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Jasmonic acid mediates Ca2+ dependent signal transduction and plant immunity 茉莉酸介导 Ca2+ 依赖性信号转导和植物免疫力
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-26 DOI: 10.1016/j.plantsci.2024.112239
Muhammad Ahsan Farooq , Ahsan Ayyaz , Hui-Xi Zou , Weijun Zhou , Fakhir Hannan , Xiufeng Yan

Pathogen attacks can cause significant damage to plants, posing a threaten to global food production. Plants have developed exquisite methods to rapidly store a key defensive hormone jasmonate (JA), which stimulates their entire evolutionary adaptive response to pathogen attack. However, understanding how plants initiate JA biosynthesis in response to pathogen attacks has remained elusive. In this review, we discuss the newly discovered JAV1-JAZ8-WRKY51 (JJW) complex, which plays a crucial role in regulating JA production to deter insect attacks. The JJW complex inhibits JA production in plants, maintaining a low baseline level of JA that promotes optimal plant development. However, when plants are attacked by insects, a rapid influx of calcium stimulates the JAV1 calcium-dependent protein phosphate, leading to the breakdown of the JJW complex and the activation of JA production. This surge in JA levels, initiates plant defense mechanisms against the invading insects. These findings shed light on the intricate defense system that plants have evolved to combat diseases.

病原体的侵袭会对植物造成重大损害,对全球粮食生产构成威胁。植物已开发出精湛的方法来快速储存一种关键的防御性激素茉莉酸盐(JA),这种激素能刺激植物对病原体侵袭的整个进化适应反应。然而,人们对植物如何启动 JA 生物合成以应对病原体侵袭的问题仍然一无所知。在这篇综述中,我们将讨论新发现的 JAV1-JAZ8-WRKY51 (JJW)复合体,它在调节 JA 生成以阻止昆虫攻击方面发挥着至关重要的作用。JJW 复合物抑制植物的 JA 生产,维持较低的 JA 基线水平,促进植物的最佳发育。然而,当植物受到昆虫攻击时,快速涌入的钙会刺激 JAV1 依赖钙的蛋白磷酸,导致 JJW 复合物分解并激活 JA 的产生。JA 水平的激增启动了植物抵御昆虫入侵的防御机制。这些发现揭示了植物为对抗疾病而进化出的复杂防御系统。
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引用次数: 0
Characterization and functions of Myeloblastosis (MYB) transcription factors in cucurbit crops 葫芦科作物中髓母细胞病(MYB)转录因子的特征和功能。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-24 DOI: 10.1016/j.plantsci.2024.112235
Mingming Sun , Xuemei Xiao , Khuram Shehzad Khan , Jian Lyu , Jihua Yu

Myeloblastosis (MYB) is one of the largest family of transcription factors (TFs) in plants. It plays a key role in plant life activities, such as metabolic regulation, stress resistant, as well as helpful for plant growth and development. In China, cucurbit is an important and nutrients rich vegetable crop, which have high medicinal and socio-economic values. In this review, we discussed the structure and characterization of MYB TFs and how do regulate flower development, fruit maturity, fruit quality, and flavonoid biosynthesis. Furthermore, we highlight the effect and contribution of MYB TFs in the regulation of biotic and abiotic stress resistance. This comprehensive review will provide a new reference for the more effective application of MYB TF in quality control, stress resistance research and molecular breeding of cucurbit crops.

髓母细胞瘤(MYB)是植物中最大的转录因子家族之一。它在植物的代谢调节、抗逆等生命活动中起着关键作用,并有助于植物的生长发育。在中国,葫芦科植物是一种重要且营养丰富的蔬菜作物,具有很高的药用价值和社会经济价值。在这篇综述中,我们讨论了 MYB TFs 的结构和特性,以及它们如何调控花的发育、果实的成熟、果实的品质和黄酮类化合物的生物合成。此外,我们还强调了 MYB TFs 在调控生物和非生物胁迫抗性方面的作用和贡献。这篇综述将为 MYB TF 更有效地应用于葫芦科作物的品质控制、抗逆研究和分子育种提供新的参考。
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引用次数: 0
Systematic approach of polyploidy as an evolutionary genetic and genomic phenomenon in horticultural crops 将多倍体作为园艺作物进化遗传和基因组现象的系统方法。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-24 DOI: 10.1016/j.plantsci.2024.112236
Abdul Basit , Ki-Byung Lim

Polyploidy is thought to be an evolutionary and systematic mechanism for gene flow and phenotypic advancement in flowering plants. It is a natural phenomenon that promotes diversity by creating new permutations enhancing the prime potentials as compared to progenitors. Two different pathways have been recognized in studying polyploidy in nature; mitotic or somatic chromosome doubling and cytogenetics variation. Secondly, the vital influence of being polyploid is its heritable property (unreduced reproductive cells) formed during first and second-division restitution (FDR & SDR). Different approaches either chemical (Colchicine, Oryzalin, Caffeine, Trifuralin, or phosphoric amides) or gaseous i.e. Nitrous oxide have been deliberated as strong polyploidy causing agents. A wide range of cytogenetic practices like chromosomes study, ploidy, genome analysis, and plant morphology and anatomy have been studied in different plant species. Flow cytometry for ploidy and chromosome analysis through fluorescence and genomic in situ hybridization (FISH & GISH) are the basic methods to evaluate heredity substances sampled from leaves and roots. Many horticultural crops have been developed successfully and released commercially for consumption. Moreover, some deep detailed studies are needed to check the strong relationship between unique morphological features and genetic makeup concerning genes and hormonal expression in a strong approach.

多倍体被认为是开花植物基因流动和表型发展的一种进化和系统机制。多倍体是一种自然现象,它通过创造新的排列组合来促进多样性,与祖先相比,它能增强原始潜力。研究自然界中的多倍体有两种不同的途径:有丝分裂或体细胞染色体加倍和细胞遗传学变异。其次,多倍体的重要影响在于其在第一次和第二次分裂恢复(FDR 和 SDR)过程中形成的可遗传特性(未还原生殖细胞)。不同的方法,无论是化学方法(秋水仙碱、桔梗苷、咖啡因、三氟呋喃或磷酸酰胺)还是气体方法,如氧化亚氮,都被认为是导致多倍体的强效药剂。对不同植物物种进行了广泛的细胞遗传学研究,如染色体研究、倍性研究、基因组分析以及植物形态和解剖学研究。通过荧光和基因组原位杂交(FISH 和 GISH)进行染色体倍性和染色体分析的流式细胞仪是评估从叶片和根部取样的遗传物质的基本方法。许多园艺作物已成功开发并投入商业化生产。此外,还需要进行一些深入细致的研究,以检查独特的形态特征与基因和激素表达的遗传构成之间的密切关系。
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引用次数: 0
Characterization and fine mapping of cold-inducible parthenocarpy in cucumber (Cucumis sativus L.) 黄瓜(Cucumis sativus L.)冷诱导孤雌生殖的特征和精细图谱。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-23 DOI: 10.1016/j.plantsci.2024.112237
Yongjiao Meng , Ji Li , Pinyu Zhu, Yuhui Wang, Chunyan Cheng, Qinzheng Zhao, Jinfeng Chen

Cold stress detrimentally influences fruit development, leading to a substantial yield reduction in many fruit-bearing vegetables. Cucumber, a vegetable of subtropical origin, is especially sensitive to cold. Cold-inducible parthenocarpy (CIP) promises fruit yield under cold conditions. Previously, we identified a CIP line EC5 in cucumber, which showed strong parthenocarpy and sustained fruit growth under cold conditions (16°C day/10°C night). However, the candidate gene and genetic mechanism underlying CIP in cucumber remain unknown. In this study, both BSA-seq and conventional QTL mapping strategies were employed on F2 populations to delve into the genetic control of CIP. A single QTL, CIP5.1, was consistently mapped across two winter seasons in 2021 and 2022. Fine mapping delimited the CIP locus into a 38.3 kb region on chromosome 5, harboring 8 candidate genes. Among these candidates, CsAGL11 (CsaV3_5G040370) was identified, exhibiting multiple deletions/insertions in the promoter and 5′UTR region. The CsAGL11 gene encodes a MADS-box transcription factor protein, which is homologous to the genes previously recognized as negative regulators in ovule and fruit development of Arabidopsis and tomato. Correspondingly, cold treatment resulted in decreased expression of CsAGL11 during the early developmental stage of the fruit in EC5. A promoter activity assay confirmed promoter polymorphisms leading to weak transcriptional activation of CsAGL11 under cold conditions. This study deepens our understanding of the genetic characteristics of CIP and elucidates the potential role of the CsAGL11 gene in developing cucumber cultivars with enhanced fruiting under cold conditions.

冷胁迫会对果实发育产生不利影响,导致许多结果蔬菜大幅减产。黄瓜是一种亚热带蔬菜,对寒冷特别敏感。冷诱导孤雌生殖(CIP)可提高低温条件下的果实产量。此前,我们在黄瓜中发现了一个 CIP 品系 EC5,该品系在寒冷条件下(白天 16°C / 夜间 10°C)表现出很强的孤雌生殖性和持续的果实生长。然而,黄瓜 CIP 的候选基因和遗传机制仍然未知。本研究在F2群体中采用了BSA-seq和传统的QTL作图策略,以深入研究CIP的遗传控制。在2021年和2022年的两个冬季,对单个QTL(CIP5.1)进行了一致的测绘。精细作图将 CIP 基因座划分为 5 号染色体上的 38.3kb 区域,其中包含 8 个候选基因。在这些候选基因中,确定了 CsAGL11(CsaV3_5G040370),该基因在启动子和 5'UTR 区域有多个缺失/插入。CsAGL11 基因编码一种 MADS-box 转录因子蛋白,与之前被认为是拟南芥和番茄胚珠和果实发育负调控因子的基因具有同源性。相应地,冷处理导致 EC5 果实早期发育阶段 CsAGL11 的表达量减少。启动子活性测定证实了启动子多态性导致 CsAGL11 在低温条件下的弱转录激活。这项研究加深了我们对CIP遗传特征的了解,并阐明了CsAGL11基因在开发寒冷条件下结果能力更强的黄瓜栽培品种中的潜在作用。
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引用次数: 0
Phloem-specific overexpression of AtOPT6 alters glutathione, phytochelatin, and cadmium distribution in Arabidopsis thaliana 拟南芥韧皮部特异性过表达 AtOPT6 会改变谷胱甘肽、植物螯合素和镉在拟南芥中的分布。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-22 DOI: 10.1016/j.plantsci.2024.112238
Arunee Wongkaew , Shin-ichi Nakamura , Hiroki Rai , Tadashi Yokoyama , Sutkhet Nakasathien , Naoko Ohkama-Ohtsu

The Arabidopsis oligopeptide transporter AtOPT6 is reportedly involved in the long-distance transport of thiol compounds into sink organs. In the present study, transgenic Arabidopsis lines overexpressing AtOPT6 under the control of a phloem-specific promoter, sucrose-proton symporter 2 (pSUC2), were analyzed for thiol and cadmium (Cd) distribution during the reproductive stage, both with and without Cd exposure. Phloem specific AtOPT6-overexpressing lines did not exhibit an evident impact on bolting time. In the absence of Cd exposure, these transgenic lines showed significantly enhanced transport of endogenous glutathione into siliques, accompanied by a reduction in the glutathione content of flowers and roots during the reproductive stage. Additionally, exposure of the roots of the phloem specific AtOPT6-overexpressing lines to Cd altered the distribution of thiol compounds, resulting in an increase in the content of phytochelatins in sink organs, contributing to a significant elevation of Cd contents in reproductive sink. Our findings confirm the crucial role of AtOPT6 in unloading phytochelatin-Cd conjugates from the phloem into sink organ.

据报道,拟南芥寡肽转运体 AtOPT6 参与了硫醇化合物向吸收器官的长距离转运。在本研究中,在韧皮部特异性启动子蔗糖-质子交感蛋白酶 2(pSUC2)的控制下,过表达 AtOPT6 的转基因拟南芥品系在生殖期分析了硫醇和镉(Cd)的分布情况,包括接触镉和不接触镉的情况。叶绿体特异性 AtOPT6 基因过表达株系对开花时间没有明显影响。在不接触镉的情况下,这些转基因品系表现出内源谷胱甘肽向韧皮部的转运明显增强,同时生殖期花和根中的谷胱甘肽含量降低。此外,将韧皮部特异性 AtOPT6 基因过表达株系的根暴露于镉中会改变巯基化合物的分布,导致吸收汇器官中植物螯合素含量的增加,从而导致生殖汇中镉含量的显著升高。我们的研究结果证实了 AtOPT6 在将植物螯合素-镉共轭物从韧皮部卸载到下沉器官中的关键作用。
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引用次数: 0
Eight hydroxyproline-O-galactosyltransferases play essential roles in female reproductive development 八种羟脯氨酸-O-半乳糖基转移酶在女性生殖发育过程中发挥着重要作用。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-21 DOI: 10.1016/j.plantsci.2024.112231
Diana Moreira , Dasmeet Kaur , Sara Fourbert-Mendes , Allan M. Showalter , Sílvia Coimbra , Ana Marta Pereira

In angiosperms, ovules give rise to seeds upon fertilization. Thus, seed formation is dependent on both successful ovule development and tightly controlled communication between female and male gametophytes. During establishment of these interactions, cell walls play a pivotal role, especially arabinogalactan-proteins (AGPs). AGPs are highly glycosylated proteins decorated by arabinogalactan side chains, representing 90 % of the AGP molecule. AGP glycosylation is initiated by a reaction catalysed by hydroxyproline-O-galactosyltransferases (Hyp-GALTs), specifically eight of them (GALT2–9), which add the first galactose to Hyp residues. Five Hyp-GALTs (GALT2, 5, 7, 8 and 9) were previously described as essential for AGP functions in pollen and ovule development, pollen-pistil interactions, and seed morphology. In the present work, a higher order Hyp-GALT mutant (23456789) was studied, with a high degree of under-glycosylated AGPs, to gain deeper insight into the crucial roles of these eight enzymes in female reproductive tissues. Notably, the 23456789 mutant demonstrated a high quantity of unfertilized ovules, displaying abnormal callose accumulation both at the micropylar region and, sometimes, throughout the entire embryo sac. Additionally, this mutant displayed ovules with abnormal embryo sacs, had a disrupted spatiotemporal distribution of AGPs in female reproductive tissues, and showed abnormal seed and embryo development, concomitant with a reduction in AGP-GlcA levels. This study revealed that at least three more enzymes exhibit Hyp-O-GALT activity in Arabidopsis (GALT3, 4 and 6), and reinforces the crucial importance of AGP carbohydrates in carrying out the biological functions of AGPs during plant reproduction.

在被子植物中,胚珠受精后产生种子。因此,种子的形成既依赖于胚珠的成功发育,也依赖于雌雄配子体之间严格控制的交流。在建立这些相互作用的过程中,细胞壁起着关键作用,尤其是阿拉伯半乳聚糖蛋白(AGPs)。AGPs 是高度糖基化的蛋白质,由阿拉伯半乳聚糖侧链装饰,占 AGP 分子的 90%。AGP 糖基化是由羟脯氨酸-O-半乳糖基转移酶(Hyp-GALTs)催化反应启动的,特别是其中的 8 个(GALT2-9),它们将第一个半乳糖加到 Hyp 残基上。以前曾描述过五个 Hyp-GALT(GALT2、5、7、8 和 9)对 AGP 在花粉和胚珠发育、花粉与雌蕊相互作用以及种子形态方面的功能至关重要。在本研究中,我们研究了一个高阶Hyp-GALT突变体(23456789),该突变体具有高度糖基化不足的AGP,以深入了解这八种酶在雌性生殖组织中的关键作用。值得注意的是,23456789 突变体表现出大量的未受精胚珠,在小柱区和有时在整个胚囊都表现出异常的胼胝质积累。此外,该突变体还表现出胚囊异常的胚珠,雌性生殖组织中 AGP 的时空分布紊乱,种子和胚发育异常,同时 AGP-GlcA 水平降低。这项研究揭示了拟南芥中至少还有三种酶具有 Hyp-O-GALT 活性(GALT3、4 和 6),并强化了 AGP 碳水化合物在植物生殖过程中发挥 AGP 生物功能的关键重要性。
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引用次数: 0
Optimizing pollen germination and subcellular dynamics in pollen tube of Torreya grandis 优化香榧花粉管中的花粉萌发和亚细胞动力学。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-21 DOI: 10.1016/j.plantsci.2024.112227
Shuai Hu , Chengqiao Wang , Rui Zhang , Yanli Gao , Keyu Li , Jinbo Shen

Torreya grandis, a dioecious Taxaceae species of significant economic value in southeast China, presents challenges for natural pollination due to asynchronous maturation of its sex organs and low pollen vitality. In order to enhance fertilization success through artificial pollination of T. grandis, this study investigated the optimal conditions for in vitro pollen germination and pollen tube growth of T. grandis. The optimal in vitro growth medium was found to contain 29 mM sucrose, 0.8 mM H3BO3, 0.72 mM CaCl2, and 0.32 mM MgSO4, supplemented with 4 μM NAA, 2 μM GA3, and 5 μM 2,4-D at pH=5.6. Under these conditions, we achieved a maximum pollen germination ratio of 69.99 ± 5.17 % and a pollen tube length of 34.38 ± 6.04 µm after 6 days germination at 28°C. FM4–64 dye and Mitotracker Red staining revealed highly dynamics of vesicles and mitochondria during germination, which were accumulated at the tip of pollen tube and exhibited biphasic movement patterns. The total number, motion rate, and movement velocity of vesicles as well as mitochondria showed an initially increase followed by a gradual decrease pattern. The presence of sucrose in the medium significantly increased the dynamics and metabolic activity of both vesicles and mitochondria, which may relate with higher pollen germination ratio and faster pollen tube growth compared to sucrose-depleted conditions. Thus, these findings shed light on the physiological characteristics of Torreya pollen germination and provide scientific information for improving Torreya fruit yield through artificial pollination.

大叶香榧(Torreya grandis)是中国东南地区具有重要经济价值的雌雄异株紫杉科植物,由于其性器官成熟不同步和花粉活力低,给自然授粉带来了挑战。为了提高人工授粉的受精成功率,本研究探讨了大叶紫檀体外花粉萌发和花粉管生长的最佳条件。最佳离体生长培养基为 29mM 蔗糖、0.8mM H3BO3、0.72mM CaCl2 和 0.32mM MgSO4,辅以 4μM NAA、2μM GA3 和 5μM 2,4-D,pH=5.6。在这些条件下,28℃条件下发芽 6 天后,花粉萌发率达到 69.99 ± 5.17%,花粉管长度达到 34.38 ± 6.04µm。FM4-64染料和Mitotracker Red染色显示,小泡和线粒体在萌发过程中具有高度动态性,它们聚集在花粉管顶端,呈现双相运动模式。囊泡和线粒体的总数量、运动速率和运动速度都呈现出先增加后逐渐减少的规律。与不含蔗糖的条件相比,培养基中蔗糖的存在明显提高了液泡和线粒体的活力和代谢活性,这可能与花粉萌发率更高和花粉管生长更快有关。因此,这些发现揭示了香榧花粉萌发的生理特点,为通过人工授粉提高香榧果实产量提供了科学信息。
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引用次数: 0
Unlocking the genetic basis of vitamin E content in sweet corn kernels: Expanding breeding targets through genome-wide association studies 揭开甜玉米粒中维生素 E 含量的遗传基础:通过全基因组关联研究扩大育种目标。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-20 DOI: 10.1016/j.plantsci.2024.112233
Kun Li , Yongtao Yu , Nan Zhang , Lihua Xie , Wenjie Huang , Xitao Qi , Wu Li , Chunyan Li , Tianxiang Wen , Wenguang Zhu , Shijuan Yan , Gaoke Li , Xinbo Guo , Jianguang Hu

Tocochromanols, collectively known as Vitamin E, serve as natural lipid-soluble antioxidants that are exclusively obtained through dietary intake in humans. Synthesized by all plants, tocochromanols play an important role in protecting polyunsaturated fatty acids in plant seeds from lipid peroxidation. While the genes involved in tocochromanol biosynthesis have been fully elucidated in Arabidopsis thaliana, Oryza sativa and Zea mays, the genetic basis of tocochromanol accumulation in sweet corn remains poorly understood. This gap is a consequence of limited natural genetic diversity and harvest at immature growth stages. In this study, we conducted comprehensive genome-wide association studies (GWAS) on a sweet corn panel of 295 individuals with a high-density molecular marker set. In total, thirteen quantitative trait loci (QTLs) for individual and derived tocochromanol traits were identified. Our analysis identified novel roles for three genes, ZmCS2, Zmshki1 and ZmB4FMV1, in the regulation of α-tocopherol accumulation in sweet corn kernels. We genetically validated the role of Zmshki1 through the generation of a knock-out line using CRISPR-Cas9 technology. Further gene-based GWAS revealed the function of the canonical tyrosine metabolic enzymes ZmCS2 and Zmhppd1 in the regulation of total tocochromanol content. This comprehensive assessment of the genetic basis for variation in vitamin E content establishes a solid foundation for enhancing vitamin E content not only in sweet corn, but also in other cereal crops.

Tocochromanols 统称为维生素 E,是一种天然脂溶性抗氧化剂,人类只能通过膳食摄入这种物质。所有植物都会合成维生素 E,它在保护植物种子中的多不饱和脂肪酸免受脂质过氧化反应方面发挥着重要作用。虽然参与拟南芥、黑麦草和玉米中托可色醇生物合成的基因已被完全阐明,但人们对甜玉米中托可色醇积累的遗传基础仍然知之甚少。这一空白是有限的天然遗传多样性和在未成熟生长阶段收获的结果。在本研究中,我们利用高密度分子标记集对甜玉米小组的 295 个个体进行了全面的全基因组关联研究(GWAS)。总共确定了 13 个个体和衍生羰基色醇性状的数量性状位点(QTL)。我们的分析确定了 ZmCS2、Zmshki1 和 ZmB4FMV1 这三个基因在调控甜玉米籽粒中α-生育酚积累方面的新作用。我们利用 CRISPR-Cas9 技术产生了一个基因敲除品系,从遗传学上验证了 Zmshki1 的作用。进一步基于基因的 GWAS 发现了典型酪氨酸代谢酶 ZmCS2 和 Zmhppd1 在调节总生育酚含量中的功能。这项对维生素 E 含量变异遗传基础的全面评估不仅为提高甜玉米的维生素 E 含量,也为提高其他谷类作物的维生素 E 含量奠定了坚实的基础。
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引用次数: 0
Comparative transcriptome analysis of Cyperus esculentus and C. rotundus with contrasting oil contents in tubers defines genes and regulatory networks involved in oil accumulation 对块茎中含油量截然不同的香附和腐草进行转录组比较分析,确定了参与油脂积累的基因和调控网络。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-16 DOI: 10.1016/j.plantsci.2024.112230
Xue Bai , Mingyong Tang , Xiaodi Hu , Ping Huang , Yuan Wu , Tao Chen , Huiying He , Zeng-Fu Xu

Plant vegetative organs present great potential for lipid storage, with tubers of Cyperus esculentus as a unique example. To investigate the genome and transcriptomic features of C. esculentus and related species, we sequenced and assembled the C. esculentus genome at the contig level. Through a comparative study of high-quality transcriptomes across 36 tissues from high-oil and intermediate-oil C. esculentus and low-oil Cyperus rotundus, we identified potential genes and regulatory networks related to tuber oil accumulation. First, we identified tuber-specific genes in two C. esculentus cultivars. Second, genes involved in fatty acid (FA) biosynthesis, triacylglycerol synthesis, and TAG packaging presented increased activity in the later stages of tuber development. Notably, tubers with high oil contents presented higher levels of these genes than those with intermediate oil contents did, whereas tubers with low oil contents presented minimal gene expression. Notably, a large fragment of the FA biosynthesis rate-limiting enzyme-encoding gene BCCP1 was missing from the C. rotundus transcript, which might be responsible for blocking FA biosynthesis in its tubers. WGCNA pinpointed a gene module linked to tuber oil accumulation, with a coexpression network involving the transcription factors WRI1, MYB4, and bHLH68. The ethylene-related genes in this module suggest a role for ethylene signaling in oil accumulation, which is supported by the finding that ethylene (ETH) treatment increases the oil content in C. esculentus tubers. This study identified potential genes and networks associated with tuber oil accumulation in C. esculentus, highlighting the role of specific genes, transcription factors, and ethylene signaling in this process.

植物的无性器官具有储存脂质的巨大潜力,香附块茎就是一个独特的例子。为了研究 C. esculentus 及相关物种的基因组和转录组特征,我们对 C. esculentus 基因组进行了等位基因测序和组装。通过对高油和中等油C. esculentus以及低油Cyperus rotundus的36个组织的高质量转录组进行比较研究,我们发现了与块茎油积累有关的潜在基因和调控网络。首先,我们确定了两个 C. esculentus 栽培品种的块茎特异性基因。其次,参与脂肪酸(FA)生物合成、三酰甘油合成和 TAG 包装的基因在块茎发育后期表现出更高的活性。值得注意的是,与中等含油量的块茎相比,高含油量的块茎中这些基因的水平更高,而低含油量的块茎中基因表达量极低。值得注意的是,腐霉菌转录本中缺少一个FA生物合成限速酶编码基因BCCP1的大片段,这可能是阻碍其块茎中FA生物合成的原因。WGCNA 确定了一个与块茎油积累有关的基因模块,其共表达网络涉及转录因子 WRI1、MYB4 和 bHLH68。该模块中的乙烯相关基因表明乙烯信号在油脂积累中的作用,而乙烯(ETH)处理可增加 C. esculentus 块茎中的油脂含量这一发现也支持了这一点。这项研究确定了与 C. esculentus 块茎油积累相关的潜在基因和网络,突出了特定基因、转录因子和乙烯信号在这一过程中的作用。
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引用次数: 0
The construction of a maize-teosinte introgression population and quantitative trait loci analysis of their 21 agronomic traits 构建玉米-teosinte 引种群体并对其 21 个农艺性状进行定量性状位点分析。
IF 4.2 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-15 DOI: 10.1016/j.plantsci.2024.112226
Yiping Cui , Xin Xiao , Mumu Wang , Mengjiao Zhu , Nana Yuyama , Jingru Zheng , Candong Xiong , Jiangjiang Liu , Sumeng Wang , Yuru Yang , Jun Chen , Hongwei Cai

Teosinte is a progenitor species of maize (Zea mays ssp. mays) that retains a significant reservoir of genetic resources unaltered via the domestication process. To harness and explore the genetic reservoirs inherent in teosinte, we used the cultivated publicly inbred line H95 and wild species PI566673 (Zea mays ssp. mexicana) to develop a set of introgression lines (ILs), including 366 BC2F5 lines. Using these lines, 12481 high-quality polymorphic homozygous single nucleotide polymorphisms were converted into 2358 bin markers based on Genotyping by Target Sequencing technology. The homozygous introgression ratio in the ILs was approximately 12.1 % and the heterozygous introgression ratio was approximately 5.7 %. Based on the population phenotypic data across 21 important agronomic traits collected in Sanya and Beijing, 185 and 156 quantitative trait loci (QTLs) were detected in Sanya and Beijing, respectively, with 64 stable QTLs detected in both locations. We detected 12 QTL clusters spanning 10 chromosomes consisting of diverse QTLs related to yield traits such as grain size and weight. In addition, we identified useful materials in the ILs for further gene cloning of related variations. For example, some heterogeneous inbred families with superior genetic purity, shorter target heterozygotes, and some ILs exhibit clear morphological variation associated with plant growth, development, and domestication, manifesting traits such as white stalks, sharp seeds, and cob shattering. In conclusion, our results provide a robust foundation for delving into the genetic reservoirs of teosinte, presenting a wealth of genetic resources and offering insight into the genetic architecture underlying maize agronomic traits.

teosinte是玉米(Zea mays ssp. mays)的祖先物种,它保留了大量的遗传资源库,在驯化过程中未被改变。为了利用和探索茶新丁固有的遗传资源库,我们利用栽培的公共近交系 H95 和野生种 PI566673(Zea mays ssp.mexicana)开发了一套引种系(IL),其中包括 366 个 BC2F5 系。利用这些品系,基于目标测序基因分型技术将 12481 个高质量多态性同源单核苷酸多态性转化为 2358 个二进制标记。ILs中的同源引种率约为12.1%,异源引种率约为5.7%。根据在三亚和北京采集的21个重要农艺性状的群体表型数据,分别在三亚和北京检测到185个和156个数量性状位点(QTLs),其中64个稳定的QTLs在两地均被检测到。我们在 10 条染色体上检测到 12 个 QTL 群,其中包括与谷粒大小和重量等产量性状有关的各种 QTL。此外,我们还在ILs中发现了有用的材料,可用于进一步克隆相关变异基因。例如,一些遗传纯度较高的异源近交系、目标杂合子较短的异源近交系和一些ILs表现出与植物生长、发育和驯化相关的明显形态变异,表现出白秆、种子尖锐和谷粒破碎等性状。总之,我们的研究结果为深入研究茶树蛋白的遗传资源库奠定了坚实的基础,提供了丰富的遗传资源,并有助于深入了解玉米农艺性状的遗传结构。
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Plant Science
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