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Carbapenemen-resistant Enterobacterales: An issue of global concern 耐碳青霉烯类肠杆菌:全球关注的问题
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2024.05.001
Marcela Nastro
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引用次数: 0
Prevalencia y distribución geográfica de las enfermedades de transmisión sexual de los bovinos en la provincia de Formosa, Argentina [阿根廷福尔摩沙省牛性传播疾病的流行率和地理分布]。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.07.004
María Nair Viola , Iris Carolina Elías , Marcelo Signorini , Ana Ines Molineri , Ana María Russo , Patricia Andrea Zimmer , Laura Analía Lozina , Juana Noemí Gimenez

Bovine genital campylobacteriosis (BGC) and bovine trichomonosis (BT) are sexually transmitted diseases (STDs) that affect bovine breeding herds, decreasing their reproductive efficiency. The objective of this work was to estimate the prevalence of these diseases and their temporal-spatial distribution in the province of Formosa, Argentina. The cross-sectional study conducted between 2018 and 2021 included a total of 15,571 bulls, inter-herd prevalence being 29.62% and 17.23% for BGC and BT, respectively. The prevalence of positive animals was 2.05% for BGC and 0.43% for BT. The temporal-spatial analysis of BGC showed two distinct spatial groupings, one group had a low risk of contracting the disease (RR = 0.13; p < 0.001; 2018–2021) while the other group had a high risk (RR = 2.84; p < 0.001; 2020–2021). BT had a high-risk group for the disease (RR = 35.24; p < 0.001; 2019). This study shows that STDs are endemic in the region, providing updated and valuable information as a tool for the health management of these diseases.

牛生殖器弯曲杆菌病(BGC)和牛滴虫病(BT)是一种性传播疾病(STD),会影响牛的繁殖群,降低其繁殖效率。这项工作的目的是估计这些疾病在阿根廷福尔摩沙省的流行率及其时空分布。2018年至2021年间进行的横断面研究共包括15571头公牛,BGC和BT的群体间患病率分别为29.62%和17.23%。BGC阳性动物的患病率为2.05%,BT阳性动物的发病率为0.43%。BGC的时间-空间分析显示了两个不同的空间组,一组感染该疾病的风险较低(RR=0.13;p<0.001;2018-2021),而另一组感染风险较高(RR=2.84;p<0.001;2020-2021)。BT是该疾病的高危人群(RR=35.24;p<0.001;2019)。这项研究表明,性传播疾病在该地区流行,为这些疾病的健康管理提供了最新和有价值的信息。
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引用次数: 0
The microPIXE technique to understand the distribution of heavy metals in arbuscular mycorrhizal symbiosis 利用微PIXE技术了解重金属在假根菌根共生中的分布。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.12.006
M. Statello , R.P. Colombo , E.M. de la Fournière , M.E. Debray , A.M. Godeas , V.A. Silvani
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引用次数: 0
Carpogenic germination of Sclerotinia sclerotiorum sclerotia in Brassica oleracea var gemmifera (VN: Brussels sprouts) in North Patagonia, Argentina 阿根廷北巴塔哥尼亚甘蓝菜(Brassica oleracea var gemmifera)(VN:球芽甘蓝)中硬粒菌的鲤鱼发芽。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.12.005
A.G. Scarso , M.C. Sosa , M.J. Ousset , M.C. Lutz

In August 2018, symptoms of apical and basal rot resembling those caused by Sclerotinia sclerotiorum infection were observed in a commercial Brussels sprouts field in North Patagonia, Argentina. The incidence of apical and basal rot was 23.30% and 2.30%, respectively. Carpogenic germination of sclerotia was detected in shaded, highly humid soil areas. To our knowledge, this is the first report of carpogenic germination of sclerotia from S. sclerotiorum in North Patagonia.

2018年8月,在阿根廷北巴塔哥尼亚的一块商品芽甘蓝田里观察到了类似于由硬核菌(Sclerotinia sclerotiorum)感染引起的根尖腐烂和基部腐烂症状。顶腐病和基腐病的发病率分别为 23.30% 和 2.30%。在荫蔽、高湿度的土壤区域发现了硬菌的鲤科发芽。据我们所知,这是北巴塔哥尼亚首次报道硬核菌的鲤科萌芽。
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引用次数: 0
In house-development of a rapid immunochromatographic test for the detection of Escherichia coli in urine samples 内部开发用于检测尿液样本中大肠杆菌的快速免疫层析检测法
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.10.001
Paula Da Cunda , Amy Mónaco , María Moreno , María José Gonzalez , Paola Scavone , Luciana Robino

Urinary tract infections (UTIs) are a common health concern. Urine culture is the “gold standard” for UTI diagnosis but takes 48 h. Rapid methods like dipstick tests are used as point-of-care tests. However, their sensitivity and specificity are variable. In this work, a rapid immunochromatographic test (IT) for detecting Escherichia coli in urine was developed, and its performance was evaluated in urine samples from patients with suspected UTI. The “universal lateral flow assay kit” was employed using an E. coli capture antibody. One hundred and five (105) urine samples were analyzed using the IT, dipstick test, and urine culture. The sensitivity of the IT was 74.5%, specificity 88.9%, positive predictive value (PPV) 86.3%, and negative predictive value (NPV) 78.7%. The combination of the IT with the dipstick test increases sensitivity to 94.1%, specificity to 66.7%, PPV to 72.7%, and NPV to 92.3%. Using the IT for detecting E. coli in urine could be a valuable technique for UTI screening, showing better specificity and diagnostic precision but lower sensitivity than the dipstick test. Based on these results, we propose that the combined use of both screening techniques would allow a rapid and more precise diagnosis of UTI, rationalizing the indication for empirical antibiotics.

尿路感染(UTI)是一种常见的健康问题。尿培养是诊断尿路感染的 "金标准",但需要 48 小时。然而,它们的灵敏度和特异性各不相同。本研究开发了一种检测尿液中大肠埃希菌的快速免疫层析检测法(IT),并在疑似尿毒症患者的尿样中对其性能进行了评估。采用 "通用侧流检测试剂盒",使用大肠杆菌捕获抗体。对 105 份尿液样本进行了分析,分别使用了 IT、浸量尺检测法和尿培养法。IT 的灵敏度为 74.5%,特异性为 88.9%,阳性预测值(PPV)为 86.3%,阴性预测值(NPV)为 78.7%。将 IT 与浸量尺检测结合使用可将灵敏度提高到 94.1%,特异性提高到 66.7%,PPV 提高到 72.7%,NPV 提高到 92.3%。使用 IT 检测尿液中的大肠杆菌可能是一种有价值的尿路感染筛查技术,其特异性和诊断精确度均优于浸量棒检测,但灵敏度低于浸量棒检测。基于这些结果,我们建议将这两种筛查技术结合起来使用,这样就能更快速、更准确地诊断出尿毒症,从而合理地确定经验性抗生素的适应症。
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引用次数: 0
Inhibitory action of antibiotics on Kluyveromyces marxianus 抗生素对 Kluyveromyces marxianus 的抑制作用。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.12.004
Rafael Lisandro Althaus, Orlando Guillermo Nagel, Dafna Eluk

A bioassay containing Kluyveromyces marxianus in microtiter plates was used to determine the inhibitory action of 28 antibiotics (aminoglycosides, beta-lactams, macrolides, quinolones, tetracyclines and sulfonamides) against this yeast in whey. For this purpose, the dose–response curve for each antibiotic was constructed using 16 replicates of 12 different concentrations of the antibiotic. The plates were incubated at 40 °C until the negative samples exhibited their indicator (5–7 h). Subsequently, the absorbances of the yeast cells in each plate were measured by the turbidimetric method (λ = 600 nm) and the logistic regression model was applied. The concentrations causing 10% (IC10) and 50% (IC50) of growth inhibition of the yeast were calculated. The results allowed to conclude that whey contaminated with cephalosporins, quinolones and tetracyclines at levels close to the Maximum Residue Limits inhibits the growth of K. marxianus. Therefore, previous inactivation treatments should be implemented in order to re-use this contaminated whey by fermentation with K. marxianus.

使用微孔板中的马氏克鲁维酵母菌进行生物测定,以确定 28 种抗生素(氨基糖苷类、β-内酰胺类、大环内酯类、喹诺酮类、四环素类和磺胺类)对乳清中这种酵母菌的抑制作用。为此,使用 12 种不同浓度的抗生素进行 16 次重复,构建了每种抗生素的剂量-反应曲线。平板在 40°C 下培养,直到阴性样品显示出指示剂(5-7 小时)。随后,用比浊法(λ=600 纳米)测量每个平板中酵母细胞的吸光度,并应用逻辑回归模型。计算出对酵母的生长有 10%(IC10)和 50%(IC50)抑制作用的浓度。结果得出的结论是,被头孢菌素、喹诺酮类和四环素污染的乳清在接近最大残留限量的水平下会抑制马氏酵母菌的生长。因此,为了通过马钱子酵母菌发酵重新利用这些受污染的乳清,应事先进行灭活处理。
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引用次数: 0
Genomic characterization of Moraxella bovis and Moraxella bovoculi Uruguayan strains isolated from calves with infectious bovine keratoconjunctivitis 从患有传染性牛角膜结膜炎的犊牛身上分离出的牛莫拉菌和牛莫拉菌乌拉圭株的基因组特征。
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.12.003
Lucía Bilbao , Sofía Acquistapace , Ana Umpiérrez , Pablo Smircich , Pablo Alonzo , José R. Sotelo-Silveira , Pablo Zunino

Infectious bovine keratoconjunctivitis (IBK) is an ocular disease that affects bovines and has significant economic and health effects worldwide. Gram negative bacteria Moraxella bovis and Moraxella bovoculi are its main etiological agents. Antimicrobial therapy against IBK is often difficult in beef and dairy herds and, although vaccines are commercially available, their efficacy is variable and dependent on local strains. The aim of this study was to analyze for the first time the genomes of Uruguayan clinical isolates of M. bovis and M. bovoculi. The genomes were de novo assembled and annotated; the genetic basis of fimbrial synthesis was analyzed and virulence factors were identified. A 94% coverage in the reference genomes of both species, and more than 80% similarity to the reference genomes were observed. The mechanism of fimbrial phase variation in M. bovis was detected, and the tfpQ orientation of these genes confirmed, in an inversion region of approximately 2.18 kb. No phase variation was determined in the fimbrial gene of M. bovoculi. When virulence factors were compared between strains, it was observed that fimbrial genes have 36.2% sequence similarity. In contrast, the TonB-dependent lactoferrin/transferrin receptor exhibited the highest percentage of amino acid similarity (97.7%) between strains, followed by cytotoxins MbxA/MbvA and the ferric uptake regulator. The role of these virulence factors in the pathogenesis of IBK and their potential as vaccine components should be explored.

牛传染性角结膜炎(IBK)是一种影响牛的眼部疾病,对全世界的经济和健康都有重大影响。革兰氏阴性菌牛莫拉菌和牛莫拉菌是其主要病原体。在肉牛和奶牛群中,抗菌治疗 IBK 通常很困难,虽然市场上有疫苗出售,但其疗效不一,而且取决于当地的菌株。本研究的目的是首次分析乌拉圭临床分离的牛海绵状芽孢杆菌和牛小球海绵状芽孢杆菌的基因组。对基因组进行了全新的组装和注释;分析了纤丝合成的遗传基础,并确定了致病因子。两个物种的参考基因组覆盖率均为94%,与参考基因组的相似度均超过80%。在一个大约 2.18kb 的反转区域中,检测到了牛海绵状芽孢杆菌中的fimbrial 相位变异机制,并确认了这些基因的 tfpQ 方向。牛海绵状芽孢杆菌(M. bovoculi)的fimbrial基因未发现相位变异。对不同菌株的毒力因子进行比较后发现,fimbrial 基因有 36.2% 的序列相似性。相比之下,依赖于 TonB 的乳铁蛋白/转铁蛋白受体的氨基酸相似度最高(97.7%),其次是细胞毒素 MbxA/MbvA 和铁吸收调节器。应探讨这些毒力因子在 IBK 发病机制中的作用及其作为疫苗成分的潜力。
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引用次数: 0
Bacterial diversity using metagenomics of 16s rDNA in water kefir, an innovative source of probiotics for bee nutrition 利用 16s rDNA 元基因组学研究水酸乳中的细菌多样性--蜜蜂营养的创新益生菌来源
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.12.002
María A. Rodríguez , Leticia A. Fernández , Marina L. Díaz , Cristian A. Gallo , Miguel Corona , Jay D. Evans , Francisco J. Reynaldi

Water kefir is a sparkling, slightly acidic fermented beverage made from sugar, water, and water kefir grains, which are a mixture of yeast and bacteria. These grains produce a variety of fermentation compounds such as lactic acid, acetaldehyde, acetoin, ethanol and carbon dioxide. In this study, a high-throughput sequencing technique was used to characterize the bacterial composition of the original water kefir from which potential probiotics were obtained. We studied the bacterial diversity of both water kefir grains and beverages. DNA was extracted from three replicate samples of both grains and beverages using the Powerlyzer Microbial Kit. The hypervariable V1–V2 region of the bacterial 16S ribosomal RNA gene was amplified to prepare six DNA libraries. Between 1.4 M and 2.4 M base-pairs were sequenced for the library. In total, 28 721 971 raw reads were obtained from all the samples. Estimated species richness was higher in kefir beverage samples compared to grain samples. Moreover, a higher level of microbial alpha diversity was observed in the beverage samples. Particularly, the predominant bacteria in beverages were Anaerocolumna and Ralstonia, while in grains Liquorilactobacillus dominated, with lower levels of Leuconostoc and Oenococcus.

Although the bacterial diversity in kefir grains was low because only three genera were the most represented, all of them are LAB bacteria with the potential to serve as probiotics in the artificial feeding of bees.

水克菲尔是一种气泡型微酸发酵饮料,由糖、水和水克菲尔颗粒(酵母和细菌的混合物)制成。这些颗粒会产生多种发酵化合物,如乳酸、乙醛、乙酰丙酮、乙醇和二氧化碳。在这项研究中,我们采用了高通量测序技术来描述从中获得潜在益生菌的原始水酸乳的细菌组成特征。我们研究了开菲尔水颗粒和饮料中的细菌多样性。我们使用 Powerlyzer 微生物试剂盒从三个重复的谷物和饮料样本中提取了 DNA。扩增细菌 16S 核糖体 RNA 基因的 V1-V2 超变区,以制备六个 DNA 文库。对文库进行了 1.4 M 到 2.4 M 碱基对的测序。所有样本共获得 28 721 971 个原始读数。与谷物样品相比,克菲尔饮料样品的估计物种丰富度更高。此外,在饮料样品中还观察到了更高水平的微生物阿尔法多样性。特别是,饮料中最主要的细菌是 Anaerocolumna 和 Ralstonia,而在谷物中则以 Liquorilactobacillus 为主,Leuconostoc 和 Oenococcus 的含量较低。虽然克菲尔谷物中的细菌多样性较低,因为只有三个菌属的代表性最高,但所有这些菌属都是 LAB 菌,有可能成为蜜蜂人工饲养中的益生菌。
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引用次数: 0
The MVA vector expressing the F protein of bovine respiratory syncytial virus is immunogenic in systemic and mucosal immunization routes 表达牛呼吸道合胞病毒 F 蛋白的 MVA 载体在全身和粘膜免疫途径中具有免疫原性
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.07.006
Alejandra Ferella , Marina Mozgovoj , Débora Garanzini , María José Dus Santos , Gabriela Calamante , María Paula Del Médico Zajac

Bovine respiratory syncytial virus (BRSV) affects both beef and dairy cattle, reaching morbidity and mortality rates of 60–80% and 20%, respectively. The aim of this study was to obtain a recombinant MVA expressing the BRSV F protein (MVA-F) as a vaccine against BRSV and to evaluate the immune response induced by MVA-F after systemic immunization in homologous and heterologous vaccination (MVA-F alone or combined with a subunit vaccine), and after intranasal immunization of mice. MVA-F administered by intraperitoneal route in a homologous scheme elicited levels of neutralizing antibodies similar to those obtained with inactivated BRSV as well as better levels of IFN-γ secretion. In addition, nasal administration of MVA-F elicited local and systemic immunity with a Th1 profile. This study suggests that MVA-F is a good candidate for further evaluations combining intranasal and intramuscular routes, in order to induce local and systemic immune responses, to improve the vaccine efficacy against BRSV infection.

牛呼吸道合胞病毒(BRSV)对肉牛和奶牛都有影响,发病率和死亡率分别高达 60-80% 和 20%。本研究旨在获得表达 BRSV F 蛋白的重组 MVA(MVA-F)作为 BRSV 疫苗,并评估 MVA-F 在同源和异源(MVA-F 单独或与亚单位疫苗联合)全身免疫以及小鼠鼻内免疫后诱导的免疫反应。在同源方案中,MVA-F通过腹腔给药引起的中和抗体水平与灭活的BRSV相似,IFN-γ的分泌水平也更高。此外,鼻腔给药 MVA-F 还能激发局部和全身的 Th1 型免疫。这项研究表明,MVA-F 是一种很好的候选药物,可以结合鼻腔和肌肉注射途径进行进一步评估,以诱导局部和全身免疫反应,提高疫苗对 BRSV 感染的效力。
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引用次数: 0
Parásitos humanos en aguas superficiales de uso recreativo en Salta, Argentina 阿根廷萨尔塔娱乐性地表水中的人体寄生虫
IF 1.8 4区 生物学 Q4 MICROBIOLOGY Pub Date : 2024-04-01 DOI: 10.1016/j.ram.2023.11.001
Diego G. Sanguino-Jorquera , Hugo R. Poma , Verónica B. Rajal , María M. Juárez , Verónica P. Irazusta

Waterborne diseases can have different origins, micro-organisms such as bacteria and parasites being the most important ones. In this study, two recreational aquatic environments were studied in the province of Salta, Argentina. Water samples collected from three different locations, two from a creek and one from the outlet of a thermal complex, were monitored at four time points. Physicochemical and microbiological characterization of each point was conducted, as well as a search for parasites and amebae. Parasites were identified through optical microscopy observations and free-living amebae (FLA) were isolated by spiking in Petri dishes followed by subsequent molecular identification. Water samples from the outlet of the thermal complex showed different physicochemical characteristics from those of the creek. Bacterial indicators of contamination were detected at all points; however, the creek water had a significantly higher concentration of Pseudomonas sp. Sporadically, creek samples exhibited Ascaris spp. eggs, Giardia sp. cysts, and ancylostomid eggs. The presence of FLA was observed in all samples, 15 of which were isolated and identified as Acanthamoeba sp., mostly belonging to the T4 genotype. Parasite surveillance in recreational aquatic environments is an important complement to traditional microbial indicators for assessing water quality. The identified parasites represent a potential health risk for people using these environments.

水传播疾病有不同的起源;细菌和寄生虫是最重要的致病因子。在这项工作中,我们在萨尔塔省(阿根廷)一个休闲区附近的三个地点对水样进行了监测:两个地点位于一个热能综合体周围的溪流中,分别位于综合体排水口的上游和下游;第三个地点位于综合体排水口。一年中有四个月采集样本。对每个取样点的水样进行了物理化学和细菌学鉴定,并对水中的寄生虫和自由生活阿米巴虫(FLA)进行了检测。热工综合体出口处的水样显示出与溪流不同的物理化学特征。溪水样本中零星发现了蛔虫卵、贾第鞭毛虫包囊和蛔虫卵。在所有样本中都发现了 AVL;分离并鉴定出 15 个 AVL 为棘阿米巴虫,大部分属于 T4 基因型。对休闲水生环境中寄生虫的监测是对传统水质评估微生物指标的重要补充。所发现的寄生虫对使用这类环境的人群构成潜在的健康风险。
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引用次数: 0
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Revista Argentina de microbiologia
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