Fusarium wilt, caused by soil-borne Fusarium oxysporum f. sp. cubense (Foc), can damage banana crops globally. Herein, we first examined the different responses between a susceptible (‘Baxijiao’, BX) and resistant (‘Yueyoukang1’, YK) cultivar to Foc 4 via RNA-Seq and immunofluorescence labeling technique. The KEGG analysis highlighted the abundance of plant-pathogen interaction, plant hormone signal transduction, and MAPK signaling pathways-plant. We found that, following Foc 4 infection, GO items relevant to the cell wall were enriched in abundance. Most differentially expressed AGPs were downregulated in YK than in BX before and/or after pathogen infection. Interestingly, MaAGP15 was downregulated in the YK before and after the pathogen infection. The BX plants exhibited higher epitope levels of AGPs recognized by JIM16, LM2, and JIM8 antibodies than YK before or after pathogen infection. Functional characterization of the MaAGP15 protein revealed that it was localized to the cell membrane. The MaAGP15 promoter contains hormone and transcription factor-responsive cis-elements (E-boxes, W-boxes), and its GO terms are associated with cell wall integrity and secondary cell wall. Overexpression of MaAGP15 increased Arabidopsis susceptibility to Fo5176 and led to elevated levels of AGPs recognized by the JIM8 and LM2 antibodies. Our study identified MaAGP15 as a negative regulator of the banana immune system against Foc 4 stress.
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