Pub Date : 2026-04-01Epub Date: 2026-02-05DOI: 10.1016/j.plantsci.2026.113031
Wenfeng Huang , Yujian Mo , Xiaolin Liang , Shusong He , Xingyu Jiang , Yu Ling
FLOWERING LOCUS C (FLC) is a MADS-box transcription factor that integrates diverse internal and environmental signals to precisely regulate the growth and development of plants. While historically characterized as a key repressor of flowering in the vernalization, autonomous, and temperature pathways, recent research has revealed that FLC's functions extend far beyond flowering control. This review synthesizes current understanding of FLC's pleiotropic roles in various developmental processes, from seed germination, juvenile-to-adult phase transition and biomass determination, to the establishment of annual/perennial habits. Furthermore, it explores emerging links between FLC and broader environmental adaptation, including plant responses to drought stress, nitrogen availability, and pathogen tolerance, where its role may be both direct and indirect. The molecular mechanisms underlying FLC's expression are explored, encompassing complex multi-layered regulation at transcriptional, post-transcriptional, including alternative splicing (AS) and m⁶A RNA methylation, and epigenetic levels (notably PRC2-mediated H3K27me3 deposition). The discussion also covers how natural sequence variation and transposable elements in the FLC locus contribute to adaptive evolution. By contextualizing recent findings, this review aims not only to summarize FLC's functions as a developmental-stress integrator but also to critically evaluate the strength of evidence, identify persistent knowledge gaps, and propose key questions for future research to move from descriptive association to mechanistic understanding.
开花基因座C (FLC)是一个MADS-box转录因子,整合多种内部和环境信号,精确调控植物的生长发育。虽然历史上被认为是春化、自主和温度通路中开花的关键抑制因子,但最近的研究表明,FLC的功能远远超出了开花控制。本文综述了FLC在各种发育过程中的多效性作用,从种子萌发、幼虫到成虫的相变和生物量的确定,到一年生/多年生习性的建立。此外,它还探讨了FLC与更广泛的环境适应之间的新联系,包括植物对干旱胁迫的反应,氮有效性和病原体耐受性,其中FLC的作用可能是直接和间接的。探究了FLC表达的分子机制,包括转录、转录后的复杂多层调控,包括选择性剪接(AS)和m 26 A RNA甲基化,以及表观遗传水平(特别是prc2介导的H3K27me3沉积)。讨论还涵盖了FLC基因座的自然序列变异和转座因子如何促进适应性进化。通过对最近研究结果的背景分析,本综述不仅旨在总结FLC作为发育应激整合器的功能,而且旨在批判性地评估证据的强度,确定持续的知识空白,并为未来的研究从描述性关联转向机制理解提出关键问题。
{"title":"Multiple-layered fine-tuning of flowering locus C --- Flowering control and beyond","authors":"Wenfeng Huang , Yujian Mo , Xiaolin Liang , Shusong He , Xingyu Jiang , Yu Ling","doi":"10.1016/j.plantsci.2026.113031","DOIUrl":"10.1016/j.plantsci.2026.113031","url":null,"abstract":"<div><div>FLOWERING LOCUS C (FLC) is a MADS-box transcription factor that integrates diverse internal and environmental signals to precisely regulate the growth and development of plants. While historically characterized as a key repressor of flowering in the vernalization, autonomous, and temperature pathways, recent research has revealed that FLC's functions extend far beyond flowering control. This review synthesizes current understanding of FLC's pleiotropic roles in various developmental processes, from seed germination, juvenile-to-adult phase transition and biomass determination, to the establishment of annual/perennial habits. Furthermore, it explores emerging links between FLC and broader environmental adaptation, including plant responses to drought stress, nitrogen availability, and pathogen tolerance, where its role may be both direct and indirect. The molecular mechanisms underlying FLC's expression are explored, encompassing complex multi-layered regulation at transcriptional, post-transcriptional, including alternative splicing (AS) and m⁶A RNA methylation, and epigenetic levels (notably PRC2-mediated H3K27me3 deposition). The discussion also covers how natural sequence variation and transposable elements in the FLC locus contribute to adaptive evolution. By contextualizing recent findings, this review aims not only to summarize FLC's functions as a developmental-stress integrator but also to critically evaluate the strength of evidence, identify persistent knowledge gaps, and propose key questions for future research to move from descriptive association to mechanistic understanding.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113031"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-01-30DOI: 10.1016/j.plantsci.2026.113009
Han Lin , Kaili Mao , Shilong Chai, Jiangmin Lan, Hongbo Xiao, Zhixiong Guo, Tengfei Pan, Wenqin She
‘Shine Muscat’ (YG), ‘Gaoqiansui’ (GQS), and ‘Moldova’ (ME) are three grape cultivars with distinct phenotypic differences in fruits, serving as ideal materials for deciphering the mechanism of grape color differentiation. Currently, the specific mechanisms underlying the regulation of anthocyanin synthesis and color differentiation during grape fruit development require further investigation. To understand these, transcriptomic analysis was performed in this study to compare the different developmental stages of the three grape cultivars. Transcriptomic analysis displayed significant enrichment of differentially expressed genes (DEGs) in the phenylpropanoid and flavonoid biosynthesis pathways. These pathway-related genes exhibited a significant upregulation in expression during the veraison and maturation stages in the GQS and ME groups, with the most prominent upregulation observed in the ME group. Meanwhile, WGCNA and correlation network heatmap were employed to construct a TF-structural gene regulatory network associated with grape anthocyanin synthesis. VvMYB90 may mediate the regulation of gene-UFGT, whereas VvNAC92 may engage in the regulation of seven structural genes (gene-CHS, gene-GST4, gene-LOC100250360, gene-LOC100250579, gene-LOC100255217, gene-LOC100261962, and gene-UFGT). Collectively, these findings reveal the molecular basis of anthocyanin biosynthesis and color differentiation in grape fruits, providing meaningful insights into the accurate regulation of grape peel color.
{"title":"Transcriptomic analysis identifies VvMYB90 and VvNAC92 as key regulators mediating anthocyanin biosynthesis and fruit color differentiation in three grape cultivars","authors":"Han Lin , Kaili Mao , Shilong Chai, Jiangmin Lan, Hongbo Xiao, Zhixiong Guo, Tengfei Pan, Wenqin She","doi":"10.1016/j.plantsci.2026.113009","DOIUrl":"10.1016/j.plantsci.2026.113009","url":null,"abstract":"<div><div>‘Shine Muscat’ (YG), ‘Gaoqiansui’ (GQS), and ‘Moldova’ (ME) are three grape cultivars with distinct phenotypic differences in fruits, serving as ideal materials for deciphering the mechanism of grape color differentiation. Currently, the specific mechanisms underlying the regulation of anthocyanin synthesis and color differentiation during grape fruit development require further investigation. To understand these, transcriptomic analysis was performed in this study to compare the different developmental stages of the three grape cultivars. Transcriptomic analysis displayed significant enrichment of differentially expressed genes (DEGs) in the phenylpropanoid and flavonoid biosynthesis pathways. These pathway-related genes exhibited a significant upregulation in expression during the veraison and maturation stages in the GQS and ME groups, with the most prominent upregulation observed in the ME group. Meanwhile, WGCNA and correlation network heatmap were employed to construct a TF-structural gene regulatory network associated with grape anthocyanin synthesis. VvMYB90 may mediate the regulation of gene-UFGT, whereas VvNAC92 may engage in the regulation of seven structural genes (gene-CHS, gene-GST4, gene-LOC100250360, gene-LOC100250579, gene-LOC100255217, gene-LOC100261962, and gene-UFGT). Collectively, these findings reveal the molecular basis of anthocyanin biosynthesis and color differentiation in grape fruits, providing meaningful insights into the accurate regulation of grape peel color.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113009"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146100402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-04DOI: 10.1016/j.plantsci.2026.113023
Ying Qu, Yunxuan Feng, Pengguo Xia
C2H2-type zinc finger proteins, as a class of key transcription factors in plants, play a important regulatory role in plant response to a wide range of abiotic stresses, including salt stress, drought, temperature stress, osmotic stress, high light stress and oxidative stress. This paper presents a systematic review of the structural characterization and classification system of C2H2-type zinc finger proteins and their molecular mechanisms involved in abiotic stress response. Research indicates that C2H2-type zinc finger proteins enhance plant stress resistance indirectly by regulating ion homeostasis, promoting the synthesis of osmoregulatory substances, activating reactive oxygen species scavenging systems, and participating in both ABA-dependent and ABA-independent signaling pathways. In addition, these proteins can indirectly enhance plant adaptation to stressful environments by regulating physiological processes such as stomatal movement and photosynthetic efficiency. This study provides new theoretical basis and strategic ideas for addressing the challenges of global climate change and ensuring food security.
{"title":"C2H2-type zinc finger proteins: Contributing regulators of plant tolerance to abiotic stress","authors":"Ying Qu, Yunxuan Feng, Pengguo Xia","doi":"10.1016/j.plantsci.2026.113023","DOIUrl":"10.1016/j.plantsci.2026.113023","url":null,"abstract":"<div><div><em>C2H2</em>-type zinc finger proteins, as a class of key transcription factors in plants, play a important regulatory role in plant response to a wide range of abiotic stresses, including salt stress, drought, temperature stress, osmotic stress, high light stress and oxidative stress. This paper presents a systematic review of the structural characterization and classification system of <em>C2H2-</em>type zinc finger proteins and their molecular mechanisms involved in abiotic stress response. Research indicates that <em>C2H2-</em>type zinc finger proteins enhance plant stress resistance indirectly by regulating ion homeostasis, promoting the synthesis of osmoregulatory substances, activating reactive oxygen species scavenging systems, and participating in both ABA-dependent and ABA-independent signaling pathways. In addition, these proteins can indirectly enhance plant adaptation to stressful environments by regulating physiological processes such as stomatal movement and photosynthetic efficiency. This study provides new theoretical basis and strategic ideas for addressing the challenges of global climate change and ensuring food security.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113023"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146132913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rapid, field-deployable diagnostics are essential for effective plant disease management. Although CRISPR-Cas systems offer high sensitivity and programmability, their use in on-site plant pathogen detection has been hindered by the lack of standardized, practical workflows. Here we present implementable CRISPR-Cas diagnostic protocols using Cas12a, Cas13a, and miniature Cas variants for rapid detection of major plant pathogens. Three field-ready assays are described: (i) an RPA-Cas12a lateral-flow test for DNA pathogens, (ii) a Cas13a RT-RPA assay for RNA viruses, and (iii) an amplification-free Cas12a electrochemical biosensor suited for portable laboratories. Each protocol includes sample preparation steps, reagent formulations, incubation conditions, and troubleshooting guidance. Across platforms, detection limits of 1–100 copies µL⁻¹ were achieved within 20–45 min, demonstrating analytical sensitivity comparable to conventional PCR-based diagnostics while offering substantially reduced assay time and improved field deployability. We also address practical constraints including sample inhibitors, reagent stability, and biosafety and propose solutions for field implementation. These standardized workflows translate recent advances in CRISPR diagnostics into reproducible, field-deployable tools for plant health surveillance and rapid disease detection.
{"title":"Field-deployable CRISPR-cas variants for rapid on-site detection of plant pathogens","authors":"Himanshu Saini , Jyoti Yadav , Sharad Pandey , Anand Kumar , Deepak Nanda , Sharad Sachan , Jeevan Jyoti Kaushik","doi":"10.1016/j.plantsci.2026.113028","DOIUrl":"10.1016/j.plantsci.2026.113028","url":null,"abstract":"<div><div>Rapid, field-deployable diagnostics are essential for effective plant disease management. Although CRISPR-Cas systems offer high sensitivity and programmability, their use in on-site plant pathogen detection has been hindered by the lack of standardized, practical workflows. Here we present implementable CRISPR-Cas diagnostic protocols using Cas12a, Cas13a, and miniature Cas variants for rapid detection of major plant pathogens. Three field-ready assays are described: (i) an RPA-Cas12a lateral-flow test for DNA pathogens, (ii) a Cas13a RT-RPA assay for RNA viruses, and (iii) an amplification-free Cas12a electrochemical biosensor suited for portable laboratories. Each protocol includes sample preparation steps, reagent formulations, incubation conditions, and troubleshooting guidance. Across platforms, detection limits of 1–100 copies µL⁻¹ were achieved within 20–45 min, demonstrating analytical sensitivity comparable to conventional PCR-based diagnostics while offering substantially reduced assay time and improved field deployability. We also address practical constraints including sample inhibitors, reagent stability, and biosafety and propose solutions for field implementation. These standardized workflows translate recent advances in CRISPR diagnostics into reproducible, field-deployable tools for plant health surveillance and rapid disease detection.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113028"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146137837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-02-06DOI: 10.1016/j.plantsci.2026.113033
Lijuan Ai , Qiang Chen , Yuxin Liu , Cunyi Sun , Xiaolei Shi , Chunjiang Zhou , Sujuan Cui , Hongtao Zhao , Long Yan , Chunyan Yang
Plant height is a key agronomic trait in soybean that is closely associated with yield potential. Nevertheless, the molecular mechanisms underlying its regulation remain largely elusive. In this study, we employed a recombinant inbred line (RIL) population comprising 271 lines evaluated across six environments to dissect the genetic architecture of plant height. A total of eleven quantitative trait loci (QTLs) associated with plant height were identified, including four novel loci (qPH5–1, qPH6–1, qPH6–2, and qPH17–1). Among these, four stable major QTLs (qPH2–1, qPH10–1, qPH18–1, and qPH19–2) were consistently detected across multiple environments, each explaining more than 10 % of the phenotypic variance. Resequencing analysis of the parental lines suggested that E1, E2, Dt2, and E3 represent candidate genes underlying qPH6–3, qPH10–1, qPH18–1, and qPH19–2, respectively. Importantly, Glyma.02G057500 (GmDWF4.2), a soybean ortholog of Arabidopsis AtDWF4, was mapped within the qPH2–1 interval and exhibited exon polymorphisms between the two parental lines, Jidou17 and Suinong14. Functional assays demonstrated that both GmDWF4.2JD17 and GmDWF4.2SN14 partially rescued the dwarf phenotype of the Arabidopsis dwf4–102 mutant. Notably, heterologous overexpression of GmDWF4.2SN14 in wild-type Arabidopsis resulted in a significantly greater increase in plant height compared to that of GmDWF4.2JD17. Overall, our findings demonstrate that GmDWF4.2 functions as a positive regulator of plant height in soybean and further reveal that the GmDWF4.2SN14 haplotype confers a stronger promotive effect on this trait. These findings contribute to elucidating the genetic regulatory mechanisms of soybean plant height and provide a theoretical foundation for refining molecular marker-assisted selection strategies for this agronomic trait.
{"title":"Integrated QTL mapping and functional analysis reveal GmDWF4.2 as a key regulator of soybean plant height","authors":"Lijuan Ai , Qiang Chen , Yuxin Liu , Cunyi Sun , Xiaolei Shi , Chunjiang Zhou , Sujuan Cui , Hongtao Zhao , Long Yan , Chunyan Yang","doi":"10.1016/j.plantsci.2026.113033","DOIUrl":"10.1016/j.plantsci.2026.113033","url":null,"abstract":"<div><div>Plant height is a key agronomic trait in soybean that is closely associated with yield potential. Nevertheless, the molecular mechanisms underlying its regulation remain largely elusive. In this study, we employed a recombinant inbred line (RIL) population comprising 271 lines evaluated across six environments to dissect the genetic architecture of plant height. A total of eleven quantitative trait loci (QTLs) associated with plant height were identified, including four novel loci (<em>qPH5–1</em>, <em>qPH6–1</em>, <em>qPH6–2</em>, and <em>qPH17–1</em>). Among these, four stable major QTLs (<em>qPH2–1</em>, <em>qPH10–1</em>, <em>qPH18–1</em>, and <em>qPH19–2</em>) were consistently detected across multiple environments, each explaining more than 10 % of the phenotypic variance. Resequencing analysis of the parental lines suggested that <em>E1</em>, <em>E2</em>, <em>Dt2</em>, and <em>E3</em> represent candidate genes underlying <em>qPH6–3</em>, <em>qPH10–1</em>, <em>qPH18–1</em>, and <em>qPH19–2</em>, respectively. Importantly, <em>Glyma.02G057500</em> (<em>GmDWF4.2</em>), a soybean ortholog of Arabidopsis <em>AtDWF4</em>, was mapped within the <em>qPH2–1</em> interval and exhibited exon polymorphisms between the two parental lines, Jidou17 and Suinong14. Functional assays demonstrated that both <em>GmDWF4.2</em><sub><em>JD17</em></sub> and <em>GmDWF4.2</em><sub><em>SN14</em></sub> partially rescued the dwarf phenotype of the Arabidopsis <em>dwf4–102</em> mutant. Notably, heterologous overexpression of <em>GmDWF4.2</em><sub><em>SN14</em></sub> in wild-type Arabidopsis resulted in a significantly greater increase in plant height compared to that of <em>GmDWF4.2</em><sub><em>JD17</em></sub>. Overall, our findings demonstrate that <em>GmDWF4.2</em> functions as a positive regulator of plant height in soybean and further reveal that the <em>GmDWF4.2</em><sub><em>SN14</em></sub> haplotype confers a stronger promotive effect on this trait. These findings contribute to elucidating the genetic regulatory mechanisms of soybean plant height and provide a theoretical foundation for refining molecular marker-assisted selection strategies for this agronomic trait.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113033"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146143077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-01-30DOI: 10.1016/j.plantsci.2026.113013
Venicius Urbano Vilela Reis , Everson Reis Carvalho , Imtiyaz Khanday
Seed treatment is a foundational technology in modern agriculture, designed to protect high-value seeds against initial pest and pathogen attacks, among other benefits, ensuring crop establishment. However, the application of complex chemical formulations, although protective, imposes stresses that can compromise seed quality if poorly performed. The objective of this review is to synthesize current knowledge on chemical seed treatment and critically analyze its impacts on the multiple attributes that define seed performance. The effects of seed treatment on physical quality are discussed, highlighting the risk of mechanical damage during processing, and on physiological quality, focusing on the mechanisms of phytotoxicity that can reduce vigor and germination, especially during storage, as well as all factors that can affect this relationship between treatment and physiological quality. Additionally, the emerging functional quality is addressed, analyzing how seed treatment affects plantability and environmental safety. A critical and often neglected balance exists between protective efficacy and seed integrity; therefore, studies for correct execution of seed treatment are essential for maintaining the physiological quality of seeds. Knowledge gaps, especially regarding the interaction between slurry mixture composition, storage, and initial lot quality, indicate the need for future research focused on safer formulations and optimized application technologies to maximize the benefits of seed treatment without compromising seed quality.
{"title":"Seed treatment technologies: Effects on physical, functional, and physiological seed quality","authors":"Venicius Urbano Vilela Reis , Everson Reis Carvalho , Imtiyaz Khanday","doi":"10.1016/j.plantsci.2026.113013","DOIUrl":"10.1016/j.plantsci.2026.113013","url":null,"abstract":"<div><div>Seed treatment is a foundational technology in modern agriculture, designed to protect high-value seeds against initial pest and pathogen attacks, among other benefits, ensuring crop establishment. However, the application of complex chemical formulations, although protective, imposes stresses that can compromise seed quality if poorly performed. The objective of this review is to synthesize current knowledge on chemical seed treatment and critically analyze its impacts on the multiple attributes that define seed performance. The effects of seed treatment on physical quality are discussed, highlighting the risk of mechanical damage during processing, and on physiological quality, focusing on the mechanisms of phytotoxicity that can reduce vigor and germination, especially during storage, as well as all factors that can affect this relationship between treatment and physiological quality. Additionally, the emerging functional quality is addressed, analyzing how seed treatment affects plantability and environmental safety. A critical and often neglected balance exists between protective efficacy and seed integrity; therefore, studies for correct execution of seed treatment are essential for maintaining the physiological quality of seeds. Knowledge gaps, especially regarding the interaction between slurry mixture composition, storage, and initial lot quality, indicate the need for future research focused on safer formulations and optimized application technologies to maximize the benefits of seed treatment without compromising seed quality.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113013"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146100440","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2026-01-30DOI: 10.1016/j.plantsci.2026.113014
Xiaoxia Shangguan , Hongru Liu , Hongli Li , Huanyang Zhang , Jing Li , Zhiwen Chen
The cuticular layer in plants acts as a vital barrier against drought stress, with BAHD acyltransferase family members playing a key role in cuticle development. This study identified GhACY (GH_A11G0105), a BAHD family gene in cotton, located at the distal end of chromosome A11. Phylogenetic analysis placed GhACY in the second clade of subfamily Ⅰ, closely related to the DCR (defective in cuticular ridges; At5g23940) gene from Arabidopsis. Overexpression (OE) of GhACY in transgenic cotton enhanced drought tolerance and increased cotton yields compared to control lines. Conversely, RNA interference (RNAi)-mediated downregulation of GhACY compromised drought tolerance, with GhACY-RNAi transgenic lines exhibiting significantly reduced yield relative to wild-type plants. Chemical composition analysis revealed significant alteration in cutin and wax biosynthesis and deposition in transgenic cotton. In GhACY-RNAi plants, the content of wax and cutin monomer decreased by more than 35 %, with the predominant cutin compound, 18-hydroxy-9-octadecenoic acid (C18:9-ωHFA), reduced by 60 %. Specific wax compounds, including alkanes (especially nonacosane (C29), long-chain fatty acids, and hydroxylated fatty acids, were notably affected. In contrast, GhACY-OE plants exhibited a 35.4 % increase in total cutin monomer content. The levels of C18 monomers, particularly 18-hydroxy-9-octadecenoic acid (C18:9-ωHFA) and 10,18-trihydroxy-octadecanoic acid (C18:9,10,18-HFA), were significantly elevated compared to wild-type plants. These modifications reduced the permeability of the cotton leaf cuticle, thereby enhancing drought resistance and increasing cotton yield.
{"title":"A BAHD acyltransferase of cotton affects plant drought tolerance and yield by regulating cuticle formation and cuticle permeability","authors":"Xiaoxia Shangguan , Hongru Liu , Hongli Li , Huanyang Zhang , Jing Li , Zhiwen Chen","doi":"10.1016/j.plantsci.2026.113014","DOIUrl":"10.1016/j.plantsci.2026.113014","url":null,"abstract":"<div><div>The cuticular layer in plants acts as a vital barrier against drought stress, with BAHD acyltransferase family members playing a key role in cuticle development. This study identified <em>GhACY</em> (<em>GH_A11G0105</em>), a BAHD family gene in cotton, located at the distal end of chromosome A11. Phylogenetic analysis placed GhACY in the second clade of subfamily Ⅰ, closely related to the DCR (defective in cuticular ridges; <em>At5g23940</em>) gene from <em>Arabidopsis.</em> Overexpression (OE) of <em>GhACY</em> in transgenic cotton enhanced drought tolerance and increased cotton yields compared to control lines. Conversely, RNA interference (RNAi)-mediated downregulation of <em>GhACY</em> compromised drought tolerance, with <em>GhACY-RNAi</em> transgenic lines exhibiting significantly reduced yield relative to wild-type plants. Chemical composition analysis revealed significant alteration in cutin and wax biosynthesis and deposition in transgenic cotton. In <em>GhACY-RNAi</em> plants, the content of wax and cutin monomer decreased by more than 35 %, with the predominant cutin compound, 18-hydroxy-9-octadecenoic acid (C18:9-ωHFA), reduced by 60 %. Specific wax compounds, including alkanes (especially nonacosane (C29), long-chain fatty acids, and hydroxylated fatty acids, were notably affected. In contrast, <em>GhACY-OE</em> plants exhibited a 35.4 % increase in total cutin monomer content. The levels of C18 monomers, particularly 18-hydroxy-9-octadecenoic acid (C18:9-ωHFA) and 10,18-trihydroxy-octadecanoic acid (C18:9,10,18-HFA), were significantly elevated compared to wild-type plants. These modifications reduced the permeability of the cotton leaf cuticle, thereby enhancing drought resistance and increasing cotton yield.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113014"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146100505","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-04-01Epub Date: 2025-11-27DOI: 10.1016/j.plantsci.2025.112906
Agata Leszczuk, Nataliia Kutyrieva-Nowak
The objective of our research was to define the precise structural response in wheat seedlings correlated with the duration of drought stress. For this purpose, we selected structural components of the cell recognised by specific molecular probes, which are molecules involved in rapid spatial cellular rearrangements: hydroxyproline-rich glycoproteins, arabinoxylan, and pectic compounds. Using basic molecular techniques, we marked the transformations occurring within the cell and elucidated the mechanism triggered by growth in the water absence. Our general observations are as follows: 1) remodelling of the cell architecture after just 5 days of drought conditions; 2) tissue-specific responses for drought resistance; 3) drought triggers the aggregation or cross-linking of molecules (appearance of larger molecular mass fractions) and causes degradation or breakdown of components (appearance of low molecular masses); 4) changes in the elemental economy due to modifications in cellular assembly. Our finding of the deposition of un- and esterified homogalacturonans and arabinogalactan proteins indicates reconstruction of the cell as a means of preventing drought effects. A stress-induced higher level of unesterified HGs permits calcium cross-linking, which enhances rigidity and helps in intracellular water preservation. Additionally, the effect is intensified by root structural disorders related to the uptake and subsequent elements transport, whose levels also undergo disruption during drought.
{"title":"Dynamic structural changes in wheat seedlings as a response to drought stress","authors":"Agata Leszczuk, Nataliia Kutyrieva-Nowak","doi":"10.1016/j.plantsci.2025.112906","DOIUrl":"10.1016/j.plantsci.2025.112906","url":null,"abstract":"<div><div>The objective of our research was to define the precise structural response in wheat seedlings correlated with the duration of drought stress. For this purpose, we selected structural components of the cell recognised by specific molecular probes, which are molecules involved in rapid spatial cellular rearrangements: hydroxyproline-rich glycoproteins, arabinoxylan, and pectic compounds. Using basic molecular techniques, we marked the transformations occurring within the cell and elucidated the mechanism triggered by growth in the water absence. Our general observations are as follows: 1) remodelling of the cell architecture after just 5 days of drought conditions; 2) tissue-specific responses for drought resistance; 3) drought triggers the aggregation or cross-linking of molecules (appearance of larger molecular mass fractions) and causes degradation or breakdown of components (appearance of low molecular masses); 4) changes in the elemental economy due to modifications in cellular assembly. Our finding of the deposition of un- and esterified homogalacturonans and arabinogalactan proteins indicates reconstruction of the cell as a means of preventing drought effects. A stress-induced higher level of unesterified HGs permits calcium cross-linking, which enhances rigidity and helps in intracellular water preservation. Additionally, the effect is intensified by root structural disorders related to the uptake and subsequent elements transport, whose levels also undergo disruption during drought.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 112906"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145622988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Wheat thermo-sensitive male sterility with Aegilops kotschyi cytoplasm (K-TCMS) is a promising system for hybrid breeding, yet the molecular mechanisms governing fertility conversion remain elusive. In the K-TCMS line KTM3315A, we identified a gene pair: TaHGSNAT (encoding a heparin-α-glucosaminide N-acetyltransferase) and its antisense long non-coding RNA, TaHTMAR. These two transcripts synchronized co-expression patterns during pollen development. Distinct subcellular localizations (membrane for TaHGSNAT, cytoplasm for TaHTMAR) were also observed. Virus-induced gene silencing (VIGS) demonstrated that both TaHGSNAT and TaHTMAR are essential for normal pollen development and anther dehiscence. Mechanistic studies using dual-luciferase reporter assays and GUS staining revealed that TaHTMAR functionally upregulates TaHGSNAT expression, suggesting a bidirectional positive feedback loop. Collectively, our findings define a TaHTMAR-TaHGSNAT regulatory module and provide new molecular insights into the genetic control of thermo-sensitive male fertility in wheat.
{"title":"A positive feedback loop between the lncRNA TaHTMAR and TaHGSNAT is essential for thermo-sensitive male fertility in wheat","authors":"Xiaoran Gao, Qiang Geng, Xin Che, Fuqiang Niu, Jinke Liu, Lingling Hu, Xiaoxia Wang, Xiyue Song, Lingli Zhang","doi":"10.1016/j.plantsci.2026.113022","DOIUrl":"10.1016/j.plantsci.2026.113022","url":null,"abstract":"<div><div>Wheat thermo-sensitive male sterility with <em>Aegilops kotschyi</em> cytoplasm (K-TCMS) is a promising system for hybrid breeding, yet the molecular mechanisms governing fertility conversion remain elusive. In the K-TCMS line KTM3315A, we identified a gene pair: <em>TaHGSNAT</em> (encoding a heparin-α-glucosaminide N-acetyltransferase) and its antisense long non-coding RNA, TaHTMAR. These two transcripts synchronized co-expression patterns during pollen development. Distinct subcellular localizations (membrane for <em>TaHGSNAT</em>, cytoplasm for TaHTMAR) were also observed. Virus-induced gene silencing (VIGS) demonstrated that both <em>TaHGSNAT</em> and TaHTMAR are essential for normal pollen development and anther dehiscence. Mechanistic studies using dual-luciferase reporter assays and GUS staining revealed that TaHTMAR functionally upregulates <em>TaHGSNAT</em> expression, suggesting a bidirectional positive feedback loop. Collectively, our findings define a TaHTMAR-<em>TaHGSNAT</em> regulatory module and provide new molecular insights into the genetic control of thermo-sensitive male fertility in wheat.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113022"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146132990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Drought is one of the major limiting factors affecting forest growth and survival. Basic leucine zipper (bZIP) transcription factors (TFs) play essential roles in plant responses to drought stress. Here, we identified that BpbZIP61, a drought-induced bZIP TF in birch (Betula platyphylla), functions as a potential negative regulator of drought tolerance. Overexpression of BpbZIP61 resulted in increased leaf water loss, elevated levels of reactive oxygen species (H₂O₂) and malondialdehyde (MDA), and decreased activities of Superoxide Dismutase (SOD) and Peroxidase (POD) activities. The overexpressing lines exhibited a significant reduction in ascorbic acid (AsA) content, a finding supported by transcriptomic evidence of downregulated expression in the ascorbate metabolism. We further demonstrated that BpbZIP61 functions as a transcriptional repressor by directly binding to ABRE cis-element in the promoter of BpGGLO6, a key gene in the AsA biosynthesis pathway, thereby suppressing its expression. The findings suggest that BpbZIP61 is a potential negative regulator for drought tolerance in birch, which operates by inhibiting AsA biosynthesis and regulating antioxidant enzyme activities, offering crucial insights for molecular breeding of drought-resistant trees.
{"title":"BpbZIP61 negatively regulates drought resistance in birch by reducing ascorbic acid content","authors":"Wenfang Dong, Jiaojiao Wang, Xinyu Wang, Wenshuo Gao, Zhongyuan Liu, Caiqiu Gao","doi":"10.1016/j.plantsci.2026.113015","DOIUrl":"10.1016/j.plantsci.2026.113015","url":null,"abstract":"<div><div>Drought is one of the major limiting factors affecting forest growth and survival. Basic leucine zipper (bZIP) transcription factors (TFs) play essential roles in plant responses to drought stress. Here, we identified that BpbZIP61, a drought-induced bZIP TF in birch (<em>Betula platyphylla</em>), functions as a potential negative regulator of drought tolerance. Overexpression of <em>BpbZIP61</em> resulted in increased leaf water loss, elevated levels of reactive oxygen species (H₂O₂) and malondialdehyde (MDA), and decreased activities of Superoxide Dismutase (SOD) and Peroxidase (POD) activities. The overexpressing lines exhibited a significant reduction in ascorbic acid (AsA) content, a finding supported by transcriptomic evidence of downregulated expression in the ascorbate metabolism. We further demonstrated that BpbZIP61 functions as a transcriptional repressor by directly binding to ABRE cis-element in the promoter of <em>BpGGLO6</em>, a key gene in the AsA biosynthesis pathway, thereby suppressing its expression. The findings suggest that BpbZIP61 is a potential negative regulator for drought tolerance in birch, which operates by inhibiting AsA biosynthesis and regulating antioxidant enzyme activities, offering crucial insights for molecular breeding of drought-resistant trees.</div></div>","PeriodicalId":20273,"journal":{"name":"Plant Science","volume":"365 ","pages":"Article 113015"},"PeriodicalIF":4.1,"publicationDate":"2026-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146099908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}