Systematic Entomology最新文献

Cockroaches are an ecologically and economically important insect group, but some fundamental aspects of their evolutionary history remain unresolved. In particular, there are outstanding questions about some of the deeper relationships among cockroach families. As a group transferred from Blaberoidea Saussure to Blattoidea Latreille, the evolutionary history of the family Anaplectidae Walker requires re-evaluation. In our study, we infer the phylogeny of Blattoidea based on the mitochondrial genomes of 28 outgroup taxa and 67 ingroup taxa, including 25 newly sequenced blattoid species mainly from the families Anaplectidae and Blattidae Latreille. Our results indicate that Blattoidea is the sister group of the remaining Blattodea Brunner von Wattenwyl and that Blattoidea can be divided into three main clades: Blattidae + Tryonicidae McKittrick & Mackerras, Lamproblattidae McKittrick + Anaplectidae and Termitoidae Latreille + Cryptocercidae Handlirsch. Our analyses provide robust support for previously uncertain hypotheses. The sister group of Termitoidae + Cryptocercidae (Xylophagodea Engel) is inferred to constitute the rest of Blattoidea, for the first time. Within Blattidae, Hebardina Bey-Bienko is placed as the sister lineage to the rest of Blattidae. The subfamily Archiblattinae is polyphyletic, Blattinae is paraphyletic and Polyzosteriinae is monophyletic (Macrocercinae Roth not included); the genus Periplaneta Burmrister is polyphyletic. Based on the results of our phylogenetic analyses, we have revised these taxa. A new subfamily, Hebardininae subfam.nov., is proposed in Blattidae. Archiblattinae and Shelfordella Adelung are synonymized with Blattinae and Periplaneta, respectively: Archiblattinae Kirby syn.nov. and Shelfordella Adelung syn.nov. Our inferred divergence times indicate that Blattoidea emerged in the Late Triassic, with six families in Blattoidea diverging in the Middle and Late Jurassic. We suggest that the divergences among lineages of Asian Blattidae and Anaplectidae were driven by the uplift of the Himalayas and deglaciation during the Quaternary, leading to the present-day distributions of these taxa.

Complex bulk samples of insects from biodiversity surveys present a challenge for taxonomic identification, which could be overcome by high-throughput imaging combined with machine learning for rapid classification of specimens. These procedures require that taxonomic labels from an existing source data set are used for model training and prediction of an unknown target sample. However, such transfer learning may be problematic for the study of new samples not previously encountered in an image set, for example, from unexplored ecosystems, and require methods of domain adaptation that reduce the differences in the feature distribution of the source and target domains (training and test sets). We assessed the efficiency of domain adaptation for family-level classification of bulk samples of Coleoptera, as a critical first step in the characterization of biodiversity samples. Neural network models trained with images from a global database of Coleoptera were applied to a biodiversity sample from understudied forests in Cyprus as the target. Within-dataset classification accuracy reached 98% and depended on the number and quality of training images, and on dataset complexity. The accuracy of between-datasets predictions (across disparate source–target pairs that do not share any species or genera) was at most 82% and depended greatly on the standardization of the imaging procedure. An algorithm for domain adaptation, domain adversarial training of neural networks (DANN), significantly improved the prediction performance of models trained by non-standardized, low-quality images. Our findings demonstrate that existing databases can be used to train models and successfully classify images from unexplored biota, but the imaging conditions and classification algorithms need careful consideration.

Molecular markers are crucial to identify new pest invasions before they can become established but current methods are often inadequate.

The Polleniidae (Diptera) are a family of flies best known for species of the genus Pollenia, which overwinter inside human dwellings. Previously divided across the Calliphoridae, Tachinidae and Rhinophoridae, the polleniid genera have only recently been united. Several studies have utilized molecular data to analyse polleniid phylogenetic relationships, although all have suffered from low taxon sampling or insufficient phylogenetic signal in molecular markers. To alleviate these problems, we utilized two automated organellar genome extraction software, GetOrganelle and MitoFinder, to assemble mitogenomes from genome skimming data from 22 representatives of the polleniid genera: Dexopollenia, Melanodexia, Morinia, Pollenia and Xanthotryxus. From these analyses, we provide 14 new mitogenomes for the Polleniidae and perform phylogenetic analyses of 13 protein-coding mitochondrial genes using both maximum likelihood and Bayesian inference. Subfamilial phylogenetic relationships within the Polleniidae are interrogated and Pollenia is found to form a monophyletic clade sister to Melanodexia, Morinia and Dexopollenia, providing no evidence for the synonymisation of any of these genera. Our topology conflicts with previous morphology-based cladistic interpretations, with the amentaria, griseotomentosa, semicinerea and viatica species-groups resolving as non-monophyletic. We provide support for our topology through analysis of adult morphology and male and female terminalia, while identifying new diagnostic characters for some of the clades of the Pollenia. To test the validity of the current diagnostic morphology in the Polleniidae, newly assembled cytochrome C oxidase subunit 1 (COI) data are combined with a polleniid COI barcode reference library and analysed using the species delimitation software ASAP. COI barcodes support the current morphologically defined species within the Pollenia.

Sphaeriusidae (Coleoptera: Myxophaga) is a group of shiny, blackish and hemispherical riparian beetles, known for their miniaturized bodies. They are worldwide in distribution, but very limited information is available about taxonomic and morphological diversity, and natural and evolutionary history. The aim of this study is to help fill in these gaps. We examined the external morphology of modern representatives using scanning electron microscopy (SEM), and reconstructed the phylogeny of the family using five DNA markers (cytochrome oxidase I, 18S rRNA, 28S rRNA, CAD and wingless). Our results suggest a larger morphological diversity than previously expected, corresponding to the deep genetic divergences of principal lineages. We also examined two inclusions in 99-million-year-old Burmese amber. The integration of all evidence allows us to recognize three genera: the extinct genus †Burmasporum Kirejtshuk, the newly defined genus Bezesporum gen.nov. preserved in Burmese amber (B. burmiticum sp.nov.) and present in the modern fauna of Southeast Asia, and the genus Sphaerius Waltl with a world-wide distribution. Sphaerius species are morphologically highly uniform, with the exception of species from Australia and South Africa, which share some characteristics with Bezesporum gen.nov. despite being resolved as deeply nested lineages of Sphaerius by DNA data. The presence of Bezesporum gen.nov. in Burmese amber and in recent fauna indicates that Sphaeriusidae largely maintained their specific morphology and specialized riparian lifestyle for at least 100 million years. Therefore, they can be considered an exceptionally conserved group, with a minimum of evolutionary changes over a long period. Our study also demonstrates that the species numbers and fine-scale morphological diversity of Sphaeriusidae are larger than expected in both the past and present-day faunas. Both were apparently underestimated due to the minute body size and cryptic habits of these beetles.

Minute moss beetles (Hydraenidae) are one of the most speciose and widespread families of aquatic Coleoptera, with an estimated 4000 extant species, found in the majority of aquatic habitats from coastal rock pools to mountain streams and from the Arctic Circle to the Antarctic islands. Molecular phylogenetic works have improved our understanding of the evolutionary history of the megadiverse Hydraena, Limnebius and Ochthebius in recent years, but most genera in the family have not yet been included in any phylogenetic analyses, particularly most of those which are restricted to the Southern Hemisphere. Using a multimarker molecular matrix, sampling over 40% of described species richness and 75% of currently recognized genera, we infer a comprehensive molecular phylogeny of these predominantly Gondwanan Hydraenidae. Whilst the genera we focus on are morphologically diverse, and currently classified across all four hydraenid subfamilies, our phylogenetic analyses suggest that these Gondwanan genera may instead constitute a single clade. As a result of our findings, the African genus Oomtelecopon Perkins syn.n. is shown to nest within Coelometopon Janssens, the New Zealand Homalaena Ordish syn.n. and Podaena Ordish syn.n. are synonymised with Orchymontia Broun, and the South African Pterosthetops Perkins syn.n. is synonymised with Prosthetops Waterhouse, resulting in Pterosthetopini Perkins syn.n. being synonymised with Prosthetopini Perkins. Mesoceratops Bilton & Jäch gen.n. is erected to accommodate six former members of Mesoceration Janssens, which is shown to be polyphyletic. We propose the replacement name Orchymontia ordishi Jäch & Bilton nom.n. for Homalaena dilatata Ordish, 1984 (now a junior homonym); altogether 39 new combinations are proposed. Our Bayesian divergence times infer an origin for this ‘Gondwana group’ of genera in Africa plus Madagascar in the mid-Cretaceous and suggest that both vicariant and dispersal processes, together with extinctions, have shaped the biogeographic history of these beetles in the Southern Hemisphere during the Cretaceous, resulting in geographically conserved extant lineages. Finally, we reconstruct ancestral habitat shifts across our phylogeny, revealing numerous changes in habitat occupancy in these genera, including multiple origins of fully terrestrial, humicolous taxa in different regions.

Leafmining insects have extraordinarily intimate relationships with their host plants and are therefore prime candidates for potential ecological speciation in sympatry, but how commonly this mode of speciation occurs in any group of life remains debated. Prior research on the pygmy moth (Nepticulidae) genus Ectoedemia using morphology, DNA barcoding, and multi-marker phylogenetic approaches left two unresolved species complexes, each with each four described species. In this study, we thoroughly sampled each complex across a range of host plants and localities across Europe. We used a double digest restriction-site associated DNA (ddRAD) sequencing approach to clarify species boundaries. In the E. rubivora complex, ddRAD data resolved all four species, contrary to morphological and COI data, which supports a potential scenario of host plant-driven speciation where the host plant specialization provides an ecological barrier to hybridization. However, we found no indication of host race formation within the oligophagous E. atricollis (Stainton). In the E. subbimaculella complex, SNP data only partly distinguishes between the parapatric E. subbimaculella (Haworth) and E. heringi (Toll), but with some statistical overlap, suggesting incomplete lineage sorting which may represent early phases of host-based ecological speciation, or admixture following a period of isolation.

Lachesillidae is one of the largest families of bark lice and includes more than 420 described species, in 26 genera and three subfamilies. This family belongs in the suborder Psocomorpha, infraorder Homilopsocidea. The classification of Lachesillidae is based on male and female genital morphologies, but questions remain regarding the monophyly of the family and some of its genera. Here, we used whole genome and transcriptome data to generate a 2060 orthologous gene data matrix of 2,438,763 aligned bp and used these data to reconstruct the phylogenetic relationships of species of Lachesillidae and relatives. Taxon sampling included 24 species from Lachesillidae and 23 additional species belonging to related families from the infraorders Homilopsocidea and Caeciliusetae. Phylogenetic relationships reconstructed with maximum likelihood and coalescent-based analyses indicated paraphyly of Lachesillidae, and monophyly of the tribe Graphocaeciliini and the genus Lachesilla were also never recovered. Instability was observed in the position of Eolachesilla chilensis, which was recovered either as sister to Elipsocidae or to Mesopsocidae species, so we cannot conclusively determine the position of this genus within the Homilopsocidea. Given our results, a reclassification is necessary, but more taxon sampling of other species in Mesopsocidae and Peripsocidae would be useful to add to a tree in future before proposing a new classification.

Mitochondrial genomes have been widely used for phylogenetic reconstruction and evolutionary analysis in various groups of Insecta. Gene rearrangements in the mitogenome can be informative characters for phylogenetic reconstruction and adaptive evolution. Trichoptera is one of the most important groups of aquatic insects. Prior to this study, complete mitogenomes from Trichoptera were restricted to eight families, resulting in a biased view of their mitogenome structure and evolution. Here, we assemble new mitogenomes for 66 species by high-throughput sequencing. The mitogenomes of 19 families and 47 genera are documented for the first time. Combined with 16 previously published mitogenomes of Trichoptera, we find 14 kinds of gene rearrangement patterns novel for Trichoptera, including rearrangement of protein-coding genes, tRNAs and control regions. Simultaneously, we provide evidence for the occurrence of tandem duplication and non-random loss events in the mitogenomes of three families. Phylogenetic analyses show that Hydroptilidae was recovered as a sister group to Annulipalpia. The increased nucleotide substitution rate and adaptive evolution may have affected the mitochondrial gene rearrangements in Trichoptera. Our study offers new insights into the mechanisms and patterns of mitogenome rearrangements in Insecta at large and into the usefulness of mitogenomic gene order as a phylogenetic marker within Trichoptera.

Several prominent evolutionary theories propose mechanisms whereby the evolution of a defensive trait or suite of traits causes significant shifts in species diversification rate and niche evolution. We investigate the role of cuticular spines, a highly variable morphological defensive trait in the hyperdiverse ant genus Polyrhachis, on species diversification and geographic range size. Informed by key innovation theory and the escape-and-radiate hypothesis, we predicted that clades with longer spines would exhibit elevated rates of diversification and larger range sizes compared to clades with shorter spines. To address these predictions, we estimated phylogenetic relationships with a phylogenomic approach utilizing ultraconserved elements and compiled morphological and biogeographic trait databases. In contrast to the first prediction, we found no association between diversification rate and any trait (spine length, body size and range size), with the sole exception of a positive association between range size and diversification in one of three trait-based diversification analyses. However, we recovered a positive phylogenetic correlation between spine length and geographic range size, suggesting that spines promote expanded geographic range. Notably, these results were consistent across analyses using different phylogenetic inference approaches and spine trait measurement schemes. This study provides a rare investigation of the role of a defensive trait on geographic range size, and ultimately supports the hypothesis that defensive spines are a factor in increased range size in Polyrhachis ants. Furthermore, the lack of support for an association between spines and diversification, which contrasts with previous work demonstrating a positive association between spines and diversification rate, is intriguing and warrants further study.