Systematic Entomology最新文献

The twisted-winged parasite genus Stylops has a history of different species concepts with varying host specificity resulting in diverse species diversity estimates in different regions of the Holarctic. The adoption of a supergeneralist species concept in Europe, proposing synonymization of all Western Palaearctic Stylops species, did not facilitate taxonomic clarity and obscured the available life-history data in the region for decades. Lack of molecular data has allowed divergent opinions on species hypotheses and little opportunity for evaluating them in this morphologically challenging genus. To solve these discrepancies and gain novel information about host associations, we applied whole-genome sequencing to 163 specimens, representing a significant portion of putative European species. We evaluate the existing and conflicting species hypotheses with molecular species delimitation using Species bOundry Delimitation using Astral (SODA) and use a maximum likelihood phylogeny to investigate host associations of the species. Furthermore, we evaluate the effect of a number of loci used in SODA for the number of inferred species. We find justification for synonymization of multiple species and indications of undescribed species, as well as new host–parasite relationships. We show that the number of inferred species in SODA is exceedingly and positively correlated with the number of loci used, urging for cautious application. The results of our study bring clarity to the Western Palaearctic species diversity of Stylops. Furthermore, the comprehensive molecular dataset generated in this study will be a valuable resource for future studies on Stylops and the evolution of parasites in general.

The transformation of the fore wings into strongly sclerotized protective covers (elytra) is considered a fundamental evolutionary innovation of the megadiverse order Coleoptera. Surprisingly, these multifunctional structures have been reduced in many distantly related groups of beetles. Patterns, drivers and the evolutionary implications of this modification have never been comprehensively discussed. In the present study, we surveyed the entire order Coleoptera to analyse the patterns of elytral shortening and loss, with a special focus on prevalence, forms, degree of reduction and the functional background of this significant deviation from the coleopteran ground plan. Our analysis revealed that about 20% of all extant species (roughly 88,000 out of 442,275 spp.), distributed across all four suborders, have shortened or even absent elytra. The elytral loss was more frequent within the polyphagan series Elateriformia and Staphyliniformia. Moreover, we found that elytral reduction has independently occurred multiple times in the evolutionary history of Coleoptera and that it has been driven by a wide array of selective drivers. One of the main drivers is the improved flexibility of the uncovered abdomen and the correlated increased manoeuvrability in narrow spaces, as well as the option of using the flexible abdomen as a steering organ or to facilitate mating. Another common driver is mimicry, where exposed metathoracic wings potentially improve the overall similarity to hymenopteran models. Exposure of the abdomen can facilitate the targeted release of defensive abdominal gland secretions and was most likely a crucial step towards establishing relations with social insects enhanced by chemical communication. In the Elateriformia, and rarely in other lineages, elytral loss is a consequence of paedomorphosis, related to a specific resource-allocation strategy. In many groups of beetles with reduced elytra, alternative defensive strategies can be found. This includes, for instance, aposematic coloration, chemical defence, mimicry or bioluminescence. Direct drivers of elytral loss in many groups remain unclear, and more studies are needed to understand the evolutionary background and implications of this significant morphological modification in Coleoptera.

The Oriental fruit fly Bactrocera dorsalis (Hendel), a global pest that can decimate regional fruit industries and elicit international quarantines, has been the subject of considerable taxonomic confusion. Previous phylogenetic work revealed that B. dorsalis is part of a monophyletic clade containing 12 species. We present restriction site-associated DNA sequencing (RAD-seq) genomic data for 2,292 specimens, which unequivocally supports the delimitation of two new species, here described as Bactrocera borneoensis sp. n. Doorenweerd & San Jose and B. incognita sp. n. Doorenweerd & San Jose. We additionally obtained 1,985 Cytochrome C oxidase I (COI) sequences for a subset of the specimens to see which species can be diagnosed with this mtDNA marker and conclude that B. dorsalis, B. incognita, B. carambolae Drew & Hancock, B. raiensis Drew & Hancock, B. occipitalis (Bezzi) and B. kandiensis Drew & Hancock cannot be identified reliably using COI due to introgression—but the newly described species B. borneoensis can be identified using COI. The supposed innocuous species B. raiensis distribution is underestimated in Asia and Africa. Bactrocera kandiensis COI genotypes occur in African flies, but RAD-seq data confirm that these are B. dorsalis with introgressed B. kandiensis COI. The phylogenomic dataset brings new light to the extent of the B. dorsalis s.l. clade and the morphological and molecular confusion based on COI. This will have ramifications for ecological data—including host and distribution ranges—associated with B. dorsalis s.l. clade species, pest identification protocols and our understanding of the economic importance of the various species in the clade.

We analyse anchored hybrid enrichment data from densely sampled tribes and subfamilies of Notodontidae (Prominent Moths). Notodontidae are monophyletic except for an assemblage of genera related to Thacona Walker (=Scrancia Holland), which had been recognized at either the tribal or subfamilial rank within Notodontidae. We elevate and re-describe Scranciidae stat. nov. as a family distinct from the six currently recognized noctuoid families (Noctuidae, Erebidae, Euteliidae, Nolidae, Notodontidae and Oenosandridae). Scranciidae include 22 genera comprising approximately 100 species—distributed in Africa, Asia and Australia. We re-interpret morphological synapomorphies previously proposed for Notodontidae (including Scranciidae) and for the trifid Noctuoidea more broadly. Deep-level relationships within Noctuoidea are not well resolved outside the clade comprising the four quadrifid families (Noctuidae, Erebidae, Euteliidae and Nolidae). The phylogenetic position of Scranciidae relative to Notodontidae, Oenosandridae and the quadrifids varied markedly depending on data type (amino acid vs. nucleotide) and analytical framework (maximum likelihood, multi-species coalescent and parsimony). We discuss the possible roles of missing data and short branch lengths in resolving the placement of Scranciidae. In the topology best supported by the most available data, Scranciidae are sister to the remaining Noctuoidea, highlighting their phylogenetic significance. We provide a provisional list of the genera included in Scranciidae.

The complex and dynamic history of the Anatolian Peninsula during the Pleistocene set the stage for species diversification. However, the evolutionary history of biodiversity in the region is shrouded by the challenges of studying species divergence in the recent, dynamic past. Here, we study the Poecilimon bosphoricus (PB) species group to understand how the bush crickets' diversification and the regions' complex history are coupled. Specifically, using sequences of two mitochondrial and two nuclear gene segments from over 500 individuals for a comprehensive set of taxa with extensive geographic sampling, we infer the phylogenetic and geographic setting of species divergence. In addition, we use the molecular data to examine hypothesized species boundaries that were defined morphologically. Our analyses of the timing of divergence confirm the recent origin of the PB complex, indicating its diversification coincided with the dynamic geology and climate of the Pleistocene. Moreover, the geography of divergence suggests a history of fragmentation followed by admixture of populations, suggestive of a ring species. However, the evolutionary history based on genetic divergence conflicts with morphologically defined species boundaries raising the prospects that incipient species divergences may be relatively ephemeral. As such, the morphological differences observed in the PB complex may not to be sufficient to have prevented homogenizing gene flow in the past. Alternatively, with the recent origin of the complex, the lack of time for lineage sorting may underlie the discord between morphological species boundaries and genetic differentiation. Under either hypothesis, geography—not taxonomy—is the best predictor of genetic divergence.

Rapid species radiations present difficulties for phylogenetic reconstruction due to lack of phylogenetic information and processes such as deep coalescence/incomplete lineage sorting and hybridization. Phylogenomic data can overcome some of these difficulties. In this study, we use anchored hybrid enrichment (AHE) nuclear phylogenomic data and mitochondrial genomes recovered from AHE bycatch with several concatenated and coalescent approaches to reconstruct the poorly resolved radiation of the New Zealand cicada species in the genera Kikihia Dugdale and Maoricicada Dugdale. Compared with previous studies using only three to five Sanger-sequenced genes, we find increased resolution across our phylogenies, but several branches remain unresolved due to topological conflict among genes. Some nodes that are strongly supported by traditional support measures like bootstraps and posterior probabilities still show significant gene and site concordance conflict. In addition, we find strong mito-nuclear discordance; likely the result of interspecific hybridization events in the evolutionary history of Kikihia and Maoricicada.

The genus Chanohirata Hayashi & Machida, including the herein synonymized monotypic genus Reticuluma Cheng & Li, is the second most speciose genus in the tribe Penthimiini after Penthimia Germar and is almost exclusively endemic to China. This study presents the first phylogeny of Chanohirata based on three mitochondrial markers (cytochrome c oxidase subunit I and II and 16S ribosomal RNA) and one nuclear fragment (28S ribosomal RNA). Reticuluma syn. n. is recovered nested within Chanohirata with strong support. Reticuluma is, therefore, proposed as a junior synonym of Chanohirata, and a new combination is proposed: Chanohirata citrana (Cheng & Li) comb. n. Molecular species delimitation analyses were conducted by combining six molecular delimitation methods with morphological evidence. The results of the species delimitation analyses confirm the status of eight described species of Chanohirata and support the recognition of three new species: Chanohirata cornicula Wang & Zhang sp. n., Chanohirata elongata Wang & Zhang sp. n. and Chanohirata serrata Wang & Zhang sp. n. Molecular dating and biogeographic analyses suggest that Chanohirata likely originated during the late Eocene in southern China. During the late Miocene to early Pleistocene, the uplift of the Himalayas and Tibetan Plateau and climatic oscillations probably triggered several dispersal and vicariance events in Chanohirata lineages, leading to most speciation events.

Representatives of the cockroach superfamily Corydioidea are less sampled than members of the two other cockroach superfamilies (Blaberoidea and Blattoidea) due to the difficulty of collecting them in the field, accentuated by a general lack of knowledge on their biology. Their evolutionary relationships have not yet been investigated with a relevant sampling and are therefore poorly known. Here, we assess the phylogenetic relationships of 35 Corydioidea species with mitochondrial genomes and two nuclear gene fragments. Our sampling for Corydiidae comprises Corydiinae and Euthyrrhaphinae representatives, whereas our sampling for the remaining Corydioidea includes species belonging to genera Beybienkonus Qiu, Wang and Che, Compsodes Hebard, Ctenoneura Hanitsch and Nocticola Bolívar. We further infer their divergence times with molecular dating analyses relying on five fossil calibrations. We also carry out reconstructions of ancestral character states for 11 phenotypic and one biological traits. Our results recover two major Corydioidea clades, one consisting solely of Corydiidae (except Latindiinae) and the other of all remaining Corydioidea taxa. Based on the results of phylogenetic analyses, an updated classification of extant Corydioidea is proposed, where Latindiinae Handlirsch stat.rev. and Ctenoneurinae Qiu and Che, subfam.nov. are assigned to the family Nocticolidae Bolívar sensu nov. A new genus Pseudoeupolyphaga Qiu and Che, gen.nov. is also established within Corydiinae. Both the origin of crown Corydioidea and the divergence of the two major lineages are estimated to have occurred during the Triassic–Jurassic boundary. Ancestral character state reconstruction analyses also suggest an adaptive relationship between phenotypic characteristics and habitat preferences.

The Miltogramminae (Diptera: Sarcophagidae) includes ~600 species across >40 genera, which constitute ~20% of global Sarcophagidae. While molecular phylogenetic hypotheses have been produced for this group, critical problems persist, including the presence of paraphyletic genera, uncertain relationships between genera, a bias of sampling towards Palaearctic taxa, and low support for many branches. The present study remedies these issues through the application of Anchored Hybrid Enrichment (AHE) to a sample including ~60% of the currently recognised genera (16% of known species) representing all biogeographic regions except the Neotropical. An alignment of 1,281 concatenated loci was analysed with maximum likelihood (RAxML, IQ-TREE), Bayesian inference (ExaBayes) and coalescent-based approaches (ASTRAL, SVDquartets), which resulted in highly supported and concordant topologies, providing unprecedented insight into the relationships of this subfamily of flesh flies, allowing a major update to miltogrammine classification. The AHE phylogenetic hypothesis supports the monophyly of a large proportion of genera. The monophyly of Metopia Meigen is restored by synonymy with Aenigmetopia Malloch, syn.n. To achieve monophyly of Miltogramma Meigen, eight species are transferred from Pterella Robineau-Desvoidy. The genus Pterella is shown to be paraphyletic in its current circumscription, and to restore generic monophyly Pterella is restricted to contain only Pt. grisea (Meigen). Erioprocta Enderlein, stat.rev., is resurrected. The genus Senotainia Macquart is reconstructed as paraphyletic. The monotypic genus Metopodia Brauer & Bergenstamm is synonymised with Taxigramma Macquart, syn.n. In light of our phylogenetic hypotheses, a new Miltogramminae tribal classification is proposed, composed of six tribes.

Gall wasps (Hymenoptera: Cynipidae) comprise 13 distinct tribes whose interrelationships remain incompletely understood. Recent analyses of ultra-conserved elements (UCEs) represent the first attempt at resolving these relationships using phylogenomics. Here, we present the first analysis based on protein-coding sequences from genome and transcriptome assemblies. Unlike UCEs, these data allow more sophisticated substitution models, which can potentially resolve issues with long-branch attraction. We include data for 37 cynipoid species, including two tribes missing in the UCE analysis: Aylacini (s. str.) and Qwaqwaiini. Our results confirm the UCE result that Cynipidae are not monophyletic. Specifically, the Paraulacini and Diplolepidini + Pediaspidini fall outside a core clade (Cynipidae s. str.), which is more closely related to the insect-parasitic Figitidae, and this result is robust to the exclusion of long-branch taxa that could mislead the analysis. Given this, we here divide the Cynipidae into three families: the Paraulacidae stat. prom., Diplolepididae stat. prom. and Cynipidae (s. str.). Our results suggest that the Eschatocerini are the sister group of the remaining Cynipidae (s. str.). Within the Cynipidae (s. str.), the Aylacini (s. str.) are more closely related to oak gall wasps (Cynipini) and some of their inquilines (Ceroptresini) than to other herb gallers (Aulacideini and Phanacidini), and the Qwaqwaiini likely form a clade together with Synergini (s. str.) and Rhoophilini. Several alternative scenarios for the evolution of cynipid life histories are compatible with the relationships suggested by our analysis, but all are complex and require multiple shifts among parasitoids, inquilines and gall inducers.