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Multiscale pangenome graphs empower the genomic dissection of mixed-ploidy sugarcane species 多尺度泛基因组图谱使混合倍性甘蔗物种的基因组解剖成为可能
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.adx1616
Yumin Huang, Yixing Zhang, Qing Zhang, Gui Zhuang, Chunjia Li, Baiyu Wang, Ruiting Gao, Yi Xu, Yiying Qi, Xiuting Hua, Huihong Shi, Qiutao Xu, Wei Yao, Xinlong Liu, Yongwen Qi, Baoshan Chen, Muqing Zhang, Ray Ming, Haibao Tang, Jisen Zhang
The sugarcane genus Saccharum is characterized by complex genomes with diverse ploidy levels. We developed a multiscale graph–based pangenome representation, which integrates nine genome assemblies into a unified reference, representing modern cultivars and founding species. Each homo(eo)logous (encompasses both homologous and homeologous relationships) chromosome set retains 47 to 57 haplotypes and ~74,000 to 271,000 gene alleles. This framework enables multiomics exploration, encompassing homo(eo)log systems and epigenomic signatures. The pangenome facilitates population genomics analyses of 417 mixed-ploidy Saccharum accessions, revealing convergent selection and identifying the Andropogoneae TB1 homolog linked to tillering as a promising gene-editing target to boost cane yield. Additionally, the pangenome supports dosage-informed genome-wide association study, improving heritability estimates and identification of sugar or leaf-angle–associated loci, including SaIRX10 and SaBAK5. Our analytical framework establishes a foundation for graph-based genetic studies in sugarcane and other polyploid genomes.
甘蔗属Saccharum具有复杂的基因组和不同的倍性水平。我们开发了一个基于多尺度图的泛基因组表示,将9个基因组组装成一个统一的参考,代表现代栽培品种和创始物种。每个同源(包括同源和同源关系)染色体组保留47至57个单倍型和约74,000至271,000个基因等位基因。该框架使多组学探索,包括人(eo)日志系统和表观基因组特征。该泛基因组有助于对417个混合倍性甘蔗材料进行群体基因组学分析,揭示了趋同选择,并确定了与分蘖相关的Andropogoneae TB1同源物是提高甘蔗产量的有希望的基因编辑靶点。此外,泛基因组支持剂量信息全基因组关联研究,提高遗传力估计和鉴定糖或叶角相关位点,包括SaIRX10和SaBAK5。我们的分析框架为甘蔗和其他多倍体基因组的图谱遗传研究奠定了基础。
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引用次数: 0
Blocking RAN translation without altering repeat RNAs rescues C9ORF72-related ALS and FTD phenotypes 阻断RAN翻译而不改变重复rna可挽救与c9orf72相关的ALS和FTD表型
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.adv2600
Xin Jiang, Laure Schaeffer, Divya Patni, Tommaso Russo, Chao-Zong Lee, Corey Aguilar, Christine Marques, Karen Jansen-West, Marian Hruska-Plochan, Ananya Ray-Soni, Su Min Lim, Aaron Held, Mei Yue, Paula Castellanos Otero, Sandeep Aryal, Hortense D. A. M. Beaussant, Himanish Basu, Hiro Takakuwa, Lillian M. Daughrity, Nandini Ramesh, Paulo Da Costa, Ana Rita A. A. Quadros, Matthew Nolan, Charles Jourdan F. Reyes, Hayden Wheeler, Laura C. Moran, Grant Griesman, Benjamin Wymann, Bianca A. Trombetta, Emma Sofia Lopez-De-Silanes, Michael Canori, Gopinath Krishnan, Yasmim Vieira Souza Da Silva, Gilbert Eriani, Mark W. Albers, Steven E. Arnold, Yuyu Song, Ankur Jain, Isaac M. Chiu, Yong-Jie Zhang, Fen-Biao Gao, Brian J. Wainger, Magdalini Polymenidou, Leonard Petrucelli, Franck Martin, Clotilde Lagier-Tourenne
GGGGCC (G4C2) repeat expansion in C9ORF72 is the most common genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Toxicity is thought to result from the accumulation of either repeat RNAs and/or dipeptide repeat proteins (DPRs) translated from repeat-containing transcripts through repeat-associated non-AUG (RAN) translation. To disentangle RNA from DPR toxicity, we mutated a CUG codon predominantly used to initiate DPR translation from all three reading frames. This mutation disrupted DPR synthesis while preserving the expression of repeat-containing RNAs. Despite the accumulation of RNA foci, behavioral deficits and pathological abnormalities, including p-TDP-43 inclusions, STING activation, motor neuron loss, neuroinflammation, and increased plasma neurofilament concentration, were alleviated in C9ORF72 mice. Base editing of the CUG codon also improved molecular phenotypes and survival in patient induced pluripotent stem cell–derived neurons, which highlights the potential of therapeutically targeting DPR production rather than repeat RNAs.
C9ORF72中GGGGCC (G4C2)重复扩增是肌萎缩侧索硬化症(ALS)和额颞叶痴呆(FTD)最常见的遗传原因。毒性被认为是由于重复rna和/或二肽重复蛋白(DPRs)的积累,这些重复rna和/或二肽重复蛋白(DPRs)是通过重复相关的非aug (RAN)翻译从含有重复的转录物中翻译出来的。为了从DPR毒性中分离RNA,我们突变了一个主要用于从所有三个阅读框启动DPR翻译的CUG密码子。这种突变破坏了DPR的合成,同时保留了含有重复序列的rna的表达。尽管RNA病灶积累,但C9ORF72小鼠的行为缺陷和病理异常,包括p-TDP-43内含物、STING激活、运动神经元丢失、神经炎症和血浆神经丝浓度升高,均得到缓解。CUG密码子的碱基编辑也改善了患者诱导的多能干细胞衍生神经元的分子表型和存活,这突出了治疗靶向DPR产生而不是重复rna的潜力。
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引用次数: 0
Why methane surged in the atmosphere during the early 2020s 为什么甲烷在本世纪20年代初在大气中激增
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.adx8262
P. Ciais, Y. Zhu, Y. Cai, X. Lan, S. E. Michel, B. Zheng, Y. Zhao, D. A. Hauglustaine, X. Lin, Y. Zhang, S. Sun, X. Tian, M. Zhao, Y. Wang, J. Chang, X. Dou, Z. Liu, R. Andrew, C. A. Quinn, B. Poulter, Z. Ouyang, W. Yuan, K. Yuan, Q. Zhu, F. Li, N. Pan, H. Tian, X. Yu, G. Rocher-Ros, M. S. Johnson, M. Li, M. Li, D. Feng, P. Raymond, X. Yang, J. G. Canadell, R. B. Jackson, X. Yu, Y. Li, M. Saunois, P. Bousquet, S. Peng
The atmospheric methane (CH4) growth rate surged after 2019, peaking at 16.2 parts per billion per year (ppb year−1) in 2020 before declining to 8.6 ppb year−1 in 2023. Using multiple atmospheric inversions constrained by observation- and model-based prescribed hydroxyl radical (OH) fields and CH4 atmospheric data, we show that a drop of OH radicals in 2020–2021, followed by recovery in 2022–2023, accounted for 83% of year-on-year variations in the CH4 growth rate, the rest being explained by wetland and inland water emissions, which increased between 2019 and 2020–2022 [+8.6 ± 2.6 teragrams of CH4 per year (TgCH4 year−1)] and then decreased between 2022 and 2023 (−9.9 ± 3.3 TgCH4 year−1). Most emission changes from 2019 to 2023 occurred in northern tropical wetlands in Africa and Asia, whereas South American wetlands emissions declined and Arctic emissions increased after 2019.
大气甲烷(CH4)的增长率在2019年之后激增,在2020年达到每年16.2 ppb的峰值,然后在2023年下降到每年8.6 ppb。利用基于观测和模型的规定羟基自由基(OH)场和CH4大气数据约束的多次大气逆变,我们发现,2020-2021年OH自由基下降,随后在2022-2023年恢复,占CH4增长率同比变化的83%,其余部分由湿地和内陆水排放解释。在2019年至2020-2022年期间增加[+8.6±2.6兆克/年(TgCH4年−1)],然后在2022年至2023年期间减少(−9.9±3.3兆克/年)。2019年至2023年的大部分排放变化发生在非洲和亚洲的北部热带湿地,而南美湿地的排放量在2019年之后下降,北极的排放量增加。
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引用次数: 0
A double helix twist in HIV vaccine design HIV疫苗设计中的双螺旋扭曲
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.aee5778
Oliver Bannard, Mark R. Howarth
DNA, the genetic material of life, is being increasingly appreciated as a nanoscale building material. Being programmable, rigid, and highly soluble, DNA can be designed to self-assemble into a vast range of architectures. These properties underpin the field of DNA origami, in which a long single-stranded DNA scaffold is folded into programmed shapes by oligonucleotides that connect different parts of the scaffold (1). On page 574 of this issue, Romanov et al. (2) demonstrate that DNA origami can be used to display human immunodeficiency virus (HIV) protein antigens. When given to mice, these nanoparticles elicited antibody responses that may pave the way for broadly protective immunity against infection. This approach could lead to more effective HIV vaccines.
DNA,生命的遗传物质,作为一种纳米级建筑材料正日益受到重视。由于可编程、刚性和高度可溶性,DNA可以被设计成自组装成各种各样的体系结构。这些特性是DNA折纸领域的基础,在这个领域中,一个长单链DNA支架通过连接支架不同部分的寡核苷酸折叠成程序形状(1)。在本期的第574页,Romanov等人(2)证明了DNA折纸可以用来展示人类免疫缺陷病毒(HIV)蛋白抗原。当给予小鼠时,这些纳米颗粒引发抗体反应,可能为广泛的保护性免疫感染铺平道路。这种方法可能导致更有效的艾滋病毒疫苗。
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引用次数: 0
What is causing the methane surge? 是什么导致了甲烷的激增?
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.aee6226
Euan G. Nisbet, Martin R. Manning
This year marks the 250th anniversary of the discovery of methane by Alessandro Volta. The continuing presence of this gas in the atmosphere was determined in 1948 (1), yet its atmospheric budget—an accounting of all methane entering and leaving the air—is still not well understood. Methane is the second most prevalent anthropogenic greenhouse gas contributing to climate change. Following sustained strong annual growth around 5 to 10 parts per billion (ppb) in atmospheric abundance (2), the years 2020 to 2022 brought the highest growth (~13 to 18 ppb/year) in the observational record (1 ppb represents 2.8 million tonnes of methane). On page 578 of this issue, Ciais et al. (3) report the causes of the surge, including a decline in the self-cleansing power of the atmosphere coupled with rising biogenic emissions. The findings have implications for developing targeting strategies to mitigate methane emission.
今年是亚历山德罗·沃尔特发现甲烷250周年。这种气体在大气中的持续存在是在1948年确定的(1),然而它的大气收支——对所有进入和离开空气的甲烷的计算——仍然没有得到很好的理解。甲烷是导致气候变化的第二大人为温室气体。在大气丰度持续强劲的年增长(5 - 10 ppb)之后(2),2020 - 2022年实现了观测记录中最高的增长(约13 - 18 ppb/年)(1 ppb代表280万吨甲烷)。在本期杂志的第578页,Ciais等人(3)报告了这一激增的原因,包括大气自我清洁能力的下降以及生物排放的增加。这些发现对制定减少甲烷排放的目标策略具有重要意义。
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引用次数: 0
Lawmakers spend big on home state science projects. 立法者在本州的科学项目上投入了大量资金。
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.aeg1219
Jeffrey Mervis

Kentucky Senator Mitch McConnell, king of congressional earmarks, steers $165 million to his alma maters.

肯塔基州参议员米奇·麦康奈尔,国会专项拨款之王,向他的母校捐赠了1.65亿美元。
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引用次数: 0
Attendance drops at some U.S. conferences, but others hold steady. 美国一些会议的出席人数有所下降,但其他会议的出席人数保持稳定。
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.aeg1218
Katie Langin

As the political landscape continues to shift, scientific societies worry about future annual meetings.

随着政治格局的不断变化,科学协会对未来的年度会议感到担忧。
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引用次数: 0
Learning to leave home. 学会离开家。
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.aef9995
Aigerim Karina
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引用次数: 0
DNA origami vaccines program antigen-focused germinal centers DNA折纸疫苗计划抗原聚焦生发中心
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.adx6291
Anna Romanov, Grant A. Knappe, Larance Ronsard, Christopher A. Cottrell, Yiming J. Zhang, Heikyung Suh, Lauren Duhamel, Marjan Omer, Asheley P. Chapman, Katie Spivakovsky, Patrick Skog, Claudia T. Flynn, Jeong Hyun Lee, Oleksandr Kalyuzhniy, Alessia Liguori, Molly F. Parsons, Vanessa R. Lewis, Josue Canales, Boris Reizis, Ryan D. Tingle, Torben Schiffner, William R. Schief, Daniel Lingwood, Mark Bathe, Darrell J. Irvine
Priming rare subdominant precursor B cells in germinal centers (GCs) is a central goal of vaccination to generate broadly neutralizing antibodies (bnAbs) against HIV. Multivalent immunogen display on protein nanoparticle scaffolds can promote such responses, but it also generates scaffold-specific B cells that could theoretically limit bnAb precursor expansion in GCs. We rationally designed DNA origami–based virus-like particles (DNA-VLPs) displaying a germline-targeting HIV envelope protein immunogen, which elicited no scaffold-specific antibody responses. Compared with a state-of-the-art clinical protein nanoparticle, these DNA-VLPs increased the expansion of epitope-specific GC B cells relative to off-target B cells and enhanced expansion of bnAb-lineage B cells in a humanized mouse model of CD4 binding site priming. Thus, minimizing off-target responses enhances bnAb priming and indicates that DNA-VLPs are a promising vaccine platform.
在生发中心(GCs)中启动罕见的亚显性前体B细胞是疫苗接种产生广泛中和抗体(bnAbs)的中心目标。在蛋白质纳米颗粒支架上展示多价免疫原可以促进这种反应,但它也会产生支架特异性B细胞,理论上可以限制bnAb前体在GCs中的扩增。我们合理设计了基于DNA折纸的病毒样颗粒(DNA- vlp),显示了一种针对生殖系的HIV包膜蛋白免疫原,该颗粒没有引起支架特异性抗体反应。与最新的临床蛋白纳米颗粒相比,这些DNA-VLPs增加了表位特异性GC B细胞相对于脱靶B细胞的扩增,并且在CD4结合位点启动的人源化小鼠模型中增强了bnab谱系B细胞的扩增。因此,最小化脱靶反应增强了bnAb的启动,表明dna - vlp是一个很有前途的疫苗平台。
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引用次数: 0
Device-independent quantum key distribution over 100 km with single atoms 与设备无关的量子密钥分布超过100公里与单个原子
IF 45.8 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2026-02-05 DOI: 10.1126/science.aec6243
Bo-Wei Lu, Chao-Wei Yang, Run-Qi Wang, Bo-Feng Gao, Yi-Zheng Zhen, Zhen-Gang Wang, Jia-Kai Shi, Zhong-Qi Ren, Thomas A. Hahn, Ernest Y.-Z. Tan, Xiu-Ping Xie, Ming-Yang Zheng, Xiao Jiang, Jun Zhang, Feihu Xu, Qiang Zhang, Xiao-Hui Bao, Jian-Wei Pan
Device-independent quantum key distribution (DI-QKD) is a key application of the quantum internet. We report the realization of DI-QKD between two single-atom nodes linked by 100–kilometer (km) fibers. To improve the entangling rate, single-photon interference is leveraged for entanglement heralding, and quantum frequency conversion is used to reduce fiber loss. A tailored Rydberg-based emission scheme suppresses the photon recoil effect on the atom without introducing noise. We achieved high-fidelity atom-atom entanglement and positive asymptotic key rates for fiber lengths up to 100 km. At 11 km, 1.2 million heralded Bell pairs were prepared over 624 hours, yielding an estimated extractable finite-size secure key rate of 0.112 bits per event against general attacks. Our results close the gap between proof-of-principle quantum network experiments and real-world applications.
与设备无关的量子密钥分发(DI-QKD)是量子互联网的一个关键应用。我们报道了通过100公里光纤连接的两个单原子节点之间的DI-QKD的实现。为了提高纠缠率,利用单光子干涉进行纠缠预警,利用量子频率转换减少光纤损耗。一种定制的基于里德堡的发射方案在不引入噪声的情况下抑制了原子上的光子反冲效应。我们实现了高保真的原子-原子纠缠和正渐近密钥速率,光纤长度可达100公里。在11公里处,在624小时内准备了120万个预示贝尔对,估计每个事件可提取的有限大小安全密钥率为0.112比特,可抵御一般攻击。我们的结果缩小了原理证明量子网络实验与现实世界应用之间的差距。
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引用次数: 0
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