WUSCHEL-related homeobox (WOX) transcription factors (TFs), which constitute a plant-specific homeodomain-containing family, play diverse roles in growth and development. However, their function in pathogen-induced stress responses remains largely unexplored. In this study, we identified 11 SsWOX family members in the sugarcane reference genome, which were classified into ancient, intermediate, and modern/WUSCHEL clades. Comparative analyses of motif composition, exon–intron organization, and cis-regulatory elements revealed conserved evolutionary relationships among SsWOX family genes. Expression profiling using RNA-seq and qRT-PCR during sugarcane–smut (Sporisorium scitamineum) interactions demonstrated distinct expression patterns of several SsWOX genes, with SsWOX13 showing robust induction, indicating its potential role in smut resistance. Transient overexpression of SsWOX13 in Nicotiana benthamiana led to hypersensitive response (HR)-associated programmed cell death, evidenced by elevated electrolyte leakage, increased reactive oxygen species accumulation, and upregulation of HR- and defense-related genes. Furthermore, transcriptional self-activation assays confirmed that SsWOX13 possesses transcriptional activation activity, functioning as a TF in sugarcane. Collectively, these results expand our understanding of sugarcane WOX TFs and indicate that sugarcane WOX13 positively regulates HR-mediated immunity.
{"title":"SsWOX13, a novel sugarcane WOX transcription factor, confers disease resistance via HR-mediated programmed cell death in Nicotiana benthamiana: Insights from a genome-wide survey","authors":"Farhan Goher , Faiza Shafique Khan , Shuo-Hang Zhang , Shengren Sun , Wei Zhang , Yinjie Cheng , Qinnan Wang","doi":"10.1016/j.plantsci.2026.113024","DOIUrl":"10.1016/j.plantsci.2026.113024","url":null,"abstract":"<div><div>WUSCHEL-related homeobox (WOX) transcription factors (TFs), which constitute a plant-specific homeodomain-containing family, play diverse roles in growth and development. However, their function in pathogen-induced stress responses remains largely unexplored. In this study, we identified 11 <em>SsWOX</em> family members in the sugarcane reference genome, which were classified into ancient, intermediate, and modern/WUSCHEL clades. Comparative analyses of motif composition, exon–intron organization, and <em>cis</em>-regulatory elements revealed conserved evolutionary relationships among <em>SsWOX</em> family genes. Expression profiling using RNA-seq and qRT-PCR during sugarcane–smut (<em>Sporisorium scitamineum</em>) interactions demonstrated distinct expression patterns of several <em>SsWOX</em> genes, with <em>SsWOX13</em> showing robust induction, indicating its potential role in smut resistance. Transient overexpression of <em>SsWOX13</em> in <em>Nicotiana benthamiana</em> led to hypersensitive response (HR)-associated programmed cell death, evidenced by elevated electrolyte leakage, increased reactive oxygen species accumulation, and upregulation of HR- and defense-related genes. Furthermore, transcriptional self-activation assays confirmed that <em>SsWOX13</em> possesses transcriptional activation activity, functioning as a TF in sugarcane. Collectively, these results expand our understanding of sugarcane <em>WOX</em> TFs and indicate that sugarcane <em>WOX13</em> positively regulates HR-mediated immunity.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113024"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146132910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-10DOI: 10.1016/j.plantsci.2026.113052
Shuwen Wang , Yalan Ye , Xurui Yang , Fanbin Nie , Jianke Dong , Jianhua Zhou , Xijuan Zhao , Botao Song , Huiling Zhang
Anthocyanins are a class of water-soluble flavonoid pigments that play crucial roles in plant physiology and human health. Their biosynthesis is regulated by the MYB-bHLH-WD40 transcriptional complex, in which MYB transcription factors serve as the key determinants. However, the function of repressor-type MYBs in tuber crops such as potato remains poorly understood. Here we show that the R2R3-MYB transcription factor StMYB3 acts as a repressor of anthocyanin biosynthesis in potato. Transient-expression assays revealed that co-expression of StMYB3 with StAN2 (an R2R3 MYB activator) markedly reduced anthocyanin accumulation in leaves, and tuber skins of StMYB3-over-expressing lines exhibited a significant decrease in anthocyanin content. Mechanistic analyses demonstrate that both StMYB3 and StAN2 interact with StAN1 (an anthocyanin related bHLH). StMYB3 not only suppresses the StAN2-mediated transcriptional activation of anthocyanin biosynthesis genes (StCHS, StF3H, StF3'5'H, and StGST) but also directly represses the promoter activity of bHLH transcription factor StAN1. Moreover, StMYB3 and StAN2 form a mutually reinforcing positive-feedback loop at the transcriptional level. These results uncovers a StMYB3-StAN1-StAN2 regulatory module whose dynamics, driven by competition and bidirectional feedback, precisely control anthocyanin accumulation. This finding provides a reference for breeding potatoes with high anthocyanin content.
{"title":"StMYB3 controls anthocyanin biosynthesis in potato via its dual regulatory role on StAN2","authors":"Shuwen Wang , Yalan Ye , Xurui Yang , Fanbin Nie , Jianke Dong , Jianhua Zhou , Xijuan Zhao , Botao Song , Huiling Zhang","doi":"10.1016/j.plantsci.2026.113052","DOIUrl":"10.1016/j.plantsci.2026.113052","url":null,"abstract":"<div><div>Anthocyanins are a class of water-soluble flavonoid pigments that play crucial roles in plant physiology and human health. Their biosynthesis is regulated by the MYB-bHLH-WD40 transcriptional complex, in which MYB transcription factors serve as the key determinants. However, the function of repressor-type MYBs in tuber crops such as potato remains poorly understood. Here we show that the R2R3-MYB transcription factor <em>StMYB3</em> acts as a repressor of anthocyanin biosynthesis in potato. Transient-expression assays revealed that co-expression of StMYB3 with StAN2 (an R2R3 MYB activator) markedly reduced anthocyanin accumulation in leaves, and tuber skins of <em>StMYB3</em>-over-expressing lines exhibited a significant decrease in anthocyanin content. Mechanistic analyses demonstrate that both StMYB3 and StAN2 interact with StAN1 (an anthocyanin related bHLH). StMYB3 not only suppresses the StAN2-mediated transcriptional activation of anthocyanin biosynthesis genes (<em>StCHS</em>, <em>StF3H</em>, <em>StF3'5'H</em>, and <em>StGST</em>) but also directly represses the promoter activity of bHLH transcription factor <em>StAN1</em>. Moreover, <em>StMYB3</em> and <em>StAN2</em> form a mutually reinforcing positive-feedback loop at the transcriptional level. These results uncovers a StMYB3-StAN1-StAN2 regulatory module whose dynamics, driven by competition and bidirectional feedback, precisely control anthocyanin accumulation. This finding provides a reference for breeding potatoes with high anthocyanin content.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113052"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146181888","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-10DOI: 10.1016/j.plantsci.2026.113050
Qiming Hu , Hamza Sohail , Yuanyuan Bian , BingKun Yang , Xiaodong Yang , Xuehao Chen , Xiaohua Qi , Xuewen Xu
Dwarf mutants in higher plants serve as ideal models for studying the mechanisms underlying stem elongation and plant development. Moreover, the compact stature of dwarf plants renders them advantageous for high-density planting and mechanized harvesting. In this study, we identified a naturally occurring super-compact cucumber mutant, designated scp159. Due to reduced cell elongation, scp159 exhibits an extremely compact plant morphology. Using bulk segregant analysis coupled with whole-genome sequencing and fine genetic mapping, we narrowed down the scp-4 locus to a 67.6 kb region on chromosome 6. Through resequencing and molecular cloning, CsSCP4 was identified as a candidate gene underlying the scp-4 locus, which encodes 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1, a key enzyme involved in brassinosteroid (BR) biosynthesis. Compared to the wild-type YZ205A, the scp159 mutant harbors a single-base deletion (adenine) within the fourth exon region of the CsSCP4. Measurements of endogenous hormone levels confirmed a significant reduction in BR levels in scp159 mutants. Exogenous application of brassinolide at a concentration of 0.2 mg/L effectively alleviated the super-compact phenotype. Silencing of the CsSCP4 gene in cucumber plants resulted in reduced plant height. Comparative transcriptomic analysis further revealed significant downregulation of positive regulators of the BR signaling pathway, such as BAK1 and BSK, and marked upregulation of the negative regulator BKI1 in the scp159 mutant. Furthermore, differential expression was observed in genes associated with auxin and gibberellin biosynthesis and signaling pathways. Collectively, our findings demonstrate that the CsSCP4 gene plays a crucial role in BR biosynthesis, thus significantly influencing cucumber plant growth and development.
{"title":"A single nucleotide deletion in CsSCP4 disrupts brassinosteroid biosynthesis and confers a super compact phenotype in cucumber","authors":"Qiming Hu , Hamza Sohail , Yuanyuan Bian , BingKun Yang , Xiaodong Yang , Xuehao Chen , Xiaohua Qi , Xuewen Xu","doi":"10.1016/j.plantsci.2026.113050","DOIUrl":"10.1016/j.plantsci.2026.113050","url":null,"abstract":"<div><div>Dwarf mutants in higher plants serve as ideal models for studying the mechanisms underlying stem elongation and plant development. Moreover, the compact stature of dwarf plants renders them advantageous for high-density planting and mechanized harvesting. In this study, we identified a naturally occurring super-compact cucumber mutant, designated scp159. Due to reduced cell elongation, scp159 exhibits an extremely compact plant morphology. Using bulk segregant analysis coupled with whole-genome sequencing and fine genetic mapping, we narrowed down the <em>scp-4</em> locus to a 67.6 kb region on chromosome 6. Through resequencing and molecular cloning, <em>CsSCP4</em> was identified as a candidate gene underlying the <em>scp-4</em> locus, which encodes 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1, a key enzyme involved in brassinosteroid (BR) biosynthesis. Compared to the wild-type YZ205A, the scp159 mutant harbors a single-base deletion (adenine) within the fourth exon region of the <em>CsSCP4</em>. Measurements of endogenous hormone levels confirmed a significant reduction in BR levels in scp159 mutants. Exogenous application of brassinolide at a concentration of 0.2 mg/L effectively alleviated the super-compact phenotype. Silencing of the <em>CsSCP4</em> gene in cucumber plants resulted in reduced plant height. Comparative transcriptomic analysis further revealed significant downregulation of positive regulators of the BR signaling pathway, such as <em>BAK1</em> and <em>BSK</em>, and marked upregulation of the negative regulator <em>BKI1</em> in the scp159 mutant. Furthermore, differential expression was observed in genes associated with auxin and gibberellin biosynthesis and signaling pathways. Collectively, our findings demonstrate that the <em>CsSCP4</em> gene plays a crucial role in BR biosynthesis, thus significantly influencing cucumber plant growth and development.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113050"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146166335","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-01-31DOI: 10.1016/j.plantsci.2026.113016
Tingting Xu , Qun Yang , Ran Li , Jianping Wang , Zhishan Luo , Daoyong Gong , Leihao Weng , Xiaoshan Huang , Debao Fu , Jing Li
Kongyu 131 (Oryza sativa ssp. japonica) is an elite rice cultivar widely planted in Heilongjiang Province, China. Here, we subjected Kongyu 131 to ethyl methanesulfonate (EMS)-induced mutagenesis to establish a genome-wide mutant library. On this basis, we generated 8770 M2 lines, and systematically screened 2215 lines with 42 distinct phenotypic variations across all developmental stages. Then, we employed a three-dimensional (3D) pooling strategy to combine 6144 M3 DNA samples into 224 multiplexed pools. By using the TILLING-seq (Targeting Induced Local Lesions in Genomes sequencing) approach, we identified 84 mutants across five key genes (GS3, Pi21, CSA, OsRR22, and OsaTRZ2), and validated their allelic variations. Phenotypic screening generated 18 lines with superior plant architecture, including a novel OsSPL14 allele identified via MutMap+ analysis. Whole-genome sequencing (WGS) of three M2 lines and TILLING-seq of mutants of the five key genes demonstrated a high mutation density (1 mutation per 121–288 kb). This 3D-pooled and genome-saturated EMS mutant library represents a robust resource for advancing functional genomic studies and precision breeding in rice.
空玉131 (Oryza sativa ssp)粳稻(japonica)是中国黑龙江省广泛种植的优良水稻品种。在此,我们对空玉131进行了甲基磺酸乙酯(EMS)诱变,建立了全基因组突变文库。在此基础上,我们获得了8770个M2株系,并系统筛选了2215个株系,在所有发育阶段有42个不同的表型变异。然后,我们采用三维(3D)池策略将6144 M3 DNA样本组合到224个多路池中。通过TILLING-seq (Targeting Induced Local lesion in Genomes sequencing)方法,我们鉴定了5个关键基因(GS3、Pi21、CSA、OsRR22和OsaTRZ2)中的84个突变体,并验证了它们的等位基因变异。表型筛选产生了18个具有优良植株结构的株系,其中包括一个通过MutMap+分析鉴定出的新的OsSPL14等位基因。3个M2系的全基因组测序和5个关键基因突变体的tillling -seq结果显示,突变密度较高(每121-288kb有1个突变)。这个3d池和基因组饱和的EMS突变文库为推进水稻功能基因组研究和精确育种提供了强大的资源。
{"title":"Construction of Kongyu 131 mutant library provides genetic resources for rice functional genomics and germplasm improvement","authors":"Tingting Xu , Qun Yang , Ran Li , Jianping Wang , Zhishan Luo , Daoyong Gong , Leihao Weng , Xiaoshan Huang , Debao Fu , Jing Li","doi":"10.1016/j.plantsci.2026.113016","DOIUrl":"10.1016/j.plantsci.2026.113016","url":null,"abstract":"<div><div>Kongyu 131 (<em>Oryza sativa</em> ssp. <em>japonica</em>) is an elite rice cultivar widely planted in Heilongjiang Province, China. Here, we subjected Kongyu 131 to ethyl methanesulfonate (EMS)-induced mutagenesis to establish a genome-wide mutant library. On this basis, we generated 8770 M2 lines, and systematically screened 2215 lines with 42 distinct phenotypic variations across all developmental stages. Then, we employed a three-dimensional (3D) pooling strategy to combine 6144 M3 DNA samples into 224 multiplexed pools. By using the TILLING-seq (Targeting Induced Local Lesions in Genomes sequencing) approach, we identified 84 mutants across five key genes (<em>GS3</em>, <em>Pi21</em>, <em>CSA</em>, <em>OsRR22</em>, and <em>OsaTRZ2</em>), and validated their allelic variations. Phenotypic screening generated 18 lines with superior plant architecture, including a novel <em>OsSPL14</em> allele identified via MutMap+ analysis. Whole-genome sequencing (WGS) of three M2 lines and TILLING-seq of mutants of the five key genes demonstrated a high mutation density (1 mutation per 121–288 kb). This 3D-pooled and genome-saturated EMS mutant library represents a robust resource for advancing functional genomic studies and precision breeding in rice.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113016"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146107015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-03DOI: 10.1016/j.plantsci.2026.113021
Jia Liu , Zhuo Chen , Ling Sun , Tingyan Huang , Yu Chen , Xiaohui Li , Hu Liu , Xinyi Huang , Yan Peng , Baomin Feng
Poly(ADP-ribosyl)ation or PARylation is required for immune transcription and defense against microbes in plants. However, the mechanisms underlying the PARylation-mediated transcriptional regulation are largely unknown. In this study, an AT-hook motif nuclear localized transcription factor, AHL13, was identified as an interactor of poly (ADP-ribose), the polymer products of PARylation. The knock-out and over-expression experiments suggest that AHL13 functions as a negative regulator of Arabidopsis immunity. RNA seq results showed that a group of defense-related genes were repressed by AHL13 upon bacterial infection. AHL13 could directly bind to the AT-rich sequences in the promoters of the target genes in the EMSA and MST assays. The PAR polymers directly interact with AHL13 with high affinity and significantly suppress its interaction with the AT-rich DNA, suggesting that PARylation might promote immune transcription through a repressor-repelling mechanism. In summary, this study revealed that the PAR-AHL13 interaction plays significant roles in immune gene expression in Arabidopsis.
{"title":"An AT-hook motif nuclear protein AHL13 interacts with Poly(ADP-ribose) to regulate Arabidopsis immunity","authors":"Jia Liu , Zhuo Chen , Ling Sun , Tingyan Huang , Yu Chen , Xiaohui Li , Hu Liu , Xinyi Huang , Yan Peng , Baomin Feng","doi":"10.1016/j.plantsci.2026.113021","DOIUrl":"10.1016/j.plantsci.2026.113021","url":null,"abstract":"<div><div>Poly(ADP-ribosyl)ation or PARylation is required for immune transcription and defense against microbes in plants. However, the mechanisms underlying the PARylation-mediated transcriptional regulation are largely unknown. In this study, an AT-hook motif nuclear localized transcription factor, AHL13, was identified as an interactor of poly (ADP-ribose), the polymer products of PARylation. The knock-out and over-expression experiments suggest that AHL13 functions as a negative regulator of <em>Arabidopsis</em> immunity. RNA seq results showed that a group of defense-related genes were repressed by AHL13 upon bacterial infection. AHL13 could directly bind to the AT-rich sequences in the promoters of the target genes in the EMSA and MST assays. The PAR polymers directly interact with AHL13 with high affinity and significantly suppress its interaction with the AT-rich DNA, suggesting that PARylation might promote immune transcription through a repressor-repelling mechanism. In summary, this study revealed that the PAR-AHL13 interaction plays significant roles in immune gene expression in <em>Arabidopsis</em>.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113021"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146126229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-06DOI: 10.1016/j.plantsci.2026.113030
Yifan Dong , Golam Jalal Ahammed
Root-associated beneficial microbes can enhance plant resistance at the systemic level without triggering constitutive defense activation, yet how such durable and low-cost immune states are established remains poorly understood. Plant-Trichoderma spp. mutualism represents a well-characterized model of beneficial plant-microbe interactions in which induced resistance is maintained despite the absence of sustained transcriptional defense outputs. Accumulating evidence implicates small RNAs, including microRNAs (miRNAs), small interfering RNAs (siRNAs), and long non-coding RNAs (lncRNAs), as central regulators of immune priming during Trichoderma-plant interactions. Such RNA-mediated processes shape defense responsiveness, hormonal sensitivity, and chromatin-associated regulation. In parallel, epigenetic modifications have been linked to the persistence and reversibility of primed immune states. However, these regulatory layers are often examined separately, limiting mechanistic understanding of how immune states are both stabilized and flexibly reprogrammed. In this conceptual review, we synthesize recent advances to examine Trichoderma-induced systemic immunity through an integrated RNA-epigenetic perspective. By viewing RNA-mediated regulation and epigenetic modification as components of a functional continuum, we illustrate how immune priorities defined by small RNAs can be consolidated into chromatin states that preserve inducibility without imposing constitutive costs. This framework provides a coherent explanation for how Trichoderma-induced immunity is organized across molecular layers in plants.
{"title":"Mechanisms of Trichoderma-induced plant immunity: An RNA-epigenetic perspective","authors":"Yifan Dong , Golam Jalal Ahammed","doi":"10.1016/j.plantsci.2026.113030","DOIUrl":"10.1016/j.plantsci.2026.113030","url":null,"abstract":"<div><div>Root-associated beneficial microbes can enhance plant resistance at the systemic level without triggering constitutive defense activation, yet how such durable and low-cost immune states are established remains poorly understood. Plant-<em>Trichoderma</em> spp. mutualism represents a well-characterized model of beneficial plant-microbe interactions in which induced resistance is maintained despite the absence of sustained transcriptional defense outputs. Accumulating evidence implicates small RNAs, including microRNAs (miRNAs), small interfering RNAs (siRNAs), and long non-coding RNAs (lncRNAs), as central regulators of immune priming during <em>Trichoderma</em>-plant interactions. Such RNA-mediated processes shape defense responsiveness, hormonal sensitivity, and chromatin-associated regulation. In parallel, epigenetic modifications have been linked to the persistence and reversibility of primed immune states. However, these regulatory layers are often examined separately, limiting mechanistic understanding of how immune states are both stabilized and flexibly reprogrammed. In this conceptual review, we synthesize recent advances to examine <em>Trichoderma</em>-induced systemic immunity through an integrated RNA-epigenetic perspective. By viewing RNA-mediated regulation and epigenetic modification as components of a functional continuum, we illustrate how immune priorities defined by small RNAs can be consolidated into chromatin states that preserve inducibility without imposing constitutive costs. This framework provides a coherent explanation for how <em>Trichoderma</em>-induced immunity is organized across molecular layers in plants.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113030"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146143157","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-06DOI: 10.1016/j.plantsci.2026.113032
Tiantian Fei , Chunxiang Li , Na Wang , Wen’e Zhang , Xuejun Pan
J. sigillata produces abundant flavonols such as rutin and myricetin in pellicle, which provide various benefits to human health. However, the transcriptional regulation of flavonols biosynthesis in pellicle of J. sigillata remains unclear. Our study showed that the JsMYB170 is a transcriptional activator involved in the biosynthesis of flavonols in J. sigillata. In the pellicle of J. sigillata, the transient silencing of the JsMYB170 gene can significantly reduce its expression level, as well as the expression of JsFLS1/5 and the accumulation of flavonols such as rutin, myricetin, quercetin and kaempferol. In contrast, the transient over-expression of JsMYB170 can significantly increase the content of flavonols in the pellicle. Similarly, qRT-PCR detection in mature fruits of JsMYB170 over-expressing transgenic T3 generation tomato showed that, the expression levels of JsMYB170 and SlFLS also significantly increased. At the same time, HPLC analysis showed that the content of flavonols also significantly increased. Through DAP-seq, 25 downstream target genes of JsMYB170 were screened out. The dual luciferase assay conducted on tobacco leaves and the subsequent yeast one-hybrid assay both indicated that JsMYB170 can positively regulate the transcriptional expression of JsFLS1/5 by binding to the AC element of the promoter. As a key enzyme gene for flavonol synthesis, the same transient expression of JsFLS1/5 also showed that JsFLS1/5 could positively regulate the accumulation of flavonols in pellicle of walnut. These research results provide new insights into the molecular regulatory pathways of functional substance flavonols accumulation on walnut pellicle.
{"title":"JsMYB170 modulates flavonols biosynthesis through facilitation of JsFLS1/5 expression in pellicle of Juglans sigillata Dode","authors":"Tiantian Fei , Chunxiang Li , Na Wang , Wen’e Zhang , Xuejun Pan","doi":"10.1016/j.plantsci.2026.113032","DOIUrl":"10.1016/j.plantsci.2026.113032","url":null,"abstract":"<div><div><em>J. sigillata</em> produces abundant flavonols such as rutin and myricetin in pellicle, which provide various benefits to human health. However, the transcriptional regulation of flavonols biosynthesis in pellicle of <em>J. sigillata</em> remains unclear. Our study showed that the JsMYB170 is a transcriptional activator involved in the biosynthesis of flavonols in <em>J. sigillata</em>. In the pellicle of <em>J. sigillata</em>, the transient silencing of the <em>JsMYB170</em> gene can significantly reduce its expression level, as well as the expression of <em>JsFLS1/5</em> and the accumulation of flavonols such as rutin, myricetin, quercetin and kaempferol. In contrast, the transient over-expression of <em>JsMYB170</em> can significantly increase the content of flavonols in the pellicle. Similarly, qRT-PCR detection in mature fruits of <em>JsMYB170</em> over-expressing transgenic T<sub>3</sub> generation tomato showed that, the expression levels of <em>JsMYB170</em> and <em>SlFLS</em> also significantly increased. At the same time, HPLC analysis showed that the content of flavonols also significantly increased. Through DAP-seq, 25 downstream target genes of JsMYB170 were screened out. The dual luciferase assay conducted on tobacco leaves and the subsequent yeast one-hybrid assay both indicated that JsMYB170 can positively regulate the transcriptional expression of <em>JsFLS1/5</em> by binding to the AC element of the promoter. As a key enzyme gene for flavonol synthesis, the same transient expression of <em>JsFLS1/5</em> also showed that <em>JsFLS1/5</em> could positively regulate the accumulation of flavonols in pellicle of walnut. These research results provide new insights into the molecular regulatory pathways of functional substance flavonols accumulation on walnut pellicle.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113032"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146143093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-02DOI: 10.1016/j.plantsci.2026.113017
Damián N. Jerez , Carina V. González , Perla C. Kozub , Verónica N. Ibañez , Federico Berli , Ricardo W. Masuelli , Carlos F. Marfil
Polyploidy, the possession of more than two sets of chromosomes in a cell, is often linked to enhanced adaptability and stress resilience in plants, though it may introduce genomic instability and fitness costs. Here, we examined the interplay between ploidy level and epigenetic responses to drought stress in Solanum kurtzianum, a drought-tolerant wild relative of potato. We subjected diploid and newly oryzalin-induced autotetraploid lines to three different watering regimes and assessed their morphological, physiological, biochemical, and epigenetic responses. Diploids consistently outperformed autotetraploids in drought tolerance and tuber yield under moderate water stress, exhibiting lower stomatal conductance, yet maintaining comparable photochemical efficiency. Epigenetic analyses revealed significant interplay between the ploidy level and drought conditions on methylation patterns, with autotetraploids displaying higher methylation variability and greater genomic instability under severe drought. These findings are consistent with the predominance of diploid wild potatoes in arid regions and suggest that genomic instability caused by polyploidy may compromise drought resilience. The study emphasizes the adaptive potential of diploid wild potatoes in arid environments and the role of epigenetic mechanisms in stress responses. Our results have implications for potato breeding strategies, highlighting the potential of diploids for developing drought-resilient cultivars to cope with climate change challenges.
{"title":"Polyploidization disrupts drought response and epigenetic patterns in the desert wild potato species Solanum kurtzianum","authors":"Damián N. Jerez , Carina V. González , Perla C. Kozub , Verónica N. Ibañez , Federico Berli , Ricardo W. Masuelli , Carlos F. Marfil","doi":"10.1016/j.plantsci.2026.113017","DOIUrl":"10.1016/j.plantsci.2026.113017","url":null,"abstract":"<div><div>Polyploidy, the possession of more than two sets of chromosomes in a cell, is often linked to enhanced adaptability and stress resilience in plants, though it may introduce genomic instability and fitness costs. Here, we examined the interplay between ploidy level and epigenetic responses to drought stress in <em>Solanum kurtzianum</em>, a drought-tolerant wild relative of potato. We subjected diploid and newly oryzalin-induced autotetraploid lines to three different watering regimes and assessed their morphological, physiological, biochemical, and epigenetic responses. Diploids consistently outperformed autotetraploids in drought tolerance and tuber yield under moderate water stress, exhibiting lower stomatal conductance, yet maintaining comparable photochemical efficiency. Epigenetic analyses revealed significant interplay between the ploidy level and drought conditions on methylation patterns, with autotetraploids displaying higher methylation variability and greater genomic instability under severe drought. These findings are consistent with the predominance of diploid wild potatoes in arid regions and suggest that genomic instability caused by polyploidy may compromise drought resilience. The study emphasizes the adaptive potential of diploid wild potatoes in arid environments and the role of epigenetic mechanisms in stress responses. Our results have implications for potato breeding strategies, highlighting the potential of diploids for developing drought-resilient cultivars to cope with climate change challenges.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113017"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146119616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-03DOI: 10.1016/j.plantsci.2026.113019
Xingyue Hong , Hanchen Tang , Hezi Huang , Mingyue Wei , Mengqi Wu , Zhaoyu Guo , Jiakun Liu , Lihan Zhuang , Ling Sun , Jicheng Wang , Hanxin Zheng , Hai-Lei Zheng
Avicennia marina, a pioneer mangrove species, has adapted to the intertidal habitat along the tropical and subtropical coasts by developing salt glands on its leaf epidermis. Jasmonic acid (JA) is known to regulate the development of various plant epidermis. However, its role in the development of salt glands in A. marina remains unclear. In this study, we treated A. marina seedling using exogenous methyl jasmonate (MeJA) to investigate the effect of JA on the development and cell fate determination of salt glands, stomata and trichomes in A. marina leaf. The results showed MeJA significantly increased both the density of salt glands and the Na⁺ secretion. Besides, MeJA treatment positively regulated the trichome initiation and negatively affected stomatal lineage ground cells, with a significant decrease in stomatal density but no significant change in trichome density, while it exhibited that salt gland cells may partially originate from trichomes or stomatal lineage cells. Moreover, qRT-PCR results indicated that MeJA affects salt gland development via influencing the process of cell cycle, like reducing endoreduplication. These findings clarify how salt glands contribute to A. marina adaptation to coastal intertidal habitat from a tissue development perspective.
{"title":"Jasmonic acid affects epidermal cell fate determination via influencing cell cycle related gene expression in mangrove Avicennia marina","authors":"Xingyue Hong , Hanchen Tang , Hezi Huang , Mingyue Wei , Mengqi Wu , Zhaoyu Guo , Jiakun Liu , Lihan Zhuang , Ling Sun , Jicheng Wang , Hanxin Zheng , Hai-Lei Zheng","doi":"10.1016/j.plantsci.2026.113019","DOIUrl":"10.1016/j.plantsci.2026.113019","url":null,"abstract":"<div><div><em>Avicennia marina</em>, a pioneer mangrove species, has adapted to the intertidal habitat along the tropical and subtropical coasts by developing salt glands on its leaf epidermis. Jasmonic acid (JA) is known to regulate the development of various plant epidermis. However, its role in the development of salt glands in <em>A. marina</em> remains unclear. In this study, we treated <em>A. marina</em> seedling using exogenous methyl jasmonate (MeJA) to investigate the effect of JA on the development and cell fate determination of salt glands, stomata and trichomes in <em>A. marina</em> leaf. The results showed MeJA significantly increased both the density of salt glands and the Na⁺ secretion. Besides, MeJA treatment positively regulated the trichome initiation and negatively affected stomatal lineage ground cells, with a significant decrease in stomatal density but no significant change in trichome density, while it exhibited that salt gland cells may partially originate from trichomes or stomatal lineage cells. Moreover, qRT-PCR results indicated that MeJA affects salt gland development via influencing the process of cell cycle, like reducing endoreduplication. These findings clarify how salt glands contribute to <em>A. marina</em> adaptation to coastal intertidal habitat from a tissue development perspective.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113019"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146126369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-06DOI: 10.1016/j.plantsci.2026.113029
Bing Dai , Pedro García-Caparros , Fasih Ullah Haider , Yan Liu , Jingying Wang , Xiaoyi Tan , Peng Zhang , Xiangnan Li
Low temperature during the reproductive stage, particularly late-spring cold events, severely threatens wheat (Triticum aestivum L.) yield. This study explored how exogenous glucose promotes the source-flow-sink balance under low temperature by assessing its effects on sucrose metabolism, carbohydrate partitioning, vascular development, and yield components in wild-type (WT) and chlorophyll b-deficient mutant (ANK 32B) plants. Low temperature inhibited the activities of sucrose metabolism enzymes (soluble acid invertase, neutral invertase, sucrose phosphate synthase, and sucrose synthase) in spikes, while inducing abnormal activation in leaves and uppermost internodes. This disturbance caused carbohydrate retention in non-spike organs and severe depletion in spikes, markedly reducing starch, glucose, fructose, and sucrose in the basal and apical spikelets. Consequently, spike development was impaired, grain number and weight decreased, and main-stem yield declined by 60.66 %, 31.05 %, and 52.63 % in the basal, central, and apical spikelets. Micro-CT analysis revealed that cold stress also restricted rachis vascular bundle formation, particularly the bundles delivering assimilates to basal spikelets. The assimilate-limited ANK 32B mutant exhibited compounded sensitivity to low temperature. Exogenous glucose provided sufficient assimilates, stabilized the “source” by mitigating the sucrose metabolism enzyme disturbance, ensured the “flow” by maintaining vascular development, and strengthened the “sink” by increasing carbohydrate accumulation and dry matter in spikes. This coordinated regulation ultimately optimized source-flow-sink system, alleviating cold-induced yield loss by 4.54 %, 0.32 %, and 6.75 % in the basal, central, and apical spikelets, respectively.
{"title":"Glucose mitigates spatial heterogeneous cold damage in wheat via enhanced carbohydrate allocation to spike","authors":"Bing Dai , Pedro García-Caparros , Fasih Ullah Haider , Yan Liu , Jingying Wang , Xiaoyi Tan , Peng Zhang , Xiangnan Li","doi":"10.1016/j.plantsci.2026.113029","DOIUrl":"10.1016/j.plantsci.2026.113029","url":null,"abstract":"<div><div>Low temperature during the reproductive stage, particularly late-spring cold events, severely threatens wheat (<em>Triticum aestivum</em> L.) yield. This study explored how exogenous glucose promotes the source-flow-sink balance under low temperature by assessing its effects on sucrose metabolism, carbohydrate partitioning, vascular development, and yield components in wild-type (WT) and chlorophyll b-deficient mutant (<em>ANK 32B</em>) plants. Low temperature inhibited the activities of sucrose metabolism enzymes (soluble acid invertase, neutral invertase, sucrose phosphate synthase, and sucrose synthase) in spikes, while inducing abnormal activation in leaves and uppermost internodes. This disturbance caused carbohydrate retention in non-spike organs and severe depletion in spikes, markedly reducing starch, glucose, fructose, and sucrose in the basal and apical spikelets. Consequently, spike development was impaired, grain number and weight decreased, and main-stem yield declined by 60.66 %, 31.05 %, and 52.63 % in the basal, central, and apical spikelets. Micro-CT analysis revealed that cold stress also restricted rachis vascular bundle formation, particularly the bundles delivering assimilates to basal spikelets. The assimilate-limited <em>ANK 32B</em> mutant exhibited compounded sensitivity to low temperature. Exogenous glucose provided sufficient assimilates, stabilized the “source” by mitigating the sucrose metabolism enzyme disturbance, ensured the “flow” by maintaining vascular development, and strengthened the “sink” by increasing carbohydrate accumulation and dry matter in spikes. This coordinated regulation ultimately optimized source-flow-sink system, alleviating cold-induced yield loss by 4.54 %, 0.32 %, and 6.75 % in the basal, central, and apical spikelets, respectively.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113029"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146143127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}