Pub Date : 2024-11-12Epub Date: 2024-10-29DOI: 10.1021/acsnano.4c12460
Amid Shakeri, Lubna Najm, Shadman Khan, Lei Tian, Liane Ladouceur, Hareet Sidhu, Nadine Al-Jabouri, Zeinab Hosseinidoust, Tohid F Didar
Immunofluorescence assays are extensively used for the detection of disease-associated biomarkers within patient samples for direct diagnosis. Unfortunately, these 2D microarrays suffer from low repeatability and fail to attain the low limits of detection (LODs) required to accurately discern disease progression for clinical monitoring. While three-dimensional microarrays with increased biorecognition molecule density stand to circumvent these limitations, their viscous component materials are not compatible with current microarray fabrication protocols. Herein, we introduce a platform for 3D microarray bioprinting, wherein a two-step printing approach enables the high-throughput fabrication of immunosorbent hydrogels. The hydrogels are composed entirely of cross-linked proteins decorated with clinically relevant capture antibodies. Compared to two-dimensional microarrays, these proteinaceous microarrays offer 3-fold increases in signal intensity. When tested with clinically relevant biomarkers, ultrasensitive single-plex and multiplex detection of interleukin-6 (LOD 0.3 pg/mL) and tumor necrosis factor receptor 1 (LOD 1 pg/mL) is observed. When challenged with clinical samples, these hydrogel microarrays consistently discern elevated levels of interleukin-6 in blood plasma derived from patients with systemic blood infections. Given their easy-to-implement, high-throughput fabrication, and ultrasensitive detection, these three-dimensional microarrays will enable better clinical monitoring of disease progression, yielding improved patient outcomes.
{"title":"Noncontact 3D Bioprinting of Proteinaceous Microarrays for Highly Sensitive Immunofluorescence Detection within Clinical Samples.","authors":"Amid Shakeri, Lubna Najm, Shadman Khan, Lei Tian, Liane Ladouceur, Hareet Sidhu, Nadine Al-Jabouri, Zeinab Hosseinidoust, Tohid F Didar","doi":"10.1021/acsnano.4c12460","DOIUrl":"10.1021/acsnano.4c12460","url":null,"abstract":"<p><p>Immunofluorescence assays are extensively used for the detection of disease-associated biomarkers within patient samples for direct diagnosis. Unfortunately, these 2D microarrays suffer from low repeatability and fail to attain the low limits of detection (LODs) required to accurately discern disease progression for clinical monitoring. While three-dimensional microarrays with increased biorecognition molecule density stand to circumvent these limitations, their viscous component materials are not compatible with current microarray fabrication protocols. Herein, we introduce a platform for 3D microarray bioprinting, wherein a two-step printing approach enables the high-throughput fabrication of immunosorbent hydrogels. The hydrogels are composed entirely of cross-linked proteins decorated with clinically relevant capture antibodies. Compared to two-dimensional microarrays, these proteinaceous microarrays offer 3-fold increases in signal intensity. When tested with clinically relevant biomarkers, ultrasensitive single-plex and multiplex detection of interleukin-6 (LOD 0.3 pg/mL) and tumor necrosis factor receptor 1 (LOD 1 pg/mL) is observed. When challenged with clinical samples, these hydrogel microarrays consistently discern elevated levels of interleukin-6 in blood plasma derived from patients with systemic blood infections. Given their easy-to-implement, high-throughput fabrication, and ultrasensitive detection, these three-dimensional microarrays will enable better clinical monitoring of disease progression, yielding improved patient outcomes.</p>","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":" ","pages":"31506-31523"},"PeriodicalIF":15.8,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142520304","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-29DOI: 10.1021/acsnano.4c06253
Tae Gwan Park, Seungil Baek, Junho Park, Eui-Cheol Shin, Hong Ryeol Na, Eon-Taek Oh, Seung-Hyun Chun, Yong-Hyun Kim, Sunghun Lee, Fabian Rotermund
Enabling reversible control over the topological invariants, transitioning them from nontrivial to trivial states, has fundamental implications for quantum information processing and spintronics. It offers a promising avenue for establishing an efficient on/off switch mechanism for robust and dissipationless spin-currents. While mechanical strain has traditionally been advantageous for such manipulation of topological invariants, it often comes with the drawback of in-plane fractures, rendering it unsuitable for high-speed, time-dependent operations. This study employs ultrafast optical and THz spectroscopy to explore topological phase transitions induced by light-driven strain in Bi2Se3. Bi2Se3 requires substantial strain for Z2 switching. Our observations provide experimental evidence of ultrafast switching behavior, demonstrating a transition from a topological insulator with spin-momentum-locked surfaces to hybridized states and normal insulating phases under ambient conditions. Notably, applying light-induced strong out-of-plane strain effectively suppresses surface-bulk coupling, facilitating the differentiation of surface and bulk conductance even at room temperature─significantly surpassing the Debye temperature. We expect various time-dependent sequences of transient hybridization and manipulation of topological invariant through photoexcitation intensity adjustments. The sudden surface and bulk transport alterations near the transition point enable coherent conductance modulation at hypersound frequencies. Our findings on the potential of light-triggered ultrafast switching of topological invariants hold promise for high-speed topological switching and its related applications.
{"title":"Spectroscopic Evidence of Ultrafast Topological Phase Transition by Light-Driven Strain.","authors":"Tae Gwan Park, Seungil Baek, Junho Park, Eui-Cheol Shin, Hong Ryeol Na, Eon-Taek Oh, Seung-Hyun Chun, Yong-Hyun Kim, Sunghun Lee, Fabian Rotermund","doi":"10.1021/acsnano.4c06253","DOIUrl":"10.1021/acsnano.4c06253","url":null,"abstract":"<p><p>Enabling reversible control over the topological invariants, transitioning them from nontrivial to trivial states, has fundamental implications for quantum information processing and spintronics. It offers a promising avenue for establishing an efficient on/off switch mechanism for robust and dissipationless spin-currents. While mechanical strain has traditionally been advantageous for such manipulation of topological invariants, it often comes with the drawback of in-plane fractures, rendering it unsuitable for high-speed, time-dependent operations. This study employs ultrafast optical and THz spectroscopy to explore topological phase transitions induced by light-driven strain in Bi<sub>2</sub>Se<sub>3</sub>. Bi<sub>2</sub>Se<sub>3</sub> requires substantial strain for Z<sub>2</sub> switching. Our observations provide experimental evidence of ultrafast switching behavior, demonstrating a transition from a topological insulator with spin-momentum-locked surfaces to hybridized states and normal insulating phases under ambient conditions. Notably, applying light-induced strong out-of-plane strain effectively suppresses surface-bulk coupling, facilitating the differentiation of surface and bulk conductance even at room temperature─significantly surpassing the Debye temperature. We expect various time-dependent sequences of transient hybridization and manipulation of topological invariant through photoexcitation intensity adjustments. The sudden surface and bulk transport alterations near the transition point enable coherent conductance modulation at hypersound frequencies. Our findings on the potential of light-triggered ultrafast switching of topological invariants hold promise for high-speed topological switching and its related applications.</p>","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":" ","pages":"30966-30977"},"PeriodicalIF":15.8,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142520305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Benjamin Pestka, Jeff Strasdas, Gustav Bihlmayer, Adam Krzysztof Budniak, Marcus Liebmann, Niklas Leuth, Honey Boban, Vitaliy Feyer, Iulia Cojocariu, Daniel Baranowski, Simone Mearini, Yaron Amouyal, Lutz Waldecker, Bernd Beschoten, Christoph Stampfer, Lukasz Plucinski, Efrat Lifshitz, Peter Kratzer, Markus Morgenstern
Magnetic 2D materials enable interesting tuning options of magnetism. As an example, the van der Waals material FePS3, a zig-zag-type intralayer antiferromagnet, exhibits very strong magnetoelastic coupling due to the different bond lengths along different ferromagnetic and antiferromagnetic coupling directions enabling elastic tuning of magnetic properties. The likely cause of the length change is the intricate competition between direct exchange of the Fe atoms and superexchange via the S and P atoms. To elucidate this interplay, we study the band structure of exfoliated FePS3 by μm scale ARPES (angular resolved photoelectron spectroscopy), both, above and below the Néel temperature TN. We found three characteristic changes across TN. They involve S 3p-type bands, Fe 3d-type bands and P 3p-type bands, respectively, as attributed by comparison with density functional theory calculations (DFT + U). This highlights the involvement of all the atoms in the magnetic phase transition providing independent evidence for the intricate exchange paths.
二维磁性材料可以实现有趣的磁性调整选项。例如,范德瓦耳斯材料 FePS3 是一种人字形层内反铁磁体,由于沿着不同的铁磁和反铁磁耦合方向存在不同的键长,因此表现出非常强的磁弹性耦合,从而实现了磁性能的弹性调整。长度变化的可能原因是铁原子的直接交换与通过 S 原子和 P 原子进行的超交换之间错综复杂的竞争。为了阐明这种相互作用,我们通过微米尺度的角分辨光电子能谱(ARPES)研究了剥离的 FePS3 在高于和低于奈尔温度 TN 时的能带结构。我们发现在 TN 温度范围内有三个特征性变化。根据与密度泛函理论计算(DFT + U)的比较,它们分别涉及 S 3p 型带、Fe 3d 型带和 P 3p 型带。这表明所有原子都参与了磁性相变,为错综复杂的交换路径提供了独立证据。
{"title":"Identifying Band Structure Changes of FePS3 across the Antiferromagnetic Phase Transition","authors":"Benjamin Pestka, Jeff Strasdas, Gustav Bihlmayer, Adam Krzysztof Budniak, Marcus Liebmann, Niklas Leuth, Honey Boban, Vitaliy Feyer, Iulia Cojocariu, Daniel Baranowski, Simone Mearini, Yaron Amouyal, Lutz Waldecker, Bernd Beschoten, Christoph Stampfer, Lukasz Plucinski, Efrat Lifshitz, Peter Kratzer, Markus Morgenstern","doi":"10.1021/acsnano.4c12520","DOIUrl":"https://doi.org/10.1021/acsnano.4c12520","url":null,"abstract":"Magnetic 2D materials enable interesting tuning options of magnetism. As an example, the van der Waals material FePS<sub>3</sub>, a zig-zag-type intralayer antiferromagnet, exhibits very strong magnetoelastic coupling due to the different bond lengths along different ferromagnetic and antiferromagnetic coupling directions enabling elastic tuning of magnetic properties. The likely cause of the length change is the intricate competition between direct exchange of the Fe atoms and superexchange via the S and P atoms. To elucidate this interplay, we study the band structure of exfoliated FePS<sub>3</sub> by μm scale ARPES (angular resolved photoelectron spectroscopy), both, above and below the Néel temperature <i>T</i><sub>N</sub>. We found three characteristic changes across <i>T</i><sub>N</sub>. They involve S 3<i>p</i>-type bands, Fe 3<i>d</i>-type bands and P 3<i>p</i>-type bands, respectively, as attributed by comparison with density functional theory calculations (DFT + U). This highlights the involvement of all the atoms in the magnetic phase transition providing independent evidence for the intricate exchange paths.","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":"1 1","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142599836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Zheng Zhang, Hongye Luo, Xinyuan Zhang, Run Yang, Shili Yan, Qing Yang, Jun Yang
Spray-induced gene silencing (SIGS) presents a promising RNA interference (RNAi)-based crop protection strategy against eukaryotic phytopathogens. However, the application of SIGS faces challenges, such as the limited uptake of dsRNA by certain pathogens and the instability of dsRNA in the environment. This study introduces innovative biomimetic nanovesicles, called extracellular vesicle (EV) mimetic chimeric nanovesicles (ECNs), assembled from tomato leaf cell membranes and cationic sterosomes via the freeze–thaw method. Similar to the function of EVs in nucleic acid transport between cells, ECNs serve as a hybrid nanosystem to overcome the challenge of delivering exogenous dsRNA in Phytophthora infestans. When applied to SIGS, the superiority of ECNs in crop protection becomes more apparent, including high loading and protection of dsRNA, improved biosafety, and efficient internalization into pathogen and plant cells, all of which significantly enhance the efficacy of RNAi in preventing early infection of P. infestans to susceptible tomato plants. This study demonstrates that ECNs are promising RNA delivery vehicles and will promote the use of SIGS-based RNA pesticides in sustainable agricultural production.
{"title":"Extracellular Vesicles Mimetic Design of Membrane Chimeric Nanovesicles for dsRNA Delivery in Spray-Induced Gene Silencing for Crop Protection","authors":"Zheng Zhang, Hongye Luo, Xinyuan Zhang, Run Yang, Shili Yan, Qing Yang, Jun Yang","doi":"10.1021/acsnano.4c06282","DOIUrl":"https://doi.org/10.1021/acsnano.4c06282","url":null,"abstract":"Spray-induced gene silencing (SIGS) presents a promising RNA interference (RNAi)-based crop protection strategy against eukaryotic phytopathogens. However, the application of SIGS faces challenges, such as the limited uptake of dsRNA by certain pathogens and the instability of dsRNA in the environment. This study introduces innovative biomimetic nanovesicles, called extracellular vesicle (EV) mimetic chimeric nanovesicles (ECNs), assembled from tomato leaf cell membranes and cationic sterosomes via the freeze–thaw method. Similar to the function of EVs in nucleic acid transport between cells, ECNs serve as a hybrid nanosystem to overcome the challenge of delivering exogenous dsRNA in <i>Phytophthora infestans</i>. When applied to SIGS, the superiority of ECNs in crop protection becomes more apparent, including high loading and protection of dsRNA, improved biosafety, and efficient internalization into pathogen and plant cells, all of which significantly enhance the efficacy of RNAi in preventing early infection of <i>P. infestans</i> to susceptible tomato plants. This study demonstrates that ECNs are promising RNA delivery vehicles and will promote the use of SIGS-based RNA pesticides in sustainable agricultural production.","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":"71 1","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142599683","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The serious dissolution of organic electrode materials (e.g., perylene-3,4,9,10-tetracarboxylic dianhydride, PTCDA) in electrolytes is a major challenge, deteriorating their electrochemical performances and hindering the interpretation of the fundamental redox reaction mechanisms including the intrinsic kinetics and the solvent cointercalation. To address these issues, we propose a rationally designed sulfonamide-based electrolyte to enable a quasi-solid-state conversion (QSSC) of the PTCDA cathode by effectively suppressing its dissolution in the electrolyte. Benefiting from the QSSC, the Li||PTCDA cells can retain ∼95.8% of the original capacity after 300 cycles with both high and stable energy efficiencies >95%, even comparable to the layered transition-metal oxide cathodes, greatly outperforming an ether-based electrolyte with a high PTCDA solubility. The high energy efficiencies indicate that the QSSC of PTCDA has intrinsic fast redox kinetics. Furthermore, the solvent cointercalation mechanism was investigated by density functional theory/molecular dynamic calculations. This work develops a strategy for designing electrolytes for highly stable and efficient Li–organic batteries.
{"title":"Quasi-Solid-State Conversion with Fast Redox Kinetics Enabled by a Sulfonamide-Based Electrolyte in Li–Organic Batteries","authors":"Huang Cai, Xinke Cui, Yonghao Shi, Yuxin Zhang, Xinran Chen, Linghan Fan, Jian Zhou, Chuanjin Tian, Weijiang Xue","doi":"10.1021/acsnano.4c10343","DOIUrl":"https://doi.org/10.1021/acsnano.4c10343","url":null,"abstract":"The serious dissolution of organic electrode materials (e.g., perylene-3,4,9,10-tetracarboxylic dianhydride, PTCDA) in electrolytes is a major challenge, deteriorating their electrochemical performances and hindering the interpretation of the fundamental redox reaction mechanisms including the intrinsic kinetics and the solvent cointercalation. To address these issues, we propose a rationally designed sulfonamide-based electrolyte to enable a quasi-solid-state conversion (QSSC) of the PTCDA cathode by effectively suppressing its dissolution in the electrolyte. Benefiting from the QSSC, the Li||PTCDA cells can retain ∼95.8% of the original capacity after 300 cycles with both high and stable energy efficiencies >95%, even comparable to the layered transition-metal oxide cathodes, greatly outperforming an ether-based electrolyte with a high PTCDA solubility. The high energy efficiencies indicate that the QSSC of PTCDA has intrinsic fast redox kinetics. Furthermore, the solvent cointercalation mechanism was investigated by density functional theory/molecular dynamic calculations. This work develops a strategy for designing electrolytes for highly stable and efficient Li–organic batteries.","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":"40 1","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142601578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dark exciton states show great potential in condensed matter physics and optoelectronics because of their long lifetime and rich distribution in band structures. Therefore, they can theoretically serve as efficient energy reservoirs, providing a platform for future applications. However, their optical-transition-forbidden nature severely limits their experimental exploration and hinders their current application. Here, we demonstrate a universal dark state nonlinear energy transfer (ET) mechanism in monolayer WS2/CsPbBr3 van der Waals heterostructures under two-photon excitation, which successfully utilizes the enormous energy reserved in the dark exciton state of CsPbBr3 to significantly improve the photoelectric performance of monolayer WS2. We first propose the scenario of resonant ET between the dark state of CsPbBr3 and WS2, and then reveal that this is a typical Förster resonant ET and belongs to the 2D-2D category. Interestingly, the dark state ET in CsPbBr3 is identified as a long-range donor-bridge-acceptor hopping mode, with a potential distance exceeding 200 nm. Finally, we successfully achieve nearly an order of magnitude enhancement in the near-infrared detection performance of monolayer WS2. Our results enrich the theory of dark exciton states and ET, and they provide a way of using dark exciton states for future practical applications.
{"title":"Efficient Energy Transfer Enabled by Dark States in van der Waals Heterostructures.","authors":"Ziyu Luo, Xiao Yi, Ying Jiang, Nannan Luo, Bingjie Liu, Yangguang Zhong, Qin Tan, Qi Jiang, Xinfeng Liu, Shula Chen, Yuerui Lu, Anlian Pan","doi":"10.1021/acsnano.4c09403","DOIUrl":"10.1021/acsnano.4c09403","url":null,"abstract":"<p><p>Dark exciton states show great potential in condensed matter physics and optoelectronics because of their long lifetime and rich distribution in band structures. Therefore, they can theoretically serve as efficient energy reservoirs, providing a platform for future applications. However, their optical-transition-forbidden nature severely limits their experimental exploration and hinders their current application. Here, we demonstrate a universal dark state nonlinear energy transfer (ET) mechanism in monolayer WS<sub>2</sub>/CsPbBr<sub>3</sub> van der Waals heterostructures under two-photon excitation, which successfully utilizes the enormous energy reserved in the dark exciton state of CsPbBr<sub>3</sub> to significantly improve the photoelectric performance of monolayer WS<sub>2</sub>. We first propose the scenario of resonant ET between the dark state of CsPbBr<sub>3</sub> and WS<sub>2</sub>, and then reveal that this is a typical Förster resonant ET and belongs to the 2D-2D category. Interestingly, the dark state ET in CsPbBr<sub>3</sub> is identified as a long-range donor-bridge-acceptor hopping mode, with a potential distance exceeding 200 nm. Finally, we successfully achieve nearly an order of magnitude enhancement in the near-infrared detection performance of monolayer WS<sub>2</sub>. Our results enrich the theory of dark exciton states and ET, and they provide a way of using dark exciton states for future practical applications.</p>","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":" ","pages":"31215-31224"},"PeriodicalIF":15.8,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142520303","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-31DOI: 10.1021/acsnano.4c11436
Minju Ryu, Sohee Oh, Ki-Baek Jeong, Sungbo Hwang, Jin-Sik Kim, Minji Chung, Seung-Wook Chi
Modulating protein-protein interactions (PPIs) is an attractive strategy in drug discovery. Molecular glues, bifunctional small-molecule drugs that promote PPIs, offer an approach to targeting traditionally undruggable targets. However, the efficient discovery of molecular glues has been hampered by the current limitations of conventional ensemble-averaging-based methods. In this study, we present a YaxAB nanopore for probing the efficacy of molecular glues in inducing PPIs. Using YaxAB nanopores, we demonstrate single-molecule-based, label-free monitoring of protein complex formation between mammalian target of rapamycin (mTOR) and FK506-binding proteins (FKBPs) triggered by the molecular glue, rapamycin. Owing to its wide entrance and adjustable pore size, in combination with potent electro-osmotic flow (EOF), a single funnel-shaped YaxAB nanopore enables the simultaneous detection and single-molecule-level quantification of multiprotein states, including single proteins, binary complexes, and ternary complexes induced by rapamycin. Notably, YaxAB nanopores could sensitively discriminate between the binary complexes or ternary complexes induced by rapamycin and its analogues, despite the subtle size differences of ∼122 or ∼116 Da, respectively. Taken together, our results provide proof-of-concept for single-molecule-based, label-free, and ultrasensitive screening and structure-activity relationship (SAR) analysis of molecular glues, which will contribute to low-cost, highly efficient discovery, and rational design of bifunctional modality of drugs, such as molecular glues.
{"title":"Single-Molecule-Based, Label-Free Monitoring of Molecular Glue Efficacies for Promoting Protein-Protein Interactions Using YaxAB Nanopores.","authors":"Minju Ryu, Sohee Oh, Ki-Baek Jeong, Sungbo Hwang, Jin-Sik Kim, Minji Chung, Seung-Wook Chi","doi":"10.1021/acsnano.4c11436","DOIUrl":"10.1021/acsnano.4c11436","url":null,"abstract":"<p><p>Modulating protein-protein interactions (PPIs) is an attractive strategy in drug discovery. Molecular glues, bifunctional small-molecule drugs that promote PPIs, offer an approach to targeting traditionally undruggable targets. However, the efficient discovery of molecular glues has been hampered by the current limitations of conventional ensemble-averaging-based methods. In this study, we present a YaxAB nanopore for probing the efficacy of molecular glues in inducing PPIs. Using YaxAB nanopores, we demonstrate single-molecule-based, label-free monitoring of protein complex formation between mammalian target of rapamycin (mTOR) and FK506-binding proteins (FKBPs) triggered by the molecular glue, rapamycin. Owing to its wide entrance and adjustable pore size, in combination with potent electro-osmotic flow (EOF), a single funnel-shaped YaxAB nanopore enables the simultaneous detection and single-molecule-level quantification of multiprotein states, including single proteins, binary complexes, and ternary complexes induced by rapamycin. Notably, YaxAB nanopores could sensitively discriminate between the binary complexes or ternary complexes induced by rapamycin and its analogues, despite the subtle size differences of ∼122 or ∼116 Da, respectively. Taken together, our results provide proof-of-concept for single-molecule-based, label-free, and ultrasensitive screening and structure-activity relationship (SAR) analysis of molecular glues, which will contribute to low-cost, highly efficient discovery, and rational design of bifunctional modality of drugs, such as molecular glues.</p>","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":" ","pages":"31451-31465"},"PeriodicalIF":2.9,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11562796/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142556574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biomaterials synthesized from cross-linked folded proteins have untapped potential for biocompatible, resilient, and responsive implementations, but face challenges due to costly molecular refinement and limited understanding of their mechanical response. Under a stress vector, these materials combine the gel-like response of cross-linked networks with the mechanical unfolding and extension of proteins from well-defined 3D structures to unstructured polypeptides. Yet the nanoscale dynamics governing their viscoelastic response remains poorly understood. This lack of understanding is further exacerbated by the fact that the mechanical stability of protein domains depends not only on their structure, but also on the direction of the force vector. To this end, here we propose a coarse-grained network model based on the physical characteristics of polyproteins and combine it with the mechanical unfolding response of protein domains, obtained from single molecule measurements and steered molecular dynamics simulations, to explain the macroscopic response of protein-based materials to a stress vector. We find that domains are about 10-fold more stable when force is applied along their end-to-end coordinate than along the other tethering geometries that are possible inside the biomaterial. As such, the macroscopic response of protein-based materials is mainly driven by the unfolding of the node-domains and rearrangement of these nodes inside the material. The predictions from our models are then confirmed experimentally using force-clamp rheometry. This model is a critical step toward developing protein-based materials with predictable response and that can enable applications for shape memory and energy storage and dissipation.
{"title":"Mechanical Unfolding of Network Nodes Drives the Stress Response of Protein-Based Materials.","authors":"Joel Nowitzke, Sanam Bista, Sadia Raman, Narayan Dahal, Guillaume Stirnemann, Ionel Popa","doi":"10.1021/acsnano.4c07352","DOIUrl":"10.1021/acsnano.4c07352","url":null,"abstract":"<p><p>Biomaterials synthesized from cross-linked folded proteins have untapped potential for biocompatible, resilient, and responsive implementations, but face challenges due to costly molecular refinement and limited understanding of their mechanical response. Under a stress vector, these materials combine the gel-like response of cross-linked networks with the mechanical unfolding and extension of proteins from well-defined 3D structures to unstructured polypeptides. Yet the nanoscale dynamics governing their viscoelastic response remains poorly understood. This lack of understanding is further exacerbated by the fact that the mechanical stability of protein domains depends not only on their structure, but also on the direction of the force vector. To this end, here we propose a coarse-grained network model based on the physical characteristics of polyproteins and combine it with the mechanical unfolding response of protein domains, obtained from single molecule measurements and steered molecular dynamics simulations, to explain the macroscopic response of protein-based materials to a stress vector. We find that domains are about 10-fold more stable when force is applied along their end-to-end coordinate than along the other tethering geometries that are possible inside the biomaterial. As such, the macroscopic response of protein-based materials is mainly driven by the unfolding of the node-domains and rearrangement of these nodes inside the material. The predictions from our models are then confirmed experimentally using force-clamp rheometry. This model is a critical step toward developing protein-based materials with predictable response and that can enable applications for shape memory and energy storage and dissipation.</p>","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":" ","pages":"31031-31043"},"PeriodicalIF":15.8,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142563520","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Da-Jie Yang, Jing-Yi Wang, Ye-Qi Zhang, Qu-Quan Wang
Understanding the interaction between light and chiral nanostructures is of fundamental importance, yet the principles governing chiral interactions have remained largely phenomenological. In this work, we present a chiral field-mode (FM) matching model to quantify the circular dichroism (CD) and helical dichroism (HD) of chiral plasmonic nanostructures interacting with beams of different spin–orbit states. The chiral FM matching model posits that among the inherent resonance modes within the nanostructure, the most efficiently excited mode is the one that matches the external field structure by possessing one more node along the vibration direction, with the field structure itself being determined by the interaction between the geometric phase and dynamic phase through a Doppler-like effect. The geometric phase in this model is well-defined by the product of the winding angle of the nanohelix and the angular momenta of light, including both its spin and orbital components. Thus, the beams of different spin–orbit states excite the specific resonance mode possessing one more node compared with the field structure, resulting in the spin-related CD and orbit-related HD. This model is extended to various chiral nanocomplexes, demonstrating how the field structure determines mode excitation and offering a comprehensive explanation for the CD and HD observed in various experimental setups. This model offers insights into the CD and HD microscopy in chiral nanostructures, contributing to the advancement of the fundamental theory of chiral nanophotonics.
理解光与手性纳米结构之间的相互作用具有根本性的重要意义,然而手性相互作用的原理在很大程度上仍然是现象学的。在这项工作中,我们提出了一种手性场模式(FM)匹配模型,用于量化手性质子纳米结构与不同自旋轨道态光束相互作用时的圆二色性(CD)和螺旋二色性(HD)。手性调频匹配模型认为,在纳米结构内部的固有共振模式中,最有效的激发模式是通过沿振动方向多一个节点来匹配外部场结构的模式,而场结构本身是由几何相位和动态相位之间通过类似多普勒效应的相互作用决定的。该模型中的几何相位由纳米螺旋的缠绕角与光的角矩(包括其自旋和轨道分量)的乘积明确定义。因此,不同自旋轨道态的光束会激发特定的共振模式,该模式比场结构多一个节点,从而产生与自旋相关的 CD 和与轨道相关的 HD。该模型扩展到了各种手性纳米复合物,展示了场结构如何决定模式激发,并为在各种实验装置中观察到的 CD 和 HD 提供了全面的解释。该模型深入揭示了手性纳米结构中的 CD 和 HD 微观现象,有助于推动手性纳米光子学基础理论的发展。
{"title":"Interplay between Dynamic Phase and Geometric Phase Determines the Circular Dichroism and Helical Dichroism","authors":"Da-Jie Yang, Jing-Yi Wang, Ye-Qi Zhang, Qu-Quan Wang","doi":"10.1021/acsnano.4c11720","DOIUrl":"https://doi.org/10.1021/acsnano.4c11720","url":null,"abstract":"Understanding the interaction between light and chiral nanostructures is of fundamental importance, yet the principles governing chiral interactions have remained largely phenomenological. In this work, we present a chiral field-mode (FM) matching model to quantify the circular dichroism (CD) and helical dichroism (HD) of chiral plasmonic nanostructures interacting with beams of different spin–orbit states. The chiral FM matching model posits that among the inherent resonance modes within the nanostructure, the most efficiently excited mode is the one that matches the external field structure by possessing one more node along the vibration direction, with the field structure itself being determined by the interaction between the geometric phase and dynamic phase through a Doppler-like effect. The geometric phase in this model is well-defined by the product of the winding angle of the nanohelix and the angular momenta of light, including both its spin and orbital components. Thus, the beams of different spin–orbit states excite the specific resonance mode possessing one more node compared with the field structure, resulting in the spin-related CD and orbit-related HD. This model is extended to various chiral nanocomplexes, demonstrating how the field structure determines mode excitation and offering a comprehensive explanation for the CD and HD observed in various experimental setups. This model offers insights into the CD and HD microscopy in chiral nanostructures, contributing to the advancement of the fundamental theory of chiral nanophotonics.","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":"18 1","pages":""},"PeriodicalIF":17.1,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142601579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-12Epub Date: 2024-10-31DOI: 10.1021/acsnano.4c10912
Yingying Cai, Swagato Sarkar, Yuwen Peng, Tobias A F König, Philipp Vana
Plasmonic molecules (PMs) composed of polymer-capped nanoparticles represent an emerging material class with precise optical functionalities. However, achieving controlled structural changes in metallic nanoparticle aggregation at the nanoscale, similar to the modification of atomic structures, remains challenging. This study demonstrates the 2D/3D isomerization of such plasmonic molecules induced by a controlled ultrasound process. We used two types of gold nanoparticles, each functionalized with hydrogen bonding (HB) donor or acceptor polymers, to self-assemble into different ABN-type complexes via interparticle polymer bundles acting as molecular bonds. Post-ultrasonication treatment significantly shortens these bonds from approximately 14 to 2 nm by enhancing HB cross-linking within the bundles. This drastic change in the bond length increases the stiffness of the resulting clusters, facilitating the transition from 2D to 3D configurations in 100% yield during drop-casting onto substrates. Our results advance the precise control of PMs' nanoarchitectures and provide insights for their broad applications in sensing, optoelectronics, and metamaterials.
{"title":"Ultrasonic Control of Polymer-Capped Plasmonic Molecules.","authors":"Yingying Cai, Swagato Sarkar, Yuwen Peng, Tobias A F König, Philipp Vana","doi":"10.1021/acsnano.4c10912","DOIUrl":"10.1021/acsnano.4c10912","url":null,"abstract":"<p><p>Plasmonic molecules (PMs) composed of polymer-capped nanoparticles represent an emerging material class with precise optical functionalities. However, achieving controlled structural changes in metallic nanoparticle aggregation at the nanoscale, similar to the modification of atomic structures, remains challenging. This study demonstrates the 2D/3D isomerization of such plasmonic molecules induced by a controlled ultrasound process. We used two types of gold nanoparticles, each functionalized with hydrogen bonding (HB) donor or acceptor polymers, to self-assemble into different AB<sub><i>N</i></sub>-type complexes via interparticle polymer bundles acting as molecular bonds. Post-ultrasonication treatment significantly shortens these bonds from approximately 14 to 2 nm by enhancing HB cross-linking within the bundles. This drastic change in the bond length increases the stiffness of the resulting clusters, facilitating the transition from 2D to 3D configurations in 100% yield during drop-casting onto substrates. Our results advance the precise control of PMs' nanoarchitectures and provide insights for their broad applications in sensing, optoelectronics, and metamaterials.</p>","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":" ","pages":"31360-31371"},"PeriodicalIF":2.9,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11562790/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142542790","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}