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Phylogenomic analysis of protein-coding genes resolves complex gall wasp relationships 蛋白质编码基因的系统进化分析解析了复杂的五倍子蜂关系
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-10-03 DOI: 10.1111/syen.12611
Jack Hearn, Erik Gobbo, José Luis Nieves-Aldrey, Antoine Branca, James A. Nicholls, Georgios Koutsovoulos, Nicolas Lartillot, Graham N. Stone, Fredrik Ronquist

Gall wasps (Hymenoptera: Cynipidae) comprise 13 distinct tribes whose interrelationships remain incompletely understood. Recent analyses of ultra-conserved elements (UCEs) represent the first attempt at resolving these relationships using phylogenomics. Here, we present the first analysis based on protein-coding sequences from genome and transcriptome assemblies. Unlike UCEs, these data allow more sophisticated substitution models, which can potentially resolve issues with long-branch attraction. We include data for 37 cynipoid species, including two tribes missing in the UCE analysis: Aylacini (s. str.) and Qwaqwaiini. Our results confirm the UCE result that Cynipidae are not monophyletic. Specifically, the Paraulacini and Diplolepidini + Pediaspidini fall outside a core clade (Cynipidae s. str.), which is more closely related to the insect-parasitic Figitidae, and this result is robust to the exclusion of long-branch taxa that could mislead the analysis. Given this, we here divide the Cynipidae into three families: the Paraulacidae stat. prom., Diplolepididae stat. prom. and Cynipidae (s. str.). Our results suggest that the Eschatocerini are the sister group of the remaining Cynipidae (s. str.). Within the Cynipidae (s. str.), the Aylacini (s. str.) are more closely related to oak gall wasps (Cynipini) and some of their inquilines (Ceroptresini) than to other herb gallers (Aulacideini and Phanacidini), and the Qwaqwaiini likely form a clade together with Synergini (s. str.) and Rhoophilini. Several alternative scenarios for the evolution of cynipid life histories are compatible with the relationships suggested by our analysis, but all are complex and require multiple shifts among parasitoids, inquilines and gall inducers.

瘿蜂(膜翅目:瘿蜂科)由 13 个不同的支系组成,它们之间的相互关系仍然不完全清楚。最近对超保守元素(UCEs)的分析是利用系统发生组学解决这些关系的首次尝试。在这里,我们首次基于基因组和转录组组装的蛋白质编码序列进行了分析。与 UCE 不同,这些数据可以建立更复杂的替代模型,从而有可能解决长分支吸引的问题。我们纳入了 37 个犬齿目物种的数据,其中包括两个在 UCE 分析中缺失的部族:Aylacini (s. str.) 和 Qwaqwaiini。我们的结果证实了 UCE 的结果,即鲤形目(Cynipidae)不是单系的。具体地说,Paraulacini 和 Diplolepidini + Pediaspidini 位于核心支系(Cynipidae s. str.)之外,与昆虫寄生的 Figitidae 关系更为密切。有鉴于此,我们在此将鲤科(Cynipidae)分为三科:Paraulacidae stat.我们的研究结果表明,Eschatocerini 是其余 Cynipidae(s. str.)的姊妹群。在Cynipidae(s. str.)中,Aylacini(s. str.)与橡树瘿蜂(Cynipini)及其一些内喙蜂(Ceroptresini)的亲缘关系比与其他草本瘿蜂(Aulacideini和Phanacidini)的亲缘关系更近,Qwaqwaiini可能与Synergini(s. str.)和Rhoophilini组成一个支系。鹤虱生活史进化的几种替代方案与我们的分析所提出的关系是一致的,但所有方案都很复杂,需要寄生虫、绻虫和虫瘿诱导体之间的多重转变。
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引用次数: 0
Phylogeny of the Braconinae (Hymenoptera: Braconidae): A new tribal order! 腕足动物的系统发育(膜翅目:腕足动物):A new tribal order!
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-09-12 DOI: 10.1111/syen.12608
Donald L. J. Quicke, Jovana M. Jasso-Martínez, A. P. Ranjith, Michael J. Sharkey, Ramya Manjunath, Suresh Naik, Paul D. N. Hebert, Dharma Rajan Priyadarsanan, Jessa Thurman, Buntika A. Butcher

Generic relationships within the parasitoid wasp subfamily Braconinae are assessed based on a molecular phylogenetic analysis of four gene fragments: mitochondrial cytochrome c oxidase subunit I, 16S rDNA, nuclear 28S D2-D3 rDNA and elongation factor 1-alpha. Our results support the recognition of Aphrastobraconini, Braconini and Coeloidini plus three new tribes: Compsobraconini tribus nov., Tropobraconini tribus nov. and Virgulibraconini tribus nov. The first of these new tribes is restricted to the New World; the second includes the Old World genera Tropobracon Cameron, Trispinaria Quicke and Grangerbracon Samartsev and Belokobylskij and possibly others, whereas the third comprises the Australian genus Virgulibracon Quicke, plus several other described and undescribed Australian genera. Consistent placement of Amyosoma Viereck with members of the Virgulibraconini tribus nov. is discussed, whereas Amyosoma is left currently unplaced. A preliminary key to tribes is presented, and the characters used to differentiate between Aphrastobraconini and Braconini are revised. Megacoeloides Quicke was never recovered with Coeloides, the type genus of Coeloidini, so it is treated as Braconinae incertae sedis. By combining molecular and morphological traits, nearly all valid genera are assigned to tribes, and the possible relationships of the remainder are discussed. Alienoclypeus Shenefelt, 1978 is synonymised with Atanycolus Förster, 1862 (Atanycolus insolitus (Shenefelt) comb. nov.). Several new genera have been revealed and will be described elsewhere.

基于线粒体细胞色素 c 氧化酶亚单位 I、16S rDNA、核 28S D2-D3 rDNA 和伸长因子 1-α 四个基因片段的分子系统学分析,评估了寄生蜂亚科 Braconinae 内的类属关系。我们的研究结果支持对 Aphrastobraconini、Braconini 和 Coeloidini 以及三个新支系的确认:Compsobraconini tribus nov.、Tropobraconini tribus nov.和 Virgulibraconini tribus nov.。其中第一个新支系仅限于新世界;第二个支系包括旧世界的 Tropobracon Cameron 属、Trispinaria Quicke 属和 Grangerbracon Samartsev 和 Belokobylskij 属,可能还有其它属;第三个支系包括澳大利亚的 Virgulibracon Quicke 属,以及其它几个已描述和未描述的澳大利亚属。讨论了 Amyosoma Viereck 与 Virgulibraconini tribus nov.成员的一致归属,而 Amyosoma 目前尚未归属。提出了一个初步的部落检索表,并修订了用于区分 Aphrastobraconini 和 Braconini 的特征。Megacoeloides Quicke从未与鳗鲡科的模式属Coeloides一起被发现,因此将其作为Braconinae的现生属处理。通过结合分子和形态特征,几乎所有有效属都被归入了部,并讨论了其余属的可能关系。Alienoclypeus Shenefelt, 1978 与 Atanycolus Förster, 1862(Atanycolus insolitus (Shenefelt) comb.)发现了几个新属,并将在其他地方进行描述。
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引用次数: 0
Mitochondrial phylogenetics position a new Afrotropical termite species into its own subfamily, the Engelitermitinae (Blattodea: Termitidae) 线粒体系统发育学将一种新的非洲白蚁物种定位到自己的亚科Engelitermitinae中(Blattodea:白蚁科)
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-08-17 DOI: 10.1111/syen.12607
Johanna Romero Arias, Simon Hellemans, Esra Kaymak, Pierre D. Akama, Thomas Bourguignon, Yves Roisin, Rudolf H. Scheffrahn, Jan Šobotník

While new species of termites are described every year, the description of species distant from every known termite species is rare. In this paper, we describe one such species, Engelitermes zambo sp.n., an African Termitidae belonging to an entirely new lineage of termites for which we create a new subfamily, Engelitermitinae subfam.n. The subfamily status of Engelitermitinae was supported by termite phylogenetic trees, including sequences from the four existing samples of E. zambo sp.n., which, albeit with low bootstrap supports, placed Engelitermes gen.n. on a long branch sister to Forficulitermes, the two of which formed the sister group of a clade comprising Cubitermitinae, Nasutitermitinae, Syntermitinae and all other Termitinae. The sister relationship between Engelitermes gen.n. and Forficulitermes is further supported by the similar gut structure of their workers. In contrast, the soldiers of Engelitermes gen.n. resemble those of Cephalotermes. Our phylogenetic analyses, including all clades of Termitinae, call for a global taxonomic revision of the Termitinae subfamily names. Finally, our study highlights that new unique termite lineages are still awaiting to be described.

虽然每年都有新的白蚁物种被描述,但与每一种已知白蚁物种相距甚远的物种描述却很少见。在本文中,我们描述了一个这样的物种,Engelitermes zambo sp.n,这是一个非洲白蚁科,属于一个全新的白蚁谱系,我们为其创建了一个新的亚科,Engelitelitinae亚科。Engelitelmininae的亚科地位得到了白蚁系统发育树的支持,包括来自E.zambo sp.n的四个现有样本的序列,尽管具有较低的自举支持,但将Engelitermes gen.n.放在Forficulitermes的一个长分支姐妹上,这两个分支形成了一个分支的姐妹群,该分支包括Cubitermitinae、Nasutitermtinae、Syntermtinae和所有其他Termitinae。Engelitermes gen.n.和Forficulitermes之间的姐妹关系进一步得到了其工人相似肠道结构的支持。相比之下,Engelitermes gen.的士兵与Cephalotermes的士兵相似。我们的系统发育分析,包括白蚁亚科的所有分支,呼吁对白蚁亚科名称进行全球分类修订。最后,我们的研究强调,新的独特白蚁谱系仍有待描述。
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引用次数: 0
Saprininae: Phylogeny, biogeography and a new classification of the subfamily (Coleoptera: Histeridae) Saprininae:系统发育、生物地理学和亚科的一个新分类(鞘翅目:组翅科)
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-08-07 DOI: 10.1111/syen.12606
Tomáš Lackner, Yuanmeng Miles Zhang, Carolin Kindler, Michal Motyka, Michael Balke
<p>With 74 genera and subgenera and approximately 740 species, Saprininae represent one of the largest subfamilies of Histeridae (Coleoptera: Histeroidea). Here, we present a phylogenetic hypothesis for Saprininae based on comprehensive taxonomic sampling. This is the first phylogenetic study combining molecular and morphological approaches (cytochrome <i>c</i> oxidase subunit 1, 18S ribosomal RNA and 93 morphological characters). As a result, we propose a new classification; five new tribes are erected: <b>Myrmetini</b> Portevin <b>stat. and sens. nov.</b>; <b>Euspilotini</b> Lackner, <b>trib. nov.</b>; <b>Eremosaprinini</b> Lackner, <b>trib. nov.</b>; <b>Saprinini</b> Blanchard, <b>sens. nov.</b>; and <b>Hypocaccini</b> Lackner, <b>trib. nov</b>. Additional nomenclatural acts are as follows: <i>Chelyoxenus</i> Hubbard is downgraded to a subgenus of <i>Geomysaprinus</i> Ross, thus <i>Geomysaprinus</i> (<i>Chelyoxenus</i>) <b>stat. nov.</b>, <i>Nessus</i> Reichardt is transferred from a subgenus of <i>Hypocaccus</i> C. Thomson to a subgenus of <i>Hypocacculus</i> Bickhardt, thus <i>Hypocacculus</i> (<i>Nessus</i>) <b>stat. rest.</b> The following taxa <i>Paraphilothis</i> Vienna, <i>Styphrus</i> Motschulsky, <i>Xerosaprinus</i> Wenzel, <i>Lophobregmus</i> Wenzel, <i>Vastosaprinus</i> Wenzel, <i>Auchmosaprinus</i> Wenzel, <i>Hemisaprinus</i> Kryzhanovskij & Reichardt, <i>Reichardtia</i> Wenzel and <i>Australopachylopus</i> Lackner & Leschen are all downgraded into subgenera of <i>Saprinus</i> Erichson. Thus, <i>Saprinus</i> (<i>Paraphilothis</i>) <b>stat. nov.</b>, <i>Saprinus</i> (<i>Styphrus</i>) <b>stat. nov.</b>, <i>Saprinus</i> (<i>Xerosaprinus</i>) <b>stat. nov.</b>, <i>Saprinus</i> (<i>Vastosaprinus</i>) <b>stat. nov.</b>, <i>Saprinus</i> (<i>Auchmosaprinus</i>) <b>stat. nov.</b>, <i>Saprinus</i> (<i>Lophobregmus</i>) <b>stat. nov.</b>, <i>Saprinus</i> (<i>Hemisaprinus</i>) <b>stat. rest.</b>, <i>Saprinus</i> (<i>Reichardtia</i>) <b>stat. nov.</b>, <i>Saprinus</i> (<i>Australopachylopus</i>) <b>stat. nov.</b> A new genus, <i>Paraxenus</i> Lackner <b>gen. nov.,</b> is proposed for the former South African and Namibian members of the genus <i>Pholioxenus</i> Reichardt, with the following new combinations: <i>Paraxenus diasi</i> (Vienna) <b>comb. nov.</b>; <i>Paraxenus eremicola</i> (Thérond) <b>comb. nov.</b>; <i>Paraxenus namibiensis</i> (Vienna) <b>comb. nov.</b>; <i>Paraxenus oleolus</i> (Thérond) <b>comb. nov.</b>; <i>Paraxenus therondi</i> (Olexa) <b>comb. nov.</b>; and <i>Paraxenus uhligi</i> (Mazur) <b>comb. nov.</b> Additionally, based on the analysis of the dispersal patterns, <b>Myrmetini</b> appear to be a bipolar (amphitropical) clade, while <b>Eremosaprinini</b> appear to be exclusive to the Western Hemisphere. <b>Euspilotini</b> are strongly represented in the Western Hemisphere, with only a handful of species known from the Palaearctic/Oriental regions. <b>Saprinini</b> and <b>Hypocaccini</b> are spread worldwide but ar
有74个属和亚属,约740种,是蝉科(鞘翅目:蝉总科)中最大的亚科之一。本文在综合分类取样的基础上,提出了一种皂荚亚科的系统发育假说。这是第一个结合分子和形态学方法(细胞色素c氧化酶亚基1,18S核糖体RNA和93个形态学特征)的系统发育研究。因此,我们提出了一种新的分类;五个新的部落建立起来了:Myrmetini Portevin stat.和sens. nov.;乌斯皮罗蒂尼·拉克纳,部落。11月;Eremosaprinini Lackner,部落。11月;萨普里尼尼·布兰查德,11月;和Hypocaccini Lackner部落。11月,其他命名行为如下:Chelyoxenus Hubbard被降为Geomysaprinus Ross的一个亚属,因此Geomysaprinus (Chelyoxenus) stat. 11月,Nessus Reichardt从Hypocaccus C. Thomson的一个亚属转移到Hypocacculus Bickhardt的一个亚属,因此Hypocacculus (Nessus) stat. rest。以下分类群Paraphilothis Vienna、Styphrus Motschulsky、Xerosaprinus Wenzel、Lophobregmus Wenzel、Vastosaprinus Wenzel、Auchmosaprinus Wenzel、Hemisaprinus Kryzhanovskij & Reichardt、Reichardtia Wenzel和Australopachylopus Lackner & Leschen均降为Saprinus Erichson亚属。因此,Saprinus (Paraphilothis) stat. nov., Saprinus (Styphrus) stat. nov., Saprinus (Xerosaprinus) stat. nov., Saprinus (Vastosaprinus) stat. nov., Saprinus (Auchmosaprinus) stat. nov., Saprinus (Lophobregmus) stat. nov., Saprinus(半球aprinus) stat. rest。新属Paraxenus Lackner gen. nov.由原属Pholioxenus Reichardt的南非和纳米比亚成员组成,并有以下新组合:Paraxenus diasi (Vienna) comb。11月;刺毛蕨(刺毛蕨)梳子。11月;纳米比亚副栉虫(维也纳)梳。11月;毛蕨(毛蕨)梳。11月;凤头凤尾(凤头凤尾)11月;和马祖尔副栉。11 .此外,根据对分布模式的分析,Myrmetini似乎是一个双极性(两性)分支,而Eremosaprinini似乎是西半球独有的。Euspilotini主要分布在西半球,仅在古北/东方地区有少量已知物种。Saprinini和hyppocaccini在世界范围内传播,但在南美洲很少有代表。全北极(特别是新北极)地区被认为是大约8000万年前亚科的起源中心(Ma)。调查被假设为该群体的祖先状态,随后在生活史上发生了几次独立的转变。Saprininae分支发育主要发生在古近纪(66 ~ 23.03 Ma),可能与哺乳动物的多样化有关。
{"title":"Saprininae: Phylogeny, biogeography and a new classification of the subfamily (Coleoptera: Histeridae)","authors":"Tomáš Lackner,&nbsp;Yuanmeng Miles Zhang,&nbsp;Carolin Kindler,&nbsp;Michal Motyka,&nbsp;Michael Balke","doi":"10.1111/syen.12606","DOIUrl":"10.1111/syen.12606","url":null,"abstract":"&lt;p&gt;With 74 genera and subgenera and approximately 740 species, Saprininae represent one of the largest subfamilies of Histeridae (Coleoptera: Histeroidea). Here, we present a phylogenetic hypothesis for Saprininae based on comprehensive taxonomic sampling. This is the first phylogenetic study combining molecular and morphological approaches (cytochrome &lt;i&gt;c&lt;/i&gt; oxidase subunit 1, 18S ribosomal RNA and 93 morphological characters). As a result, we propose a new classification; five new tribes are erected: &lt;b&gt;Myrmetini&lt;/b&gt; Portevin &lt;b&gt;stat. and sens. nov.&lt;/b&gt;; &lt;b&gt;Euspilotini&lt;/b&gt; Lackner, &lt;b&gt;trib. nov.&lt;/b&gt;; &lt;b&gt;Eremosaprinini&lt;/b&gt; Lackner, &lt;b&gt;trib. nov.&lt;/b&gt;; &lt;b&gt;Saprinini&lt;/b&gt; Blanchard, &lt;b&gt;sens. nov.&lt;/b&gt;; and &lt;b&gt;Hypocaccini&lt;/b&gt; Lackner, &lt;b&gt;trib. nov&lt;/b&gt;. Additional nomenclatural acts are as follows: &lt;i&gt;Chelyoxenus&lt;/i&gt; Hubbard is downgraded to a subgenus of &lt;i&gt;Geomysaprinus&lt;/i&gt; Ross, thus &lt;i&gt;Geomysaprinus&lt;/i&gt; (&lt;i&gt;Chelyoxenus&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Nessus&lt;/i&gt; Reichardt is transferred from a subgenus of &lt;i&gt;Hypocaccus&lt;/i&gt; C. Thomson to a subgenus of &lt;i&gt;Hypocacculus&lt;/i&gt; Bickhardt, thus &lt;i&gt;Hypocacculus&lt;/i&gt; (&lt;i&gt;Nessus&lt;/i&gt;) &lt;b&gt;stat. rest.&lt;/b&gt; The following taxa &lt;i&gt;Paraphilothis&lt;/i&gt; Vienna, &lt;i&gt;Styphrus&lt;/i&gt; Motschulsky, &lt;i&gt;Xerosaprinus&lt;/i&gt; Wenzel, &lt;i&gt;Lophobregmus&lt;/i&gt; Wenzel, &lt;i&gt;Vastosaprinus&lt;/i&gt; Wenzel, &lt;i&gt;Auchmosaprinus&lt;/i&gt; Wenzel, &lt;i&gt;Hemisaprinus&lt;/i&gt; Kryzhanovskij &amp; Reichardt, &lt;i&gt;Reichardtia&lt;/i&gt; Wenzel and &lt;i&gt;Australopachylopus&lt;/i&gt; Lackner &amp; Leschen are all downgraded into subgenera of &lt;i&gt;Saprinus&lt;/i&gt; Erichson. Thus, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Paraphilothis&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Styphrus&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Xerosaprinus&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Vastosaprinus&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Auchmosaprinus&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Lophobregmus&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Hemisaprinus&lt;/i&gt;) &lt;b&gt;stat. rest.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Reichardtia&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt;, &lt;i&gt;Saprinus&lt;/i&gt; (&lt;i&gt;Australopachylopus&lt;/i&gt;) &lt;b&gt;stat. nov.&lt;/b&gt; A new genus, &lt;i&gt;Paraxenus&lt;/i&gt; Lackner &lt;b&gt;gen. nov.,&lt;/b&gt; is proposed for the former South African and Namibian members of the genus &lt;i&gt;Pholioxenus&lt;/i&gt; Reichardt, with the following new combinations: &lt;i&gt;Paraxenus diasi&lt;/i&gt; (Vienna) &lt;b&gt;comb. nov.&lt;/b&gt;; &lt;i&gt;Paraxenus eremicola&lt;/i&gt; (Thérond) &lt;b&gt;comb. nov.&lt;/b&gt;; &lt;i&gt;Paraxenus namibiensis&lt;/i&gt; (Vienna) &lt;b&gt;comb. nov.&lt;/b&gt;; &lt;i&gt;Paraxenus oleolus&lt;/i&gt; (Thérond) &lt;b&gt;comb. nov.&lt;/b&gt;; &lt;i&gt;Paraxenus therondi&lt;/i&gt; (Olexa) &lt;b&gt;comb. nov.&lt;/b&gt;; and &lt;i&gt;Paraxenus uhligi&lt;/i&gt; (Mazur) &lt;b&gt;comb. nov.&lt;/b&gt; Additionally, based on the analysis of the dispersal patterns, &lt;b&gt;Myrmetini&lt;/b&gt; appear to be a bipolar (amphitropical) clade, while &lt;b&gt;Eremosaprinini&lt;/b&gt; appear to be exclusive to the Western Hemisphere. &lt;b&gt;Euspilotini&lt;/b&gt; are strongly represented in the Western Hemisphere, with only a handful of species known from the Palaearctic/Oriental regions. &lt;b&gt;Saprinini&lt;/b&gt; and &lt;b&gt;Hypocaccini&lt;/b&gt; are spread worldwide but ar","PeriodicalId":22126,"journal":{"name":"Systematic Entomology","volume":"49 1","pages":"48-71"},"PeriodicalIF":4.8,"publicationDate":"2023-08-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47143396","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Early evolution of the megadiverse subtribe Philonthina (Staphylinidae: Staphylininae: Staphylinini) and its Neotropical lineage Philonthina亚亚种的早期进化(葡萄门科:葡萄门亚科:葡萄门)及其新热带谱系
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-07-15 DOI: 10.1111/syen.12605
José M. Ramírez-Salamanca, Paula Cornejo, Mariana R. Chani-Posse

Philonthina (2864 species in 74 genera) represents almost one-half of the diversity of Staphylinini and is the largest of its subtribes. Most Philonthina species are found in tropical areas, but the origin of this diversity is still not well understood, mainly because their systematics belongs to a past era of taxonomy. Such is the case of a group of genera, most of them endemic to the Neotropical region (NT), whose monophyly has been repeatedly confirmed and which constitutes the so-called Neotropical lineage (NL). However, basal relationships have not been clarified, neither for Philonthina nor its NL. The NL includes ∼300 species and 26 genera, but two of them (Belonuchus Nordmann and Paederomimus Sharp) account for two-thirds of its species. Here, using the largest molecular-based phylogeny of Philonthina and its NL to date, a time-calibrated phylogeny, and ancestral range reconstructions for the NL, we explore the evolutionary history of Philonthina with a focus on its NL to reveal their early evolution and diversification in the NT. We show that Philonthina originated during the Late Cretaceous ∼ 67.6 Ma and diversified into five main lineages mostly during the Eocene. The NL originated in northwestern South America (SA) and the Andes not earlier than 64.2 Ma from a Laurasian lineage present in SA ∼49.1–69.9 Ma. Shortly afterward, that is, 39.9–56.9 Ma, the NL diversified into the Andean clade and the most species-rich Belonuchus-Paederomimus group. Our analyses recover northwestern SA and the Andes as the primary centers of diversification. Dispersal events to the northern landmasses took place at least three times during the Miocene in the early evolution of the NL.

Philonthina(74 属 2864 种)几乎占 Staphylinini 种类的二分之一,是其最大的亚属。大多数 Philonthina 种类都分布在热带地区,但人们对其多样性的起源仍不甚了解,这主要是因为它们的系统学属于过去的分类学时代。然而,无论是 Philonthina 属还是其 NL 属,其基系关系都尚未明确。NL 包括 300 个种和 26 个属,但其中的两个属(Belonuchus Nordmann 和 Paederomimus Sharp)占其物种的三分之二。在这里,我们利用迄今为止最大的基于分子的Philonthina及其NL的系统发育、时间校准系统发育和NL的祖先分布区重建,探索了Philonthina的进化史,重点是其NL,以揭示它们在新界的早期进化和多样化。我们的研究表明,Philonthina起源于晚白垩世∼67.6Ma,主要在始新世期间分化为五个主要品系。NL起源于南美洲(SA)西北部和安第斯山脉,不早于64.2Ma,来自于SA∼49.1-69.9Ma的劳拉氏系。此后不久,即 39.9-56.9 Ma,NL 分化为安第斯支系和物种最丰富的 Belonuchus-Paederomimus 群。我们的分析发现南澳大利亚西北部和安第斯山脉是主要的分化中心。在NL早期演化过程中,中新世至少发生了三次向北部陆地扩散的事件。
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引用次数: 0
Phylomitogenomics reveals mito-nuclear concordance in social wasps: The performance of mitochondrial markers and gene order for hymenopteran systematics 动物基因组学揭示了社会黄蜂的核核一致性:膜翅目昆虫系统中线粒体标记和基因顺序的表现
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-06-23 DOI: 10.1111/syen.12604
Rodolpho S. T. Menezes, Fernando B. Noll, Marcos Aragão, Marcel G. Hermes, Seán G. Brady

Mitochondrial (mtDNA) genes have served as widely utilised genetic loci for phylogenetic and phylogeographic studies of animals. However, the phylogenetic performance of many mtDNA genes has not been empirically evaluated across lineages within hymenopteran wasps. To address this question, we assembled and analysed mitogenomic data from social wasps, representing the four recognised tribes of Polistinae and all Epiponini genera. Additionally, we evaluated whether mtDNA gene order in Polistinae is congruent with its tribal classification. Using concatenation phylogenetic methods, we show phylogenetic congruence between mitogenomic and nuclear data. Statistically comparing the phylogenetic performance of individual mtDNA genes, we demonstrate that for social wasps the molecular markers COI, 16S, NAD5, and NAD2 perform best, while ATP6, COII, and 12S show the worst results. Finally, we verified that the tRNA cluster close to the noncoding region is a hotspot of genetic rearrangements in Vespidae and can be used as additional information for the systematics of this group. Together, these results indicate that mitogenomes contain robust phylogenetic signal to elucidate the evolutionary history of Vespidae. Moreover, our study identifies the best choice of mtDNA markers for systematic investigations of social wasps.

线粒体(mtDNA)基因是动物系统发育和系统地理学研究中广泛使用的基因位点。然而,许多 mtDNA 基因的系统发育性能尚未在膜翅目黄蜂的各系中得到经验性评估。为了解决这个问题,我们收集并分析了社会黄蜂的有丝分裂基因组数据,这些数据代表了 Polistinae 的四个公认部落和所有 Epiponini 属。此外,我们还评估了 Polistinae 的 mtDNA 基因顺序是否与其部落分类一致。我们使用连接系统发生学方法,显示了有丝分裂基因组和核数据之间的系统发生一致性。通过统计比较单个 mtDNA 基因的系统发生学表现,我们证明对于社会黄蜂来说,分子标记 COI、16S、NAD5 和 NAD2 的表现最好,而 ATP6、COII 和 12S 的表现最差。最后,我们验证了靠近非编码区的 tRNA 簇是蝶形目中基因重排的热点,可作为该类群系统学的附加信息。这些结果表明,有丝分裂基因组含有强大的系统发生学信号,可用于阐明蝶科的进化历史。此外,我们的研究还为社会性黄蜂的系统研究确定了 mtDNA 标记的最佳选择。
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引用次数: 0
A transcriptome-based phylogeny of Scarabaeoidea confirms the sister group relationship of dung beetles and phytophagous pleurostict scarabs (Coleoptera) 基于转录组的金龟子总科系统发育证实了金龟子和植食性胸膜炎金龟子(鞘翅目)的姐妹群关系
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-06-23 DOI: 10.1111/syen.12602
Lars Dietz, Matthias Seidel, Jonas Eberle, Bernhard Misof, Thaynara L. Pacheco, Lars Podsiadlowski, Sasanka Ranasinghe, Nicole L. Gunter, Oliver Niehuis, Christoph Mayer, Dirk Ahrens

Scarab beetles (Scarabaeidae) are a diverse and ecologically important group of angiosperm-associated insects. As conventionally understood, scarab beetles comprise two major lineages: dung beetles and the phytophagous Pleurosticti. However, previous phylogenetic analyses have not been able to convincingly answer the question whether or not the two lineages form a monophyletic group. Here, we report our results from phylogenetic analyses of more than 4000 genes mined from transcriptomes of more than 50 species of Scarabaeidae and other Scarabaeoidea. Our results provide convincing support for the monophyly of Scarabaeidae, confirming the debated sister group relationship of dung beetles and phytophagous pleurostict scarabs. Supermatrix-based maximum likelihood and multispecies coalescent phylogenetic analyses strongly imply the subfamily Melolonthinae as currently understood being paraphyletic. We consequently suggest various changes in the systematics of Melolonthinae: Sericinae Kirby, 1837 stat. rest. and sensu n. to include the tribes Ablaberini, Diphucephalini and Sericini, and Sericoidinae Erichson, 1847 stat. rest. and sensu n. to include the tribes Automoliini, Heteronychini, Liparetrini, Maechidiini, Phyllotocini, Scitalini, and Sericoidini. Both subfamilies appear to consistently form a monophyletic sister group to all remaining subfamilies so far included within pleurostict scarabs except Orphninae. Our results represent a major step towards understanding the diversification history of one of the largest angiosperm-associated radiations of beetles.

金龟子(Scarabaeidae)是一种多样且具有重要生态意义的被子植物相关昆虫。按照惯例,金龟子由两个主要谱系组成:粪甲虫和植食性胸膜甲虫。然而,以前的系统发育分析并不能令人信服地回答这两个谱系是否形成一个单系群的问题。在这里,我们报告了我们对从50多种斯卡拉贝科和其他斯卡拉贝总科的转录组中提取的4000多个基因的系统发育分析结果。我们的研究结果为金龟子科的单系性提供了令人信服的支持,证实了有争议的甲虫和植食性胸膜炎金龟子的姐妹群关系。基于超矩阵的最大似然和多物种联合系统发育分析强烈暗示了目前所理解的Melolonthinae亚科是异系的。因此,我们提出了Melolonshinae系统学的各种变化:Sericinae Kirby,1837 stat.rest.和sensu.n.包括Ablaberini、Dipucephalini和Sericini部落,Sericoidinae Erichson,1847 stat.rest.和senson.包括Automolini、Heteronychini、Liparetrini、Maechidiini、Phyllotocini、Scitalini和Sericoidini部落。这两个亚科似乎一致地形成了一个单系姐妹群,与迄今为止包括在胸膜口圣甲虫中的所有其他亚科(Orphinae除外)形成姐妹群。我们的研究结果代表着朝着理解最大的被子植物相关甲虫辐射之一的多样化历史迈出了重要一步。
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引用次数: 2
Untangling the assassin's web: Phylogeny and classification of the spider-associated Emesine complex (Hemiptera: Reduviidae) 解开刺客之网:蜘蛛相关的Emesine复合体的系统发育和分类(半翅目:Reduviidae)
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-06-19 DOI: 10.1111/syen.12603
S. Standring, D. Forero, C. Weirauch

Web-building spiders are formidable predators, yet assassin bugs in the Emesine Complex (Hemiptera: Reduviidae: Emesinae, Saicinae, and Visayanocorinae) prey on spiders. The Emesine Complex comprises >1000 species and these web-associated predatory strategies may have driven their diversification. However, lack of natural history data and a robust phylogenetic framework currently preclude tests of this hypothesis. We combine Sanger (207 taxa, 3865 bp) and high-throughput sequencing data (15 taxa, 381 loci) to generate the first taxon- and data-rich phylogeny for this group. We discover rampant paraphyly among subfamilies and tribes, necessitating revisions to the classification. We use ancestral character state reconstructions for 40 morphological characters to identify diagnostic features for a revised classification. Our new classification treats Saicinae Stål and Visayanocorinae Miller as junior synonyms of Emesinae Amyot and Serville, synonymizes the emesine tribes Ploiariolini Van Duzee and Metapterini Stål with Emesini Amyot and Serville, and recognises six tribes within Emesinae (Collartidini Wygodzinsky, Emesini, Leistarchini Stål, Oncerotrachelini trib.n., Saicini Stål stat.n., and Visayanocorini Miller stat.n.). We show that a pretarsal structure putatively involved in web-associated behaviours evolved in the last common ancestor of Emesini, the most species-rich clade within Emesinae, suggesting that web-associations could be widespread in Emesinae.

结网蜘蛛是可怕的捕食者,然而Emesine复合体(半翅目:Reduviidae:Emesinae、Saicinae和Visayanocorinae)中的刺吸虫也捕食蜘蛛。Emesine Complex包括1000个物种,这些与蜘蛛网相关的捕食策略可能是它们多样化的驱动力。然而,由于缺乏自然历史数据和稳健的系统发育框架,目前还无法对这一假设进行检验。我们结合桑格测序数据(207 个类群,3865 bp)和高通量测序数据(15 个类群,381 个位点),首次为该类群建立了类群和数据丰富的系统发育关系。我们发现亚科和支系之间存在严重的旁系现象,因此有必要对分类进行修订。我们对 40 个形态特征进行了祖先特征状态重建,以确定修订分类的诊断特征。我们的新分类法将 Saicinae Stål 和 Visayanocorinae Miller 视为 Emesinae Amyot 和 Serville 的小同义词,将 emesine tribes Ploiariolini Van Duzee 和 Metapterini Stål 与 Emesini Amyot 和 Serville 同义,并在 Emesinae 中承认了六个部落(Collartidini Wygodzinsky、Emesini、Leistarchini Stål 、Ocerotrachelini trib.n. 和 Saicini Stål stat.n.)、和 Visayanocorini Miller stat.n.)。我们的研究表明,在Emesinae中物种最丰富的支系Emesini的最后一个共同祖先中进化出了一种假定参与网相关行为的跗前结构,这表明网相关行为可能在Emesinae中广泛存在。
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引用次数: 0
Museomics reveals evolutionary history of Oreina alpine leaf beetles (Coleoptera: Chrysomelidae) 博物馆学揭示了奥利纳高山叶甲虫的进化史(鞘翅目:金花虫科)
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-06-10 DOI: 10.1111/syen.12601
Jérémy Gauthier, Matthias Borer, Emmanuel F. A. Toussaint, Julia Bilat, Horst Kippenberg, Nadir Alvarez

The monophyletic status of the genus Oreina as well as its phylogenetic relation to the closely related genera Chrysolina, Crosita and Cyrtonus has been debated for several decades. To assess the status of the genus and understand its evolutionary history, we performed a museomics study on 148 museum specimens belonging to 25 of the 28 described Oreina species as well as 19 other chrysomelid species, mainly from the genus Chrysolina. Using innovative molecular methods relying on hyRAD hybridization capture, we succeeded in recovering 2235 shared nuclear loci. Phylogenomic analyses clearly demonstrated that Oreina species form a clade separated from Chrysolina. These analyses also revealed the position of Chrysolina fastuosa outside of the genus Chrysolina, supporting the following taxonomic status updates: Fasta stat. rev., Fasta fastuosa comb. nov. Within the genus Oreina, we further propose the synonymization of Oreina (Frigidorina) syn. n. and Oreina (Virgulatorina) syn. n. with Oreina (Chrysochloa). Divergence time and ancestral range estimations suggested that Oreina originated approximately 53 Ma in the Alps. Ancestral host plant reconstruction revealed key shifts during Oreina diversification. Overall, our study reinforces the importance of museum collections for molecular analysis and the effectiveness of hybridization capture approaches for conducting phylogenomic studies and finely investigating controversial taxonomic debates.

Oreina属的单系地位及其与近缘属Chrysolina、Crosita和Cyrtonus的系统发育关系已经争论了几十年。为了评估该属的地位和了解其进化史,我们对148个博物馆标本进行了博物馆组学研究,这些标本属于28个已描述的Oreina种中的25个,以及其他19个主要来自Chrysolina属的chrysomelid种。利用基于hyRAD杂交捕获的创新分子方法,我们成功地恢复了2235个共享的核位点。系统基因组学分析清楚地表明,Oreina种形成了一个与chryssolina分离的分支。这些分析还揭示了黄蜡属外黄蜡属的位置,支持以下分类状态更新:黄蜡属stat. rev.,黄蜡属comb.。11 .在Oreina属中,我们进一步提出Oreina (Frigidorina) syn. n和Oreina (Virgulatorina) syn. n与Oreina (Chrysochloa)同义。分化时间和祖先范围估计表明,奥瑞纳起源于阿尔卑斯山脉约53ma。祖先寄主植物重建揭示了Oreina多样化过程中的关键转变。总的来说,我们的研究强调了博物馆收藏对分子分析的重要性,以及杂交捕获方法在进行系统基因组学研究和精细调查有争议的分类学争论方面的有效性。
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引用次数: 0
Phylogenomics resolves major relationships of Catocala underwing moths 系统发育基因组学解决Catocala underwing蛾的主要关系
IF 4.8 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2023-06-01 DOI: 10.1111/syen.12595
Nicholas T. Homziak, Caroline G. Storer, Lawrence F. Gall, Robert J. Borth, Akito Y. Kawahara

Underwing moths in the genus Catocala Schrank are among the most charismatic of Lepidoptera. Catocala is also one of the most diverse genera worldwide in the speciose family Erebidae, but a phylogenetic framework for the genus is lacking. Here we reconstruct the first comprehensive molecular phylogeny for the genus based on 685 anchored hybrid enrichment loci sampled from 161 Catocala species (99 Nearctic, 62 Palearctic), four species of Ulotrichopus Wallengren and 33 outgroups. Phylogenetic analysis unambiguously recovers Catocala and Catocala + Ulotrichopus as monophyletic with strong support and resolves many backbone relationships within Catocala. Our results confirm the classification of previously proposed taxonomic subgroups of Catocala, including seven based on recent molecular/morphological evidence, and ten based on early twentieth-century morphological research. Mapping of larval host plant use onto the tree shows Fabaceae to be the likely ancestral host plant family for Catocala and Catocala + Ulotrichopus. There appear to have been at least 18 independent larval host plant shifts to nine plant families, the most common shift being from Fabaceae to Fagaceae. Larval host plant use has likely played an important role in the evolutionary history of Catocala, with several rapid diversification events propelled by shifts to novel larval host plants, particularly in the North American Catocala fauna.

Catocala Schrank属的潜蛾是鳞翅目中最具魅力的蛾类之一。Catocala也是世界上物种科Erebidae中最多样化的属之一,但该属缺乏系统发育框架。在这里,我们基于从161个Catocala物种(99个近北极,62个北北极)、4个Ulotrichopus Wallengren物种和33个外类群中采样的685个锚定杂交富集位点,重建了该属的第一个综合分子系统发育。系统发育分析明确恢复Catocala和Catocala + Ulotrichopus是一个单系,有强大的支持,并解决了Catocala内的许多主干关系。我们的结果证实了先前提出的Catocala分类亚群的分类,其中7个基于最近的分子/形态学证据,10个基于20世纪早期的形态学研究。幼虫寄主植物在树上的用途图显示,蚕豆科可能是Catocala和Catocala的祖先寄主植物家族 + Ulotrichopus。至少有18个独立的幼虫寄主植物转移到9个植物科,最常见的转移是从壳斗科转移到壳斗科。幼虫寄主植物的使用可能在Catocala的进化史上发挥了重要作用,由于转向新的幼虫寄主植物,特别是在北美Catocala动物群中,导致了几次快速多样化事件。
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引用次数: 0
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Systematic Entomology
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