in ripe tomato fruit by gene expression analysis, molecular docking and prokaryotic verification. The function of <em>SlPMEI3</em> was further investigated by genetic modification. The results showed that the overexpression of <em>SlPMEI3</em> suppressed PME activity by 50 %, leading to a 50 % increase in pectin methyl esterification and resulting in the enhanced viscosity of tomato juice and ketchup. Furthermore, the overexpression of <em>SlPMEI3</em> resulted in higher fruit pH values, as well as greater precipitation ratio of tomato fruit. The transgenic tomato plants with up-regulated PME activity were significantly taller with earlier flowering times. In addition, the transgenic fruit had greater pericarp ratio but had reduced fruit size, yield and seed number. In summary, this study showed that overexpression of <em>SlPMEI3</em> enhanced the viscosity of processed tomato products which provide new insights and opportunities for targeted quality improvement for the tomato processing industry.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"364 ","pages":"Article 112927"},"PeriodicalIF":4.1,"publicationDate":"2025-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145725410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}