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Development and validation of a direct PCR based assay for the detection of Colletotrichum species on chili seeds 辣椒种子炭疽病菌直接PCR检测方法的建立与验证
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.1.12
S. Dhiman, N. Kumari, A. Badiyal, Vivek Sharma, P. Sharma
An investigation was executed to detect Colletotrichum truncatum (synonymous C. capsici) and C. coccodes in solo or as a disease complex through direct PCR (dPCR) in anthracnose-infected chili seeds. Direct PCR was performed with C. coccodes and C. truncatum-s specific markers and Tris-EDTA buffer aliquots (obtained from infected seeds soaked up to five hours) as source of template DNA. This method efficiently and specifically detected the respective species in seeds with minimum 2.5% infection, yielding species-specific ∼500 bp (C. truncatum) and ∼340 bp (C. coccodes) fragments without any non-specific amplification with other mycoflora. Further, the seeds used in the experiment were tested for their germination efficiency along with a complete set of dried seeds as control. Among the soaked seeds, germination frequency ranged between 50 (infected seeds) to 100% (healthy seeds) without any significant loss in germination, confirming the sustainability of the current protocol. We recommend the use of direct PCR from soaked seeds without prior DNA extraction as a cost-effective and quick method for detecting the pathogen directly from infected seeds in fields.
采用直接聚合酶链反应(dPCR)技术,在炭疽病感染的辣椒种子中单独或作为一个疾病复合体检测了辣椒炭疽杆菌和辣椒炭疽杆菌。用C. cocodes和C. truncatum-s特异性标记物和Tris-EDTA缓冲液(从浸渍5小时的感染种子中获得)作为模板DNA的来源进行直接PCR。该方法以最低2.5%的侵染率高效、特异地检测到种子中各自的菌种,产生菌种特异性的~ 500 bp (C. truncatum)和~ 340 bp (C. coccodes)片段,而无需与其他分枝杆菌进行非特异性扩增。此外,实验中使用的种子与一套完整的干燥种子作为对照,测试了它们的发芽效率。在浸泡过的种子中,萌发率在50%(感染种子)到100%(健康种子)之间,没有任何显著的萌发损失,证实了当前方案的可持续性。我们建议使用直接从浸渍种子中提取DNA的直接PCR方法,作为直接从田间感染种子中检测病原体的一种经济、快速的方法。
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引用次数: 2
Exposing Viburnum edule seeds to a sequence of temperatures affects the germination characteristics 将荚蒾种子暴露在不同的温度下会影响其萌发特性
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.2.07
Mark Baah-Acheamfour, J. Sobze
For many species of Viburnum, exposure to two distinct stratification sequences ─ warm to cold or cold to warm ─ may break embryo dormancy to initiate significant germination. Seeds of Viburnum edule were collected and moved through a series of cold-warm (4/20°C) or warm-cold (20/4°C) stratification to better understand precisely which temperature sequences and duration improve germination percentage (GRP), mean germination time (MGT), germination synchrony (SYN) and uncertainty (UNC), and time for seeds to reach 50% germination (t50). Seeds kept in cold-warm temperature sequences, on average, improved GRP by 24%, reduced MGT by 216 days and t50 by 97 days compared with those in the warm-cold stratification sequence. The warm-cold temperature sequence was more advantageous in improving the SYN (0.94 vs. 0.51) and reducing the UNC (0.21 vs. 0.96) indices than the cold-warm temperature sequence.
对许多Viburnum物种来说,暴露于两种不同的分层序列──从暖到冷或从冷到暖──可能会打破胚胎休眠,从而启动重要的发芽。收集紫荚豆种子,通过冷暖(4/20°C)或暖冷(20/4°C)分层,以更好地了解哪种温度序列和持续时间能提高发芽率(GRP)、平均发芽时间(MGT)、发芽同步(SYN)和不确定度(UNC),以及种子达到50%发芽时间(t50)。与冷暖层序相比,冷暖层序的种子平均GRP提高24%,MGT减少216 d, t50减少97 d。冷暖序列在提高SYN指数(0.94比0.51)和降低UNC指数(0.21比0.96)方面优于冷暖序列。
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引用次数: 0
Invited Review: Seed traits inform the germination niche for biodiverse ecological restoration 种子性状为生物多样性生态恢复提供萌发生态位信息
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.1.s.06
Emma L. Dalziell, Wolfgang Lewandrowski, L. Commander, C. Elliott, T. E. Erickson, E. P. Tudor, S. Turner, D. Merritt
Seeds are a primary source for generating plants for large-scale restoration and understanding the requirements for seed germination and establishment is fundamental to ecological restoration. Seed germination traits are central to defining the germination niche and identifying traits that may limit seedling establishment provides insights into how seeds may interact with the abiotic environment and the soil substrates specific to each restoration site and informs seed management practices. In this paper we review seed trait data derived from research to improve restoration practice across diverse ecosystems within Western Australia. We compile and evaluate seed trait data for up to 300 seed collections of 287 species that are used in restoration programmes to identify species, lifeform, and region-specific variation in seed dormancy, maximum germination, germination speed, base water potential, and germination niche breadth. Through a synthesis of this data, we outline our ecologically-guided approach to identifying key seed traits that support plant regeneration to improve the success of seed-based restoration across the biodiverse Western Australian landscape.
种子是大规模恢复植物的主要来源,了解种子萌发和建立的要求是生态恢复的基础。种子萌发特征是确定萌发生态位和识别可能限制幼苗建立的特征的核心,提供了种子如何与非生物环境和每个恢复地点特定的土壤基质相互作用的见解,并为种子管理实践提供了信息。在本文中,我们回顾了来自研究的种子性状数据,以改善西澳大利亚州不同生态系统的恢复实践。我们收集和评估了287个物种的300个种子标本的种子性状数据,这些数据用于恢复项目,以确定种子休眠、最大萌发、萌发速度、基本水势和萌发生态位宽度的物种、生命形式和区域特异性差异。通过对这些数据的综合,我们概述了我们的生态指导方法,以确定支持植物再生的关键种子性状,以提高西澳大利亚州生物多样性景观中基于种子的恢复的成功。
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引用次数: 5
Effects of antifungal plant extracts on improving maize seedling emergence and plant growth 抗真菌植物提取物对玉米幼苗出苗率和植株生长的影响
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.3.04
Rehema Erasto, R. Madege, N. Kilasi
Maize seeds are usually contaminated with seed-borne fungi which cause seed deterioration and seedling death. Seed treatment using chemical fungicides is a common practice, although fungicides can reduce seed longevity and lead to residues, resistance, and environmental pollution. This study was conducted to determine the effects of plant extracts (PEs; Azadirachta indica, Coffea Arabica, and Zingiber officinale) on seedling emergence and seedling vigour of certified (CS) and farmer-saved (FSS) seeds of maize. Seeds treated with water-extracted PEs had significantly higher seedling emergence with 85.8% and 61.7% for FSS and CS, respectively, while ethanol-extracted PEs had 6.7% and 7.5% seedling emergence for FSS and CS, respectively. The minimum mean number of days to the first emergence was less for seeds treated with water-extracted PEs (3.0 and 3.3 for FSS and CS, respectively) than those treated with ethanol-extracted PEs (6.3 and 7.0 for FSS and CS, respectively). According to this study, water-extracted PEs are potential candidates in seed treatment, because they have fewer adverse effects on seedling emergence and vigour. Although other studies mention PEs extracted using organic solvents to be the best, the study’s recommendation is to ensure that organic solvents are completely removed from PE solutions before using them.
玉米种子常被种传真菌污染,导致种子变质和幼苗死亡。使用化学杀菌剂处理种子是一种常见的做法,尽管杀菌剂会减少种子寿命,导致残留、抗性和环境污染。本研究旨在确定植物提取物(PEs;研究了印楝、阿拉比卡咖啡和生姜对认证(CS)和农民自保(FSS)玉米种子出苗率和幼苗活力的影响。水提PEs处理的种子出苗率显著高于FSS和CS,分别为85.8%和61.7%,而乙醇提PEs处理的种子出苗率分别为6.7%和7.5%。水提PEs处理的种子(FSS和CS分别为3.0和3.3天)比乙醇提取PEs处理的种子(FSS和CS分别为6.3和7.0天)到首次出苗的最短平均天数要短。根据本研究,水提pe对幼苗出苗和活力的不良影响较小,是种子处理的潜在候选物。虽然其他研究提到使用有机溶剂提取的PE是最好的,但该研究建议在使用PE溶液之前确保有机溶剂完全从PE溶液中去除。
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引用次数: 0
Effect of gibberellic acid treatment and alternating temperature on breaking physiological dormancy and germination in Penthorum chinense Pursh (Penthoraceae) 赤霉素酸处理和交变温度对中国草打破生理休眠和萌发的影响
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.2.04
Mi Hyun Lee, C. Song, Chongho Park, K. Song, Soon-Young Kim, Sea Hyun Kim, C. Na
Penthorum chinense (Penthoraceae) is a threatened South Korean medicinal plant used to treat alcohol-related diseases and prepare cosmetics in traditional Chinese medicine. Wetlands, the native habitat of this plant, have been decreasing owing to damage caused by landisation and urban development in recent years. In this study, we considered the effect of temperature and gibberellic acid treatment on P. chinense seed germination to improve conservation outcomes of the species. The optimum germination temperature was investigated using constant and alternating temperature treatments (60 conditions). In addition, gibberellic acid (GA3) treatment was performed to overcome physiological dormancy. We determined the germination (GP, %) and the number of days to reach 50% maximum germination (T50). The optimum temperature regime was 7°C / 23°C: GP was 95%, and T50 was 15 days. The GA3 treatment increased the GP of P. chinense seeds from 28 to 94% and decreased the T50 value from 14.6 to 6.3 days at concentrations above 40 mg L-1. After the GA3 treatment, the growth of radicles was delayed or inhibited. For the germination of P. chinense seeds, a diurnal temperature difference of ≥ 15°C is required.
Penthorum chinense (Penthoraceae)是一种濒危的韩国药用植物,在中医中用于治疗与酒精有关的疾病和制备化妆品。近年来,由于土地开垦和城市发展的破坏,湿地逐渐减少。在本研究中,我们考虑了温度和赤霉素酸处理对羊草种子萌发的影响,以提高该物种的保护效果。采用恒温和交变温度处理(60个条件)研究了最佳发芽温度。此外,用赤霉素(GA3)处理以克服生理休眠。测定发芽率(GP, %)和达到50%最大发芽率所需天数(T50)。最适温度为7°C / 23°C: GP为95%,T50为15 d。在40 mg L-1以上浓度下,GA3处理使羊草种子的GP由28%提高到94%,T50由14.6天降低到6.3天。经GA3处理后,根的生长受到延迟或抑制。为了使中华小茴香种子萌发,需要≥15℃的昼夜温差。
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引用次数: 2
The effect of seed priming on the germination properties of Aruncus dioicus 引种对黄穗槐发芽特性的影响
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.2.05
Si-Hong Kim, Su-Yeon Lee, J. Heo
The effects of calcium chloride (CaCl2) and polyethylene glycol (PEG) seed priming on the germination properties of Aruncus dioicus (A. dioicus), an important wild vegetable obtained from forests in Korea, were investigated. The examined factors consisted of three priming concentrations and durations. Our results clearly showed that the germination properties of A. dioicus were affected by the priming conditions. Generally, seed priming with PEG resulted in a higher germination percentage, energy, rate, and time to achieve 50% germination (T50) compared to control and seed priming with CaCl2. Among the experimental conditions used for this study, pre-treatment with PEG at −1.03 MPa for 24 hours resulted in the highest germination percentage, which was 1.9-fold higher than that of the control. Significantly higher germination energy and lower T50 values were also observed compared to those of the control. These results suggest that specific PEG priming conditions can be successfully used to improve the germination properties of A. dioicus.
研究了氯化钙(CaCl2)和聚乙二醇(PEG)对韩国重要野生蔬菜黄豆(Aruncus dioicus, A. dioicus)萌发特性的影响。检查的因素包括三个启动浓度和持续时间。结果表明,萌发条件对菊苣的萌发特性有一定的影响。一般来说,与对照和CaCl2种子激发相比,PEG种子激发的萌发率、能量、率和达到50%发芽率(T50)的时间都更高。在本研究的实验条件中,在−1.03 MPa条件下用PEG预处理24小时,发芽率最高,是对照的1.9倍。与对照相比,萌发能显著提高,T50值显著降低。这些结果表明,特定的PEG启动条件可以成功地提高菊苣的萌发性能。
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引用次数: 0
Book Review: Advances in Seed Science and Technology for More Sustainable Crop Production 书评:促进可持续作物生产的种子科学技术进展
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.3.11
Michael Sussman
As early as 23,000 years ago, we as a human society cultivated the land by growing proto weeds: Poa (Snir et al., 2015). Although it is not known if that practice was any more sustainable than current farming and crop production practices with respect to biodiversity, preserving soils and the environment, and feeding all of us, it is important to note the evidence in this book of practices that embrace and are improving sustainability in the present (Buitink and Leprince, 2022). In Advances in Seed Science and Technology for More Sustainable Crop Production, Buitink and Leprince have collected the works of notable authors to establish a higher understanding of seed quality, germination and dormancy, not to mention how seeds for both crop plants and weeds behave when in the soil or stored for future use.
早在23000年前,我们作为一个人类社会就通过种植原始杂草Poa来耕种土地(Snir et al., 2015)。虽然在生物多样性、保护土壤和环境以及养活我们所有人方面,这种做法是否比当前的农业和作物生产做法更具可持续性尚不清楚,但重要的是要注意本书中有关实践的证据,这些实践支持并正在改善当前的可持续性(Buitink和Leprince, 2022)。在《促进作物可持续生产的种子科学技术进展》一书中,Buitink和Leprince收集了著名作者的作品,以建立对种子质量、发芽和休眠的更高理解,更不用说作物和杂草的种子在土壤中或储存以备将来使用时的表现。
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引用次数: 0
Invited Review: Use of the tetrazolium test for estimating the physiological quality of seeds 特邀综述:四氮唑试验在种子生理品质评价中的应用
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.1.s.03
J. França-Neto, F. C. Krzyzanowski
The tetrazolium test has been developed and improved since the early years of the 20th century. Hundreds of seed specialists have dedicated their efforts for perfecting the methodology of the test for several species. Among these seeds experts, two of them deserve special recognition, Dr. Georg Lakon and Dr. Robert P. Moore, whose achievements had fundamental importance for the further development of the test. The test relies on the activity of certain dehydrogenase enzymes and indirectly measures the respiration capability of the living tissues of the seeds. The initial objective of the test was to quickly determine seed viability. Later on, it focussed on estimating seed vigour and more recently in diagnosing the possible causes that contribute to reduce the physiological quality of seed lots, such as mechanical damage, weathering damage and insect problems. Nowadays, the methodology of the tetrazolium test has been perfected for seeds of several species, including agricultural, vegetable, horticultural, flower, tree and shrub species. Seed quality control is improved with the use of the tetrazolium test in all phases of seed production such as harvesting, receiving, before and after seed processing and drying, during storage and before sowing. The test can be applied even before harvesting the crop. The methods for determining vigour will be briefly presented for seeds of the following species: cotton, common bean, maize, soybean, wheat, sunflower, peanut, Solanaceae, and tropical forage grass seeds. The utilisation of tetrazolium results, as with any vigour test, can assist the categorisation of vigour levels for different seed lots and for estimating the performance of these lots in the field under optimum and stressful conditions.
自20世纪初以来,四氮唑试验得到了发展和改进。数百名种子专家致力于完善几个物种的测试方法。在这些种子专家中,有两位值得特别表彰,他们是乔治·拉孔博士和罗伯特·摩尔博士,他们的成就对进一步发展这项试验具有根本的重要性。该试验依靠某些脱氢酶的活性,间接测量种子活组织的呼吸能力。该试验的最初目的是快速确定种子的生存能力。后来,它集中于估计种子活力,最近则集中于诊断导致种子生理质量下降的可能原因,如机械损伤、风化损伤和昆虫问题。目前,对农业、蔬菜、园艺、花卉、乔木和灌木等多种植物种子的四氮唑检测方法已趋于完善。在种子生产的所有阶段,如收获、接收、种子加工前后和干燥、储存期间和播种前,使用四氮唑试验可以改善种子质量控制。这种测试甚至可以在收获作物之前进行。本文将简要介绍以下几种种子的活力测定方法:棉花、蚕豆、玉米、大豆、小麦、向日葵、花生、茄科植物和热带牧草种子。利用tetrazolium的结果,与任何活力测试一样,可以帮助对不同种子批次的活力水平进行分类,并估计这些批次在最佳和压力条件下的田间表现。
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引用次数: 7
Evaluation of dormancy breaking treatments for enhanced germination in Cotinus coggygria, Cornus mas and Viburnum lantana seeds 破休眠处理对山茱萸、山茱萸和紫荚苋种子萌发促进作用的评价
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.3.03
R. Moghimifam, A. R. Haghighi
Cotinus coggygria, Cornus mas and Viburnum lantana are among the most important species in Arasbaran forests in Northwest Iran. This study was carried out to determine which pre-treatments should be used to overcome dormancy of the seeds. Pre-treatments applied to the Cotinus coggygria seeds were submersion in concentrated (98%) sulphuric acid for 5, 10 and 30 minutes and cold stratification for 30, 60 and 90 days. Maximum germination (80%) was observed following submersion in concentrated (98%) sulphuric acid for 90 minutes and then cold stratification for 90 days. Increasing the concentration of exogenous gibberellin to 200 ppm improved germination of Cornus mas seeds to 85%; the effect of cold stratification was limited, with 57.5-60% germination after both 45 and 90 days stratification. Laboratory temperature followed by stratification was applied to Viburnum lantana seeds. The stratification did not significantly affect the germination. Laboratory temperature had a significant effect on breaking seed dormancy and promoted germination up to 70% with no cold treatment.
Cotinus coggygria, Cornus mas和Viburnum lantana是伊朗西北部Arasbaran森林中最重要的物种。本研究旨在确定应采用何种预处理来克服种子的休眠。前处理方法为:在98%浓硫酸中浸泡5、10、30分钟,冷分层30、60、90天。在浓硫酸(98%)中浸泡90分钟,然后冷分层90天,最高发芽率为80%。将外源赤霉素浓度提高到200 ppm,山茱萸种子的发芽率提高到85%;冷分层的效果有限,45和90 d的发芽率均为57.5-60%。对紫花荚种子进行实验室温度后分层处理。分层对种子萌发无显著影响。实验室温度对打破种子休眠有显著影响,在不进行冷处理的情况下,种子发芽率可达70%。
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引用次数: 0
Determination of hybrid-seed genetic purity in wax gourd using newly developed InDel markers based on whole-genome resequencing 基于全基因组重测序新开发的InDel标记测定冬瓜杂交种遗传纯度
IF 1.4 4区 农林科学 Q2 AGRONOMY Pub Date : 2022-01-01 DOI: 10.15258/sst.2022.50.2.10
Haixuan Lv, Liwen Su, Wenting Wu, Xiaochun Huang, Ting Liu, Lifeng Nong, Wenrui Yang, Yong Chen, Peng Wang, Zhengguo Liu
Wax gourd (Benincasa hispida) is highly appreciated for its nutritional and therapeutic value, especially throughout Asia. As the market for wax gourd expands, new varieties of unknown purity are being promoted. In this study, the unpublished ‘GX-19’ wax gourd genome elucidated by our research group was used as reference genome. Two high-generation inbred lines (‘HX-1’ and ‘HX-6’) were resequenced and 330 pairs of InDel primers were designed and synthesised. Following screening, 11 pairs of InDel markers were identified and used to determine the degree of genetic purity of wax-gourd hybrid seeds. InDel molecular markers were used to identify the purity of 17 hybrids, including ‘Lvxianzi 2’, ‘Fenxianzi 1’, ‘Jinyuan 1’, ‘Yinyuan 4’, ‘Chunfeng 868’, ‘Xinjinyu’ and ‘Meihua 8’. Additionally, we showed that the amplification fragment from DNA extracted using the alkali rapid-extraction method developed in this study was identical to that of the fragment amplified from DNA extracted using a modified CTAB method. When the InDel molecular marker-based purity determination of five wax gourd hybrids was compared with that using the growing out test, the results were highly consistent. A stable, accurate, efficient and straightforward approach is provided to determine the genetic purity of hybrid wax gourd seeds.
冬瓜(Benincasa hispida)因其营养和治疗价值而受到高度赞赏,特别是在亚洲。随着冬瓜市场的扩大,纯度未知的新品种正在推广。本研究以课题组未发表的‘GX-19’冬瓜基因组为参考基因组。对高代自交系‘HX-1’和‘HX-6’进行了测序,设计并合成了330对InDel引物。经筛选,鉴定出11对InDel标记,用于测定冬瓜杂交种子的遗传纯度。利用InDel分子标记对绿仙子2号、汾仙子1号、金源1号、银源4号、春风868、新金玉、梅花8号等17个杂交种进行了纯度鉴定。此外,我们发现用碱快速提取法提取的DNA扩增片段与用改良的CTAB法提取的DNA扩增片段完全相同。将基于InDel分子标记的5个冬瓜杂交种纯度测定方法与生长试验方法进行比较,结果高度一致。为冬瓜杂交种子遗传纯度的测定提供了一种稳定、准确、高效、简便的方法。
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引用次数: 1
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Seed Science and Technology
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