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Phylogenomics-based click-beetle classification tackles multiple origins of phenotypic modifications 基于系统基因组学的点击甲虫分类解决了表型修饰的多个起源
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-11-06 DOI: 10.1111/syen.70017
Michal Motyka, Dominik Kusy, Elizabeth T. Arias, Ladislav Bocak

Click beetles (Elateridae) have garnered scientific interest due to their diversity, bioluminescence and ontogenetic modifications. However, their classification is still poorly resolved. Here, we explore the internal relationships by analysing 45 tribes and ~4200 orthologs. We classify elaterids into 17 subfamilies and 51 tribes. We propose new ranks for Protelaterinae stat. nov., Thylacosternini stat. nov. (Lissominae), Semiotina stat. nov. (Dendrometrini) and Aplastini stat. nov. (Elaterinae). We resurrect Drapetini stat. nov. (Lissominae), Pachyderini stat. nov. (Agrypninae) and Corymbitina stat. nov. (Dendrometrini) and synonymise Pomachiliini syn. nov. and Synaptini syn. nov. to Agriotini and Quasimusini syn. nov. to Negastriini. Hypnoidinae retains its subfamily rank, regardless of its documented affinities to Dendrometrinae. Our research provides a phylogenomic framework for understanding the evolution of morphological disparity. The non-clicking forms have evolved repeatedly in separate groups since the early evolution of click beetles. Cebrionini, Pleonomini and Plastocerini represent soil-dwelling click beetles living in seasonally arid areas. They exhibit high sexual dimorphism, but either both sexes are winged (Pleonomini, Plastocerini), or females have slightly shortened elytra (some Cebrionini). Omalisinae and Drilini (Agrypninae) have neotenic females with a modified thoracic morphology, vestigial to absent elytra and always absent wings. Aplastine females resemble Omalisinae but share biological traits with Cebrionini. We propose that genomic data suggest different relationships among clicking and non-clicking elaterids than earlier morphology-based hypotheses, which suggested the placement of some modified click beetles in Dascilloidea and Cantharoidea, respectively, within a cantharoid clade of Elateroidea. Future research should investigate the molecular background of ontogenetic modifications, concentrating on potential differences between slightly modified groups from seasonally arid regions (e.g., Cebrio spp.) and predators with highly modified neotenic females (e.g., Omalisus spp. and Drilus spp.).

叩头甲虫(叩头甲虫科)由于其多样性、生物发光和个体发生修饰而引起了科学界的兴趣。然而,它们的分类仍然没有得到很好的解决。在这里,我们通过分析45个部落和约4200个同源词来探索内部关系。我们将扁形动物分为17个亚科和51个部落。我们提出了Protelaterinae stat. nov.、Thylacosternini stat. nov. (Lissominae)、Semiotina stat. nov. (Dendrometrini)和Aplastini stat. nov. (Elaterinae)的新行列。我们复活了Drapetini stat. 11 (Lissominae)、Pachyderini stat. 11 (Agrypninae)和Corymbitina stat. 11 (Dendrometrini),并将Pomachiliini syn11和Synaptini syn11同义为Agriotini,将Quasimusini syn11同义为Negastriini。催眠科保留了它的亚科等级,而不管它与树endrometrinae的亲缘关系。我们的研究为理解形态差异的进化提供了一个系统基因组框架。自咔哒甲虫的早期进化以来,非咔哒甲虫就在不同的群体中反复进化。锥虫、锥虫和锥虫是生活在季节性干旱地区的土栖click甲虫。它们表现出高度的两性二态性,但要么两性都有翅膀(Pleonomini, Plastocerini),要么雌性的鞘翅略短(一些Cebrionini)。Omalisinae和Drilini (Agrypninae)有发育不全的雌性,胸部形态改变,鞘翅退化到缺失,并且总是缺失翅膀。雌性章鱼类似于Omalisinae,但与章鱼有共同的生物学特征。我们提出,基因组数据表明,与先前基于形态学的假设相比,点击类和不点击类之间存在不同的关系,这表明一些改良的点击类甲虫分别存在于dascillo总科和cantharo总科中,属于elatero总科的一个cantharo总科。未来的研究应该调查个体发生改变的分子背景,集中研究来自季节性干旱地区的轻度改变群体(如Cebrio spp)和具有高度改变的新生期雌性捕食者(如Omalisus spp.和Drilus spp.)之间的潜在差异。
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引用次数: 0
Phylogeny, systematics and evolution of mimicry patterns in Neotropical limenitidine butterflies 新热带limenitidine蝴蝶的系统发育、系统分类学和进化
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-30 DOI: 10.1111/syen.70007
Erika Páez V., Gael J. Kergoat, Nicolas Chazot, Mohamed Benmesbah, Adriana D. Briscoe, Susan D. Finkbeiner, André V. L. Freitas, Robert P. Guralnick, Ryan I. Hill, Marcus R. Kronforst, Luiza Moraes Magaldi, Sean P. Mullen, Ichiro Nakamura, Hannah L. Owens, Niklas Wahlberg, Maxwell Woodbury, Marianne Elias, Keith R. Willmott

The Neotropical butterfly genus Adelpha Hübner exhibits remarkable species diversity and striking convergence in wing colour patterns potentially explained by mimicry, making it an exceptional model for exploring trait evolution and its relationship with speciation. To date, unresolved phylogenetic relationships hinder a comprehensive understanding of the evolutionary biology of the genus. Using a novel multi-marker dataset combining one mitochondrial and 15 nuclear gene fragments, we generate the most comprehensive phylogeny of the genus Adelpha to revisit its systematics and investigate the evolution of mimicry colour patterns. Our dataset encompasses 83 of the 87 known extant species and six Limenitis species that were recently excluded from Adelpha (134 of c. 160 subspecies in total), collectively displaying 14 distinct mimicry patterns. We provide conclusive evidence that corroborates previous work on the polyphyly of Adelpha as historically conceived and describe the genus Adelphina Páez & Willmott n. gen. to stabilise the nomenclature. The comprehensive phylogeny provided in this study lays a solid foundation for future research into the processes driving diversification within these species interacting through mimicry. Ancestral character state reconstruction reveals the gradual evolution of mimicry patterns. The more common mimicry pattern IPHICLUS (forewing with orange subapical spot and white band) is inferred as ancestral, but repeated convergent evolution is also recovered. Evolutionary convergence is also observed for the second most abundant mimicry pattern, COCALA (orange-white banded). Increased rates of mimicry pattern evolution are also found towards the equator. These results underscore the complexity of mimicry evolution in the Neotropical limenitidines, i.e., Adelpha and Adelphina n. gen., emphasising the need to explore its interplay with other biotic and abiotic factors.

新热带蝴蝶属Adelpha h bner显示出显著的物种多样性和翅膀颜色图案的惊人趋同,这可能可以用模仿来解释,使其成为探索性状进化及其与物种形成关系的特殊模型。迄今为止,未解决的系统发育关系阻碍了对该属进化生物学的全面理解。利用一个新的多标记数据集,结合一个线粒体和15个核基因片段,我们生成了最全面的Adelpha属系统发育,以重新审视其系统学并研究模仿颜色图案的进化。我们的数据集包括87个已知现存物种中的83个,以及最近从Adelpha中排除的6个Limenitis物种(总共约160个亚种中的134个),总共显示出14种不同的模仿模式。我们提供了确凿的证据,证实了以前的工作,对Adelphina多聚性的历史构想和描述Adelphina属Páez &; Willmott n. gen.以稳定命名法。本研究提供的综合系统发育为未来研究这些物种通过模仿相互作用的多样化过程奠定了坚实的基础。祖先性格状态的重建揭示了模仿模式的逐渐演变。更常见的模仿模式IPHICLUS(前翅有橙色的尖下斑点和白色带)被推断为祖先,但重复的趋同进化也被恢复。进化趋同现象也出现在第二丰富的模仿模式COCALA(橙白条纹)上。向赤道方向的模仿模式进化速度也在加快。这些结果强调了新热带limenitidines(即Adelpha和Adelphina n. gen.)拟态进化的复杂性,强调了探索其与其他生物和非生物因素相互作用的必要性。
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引用次数: 0
Integrating Sanger and next-generation sequencing data sheds light on phylogenetic relationships among gelechioid moths (Lepidoptera: Gelechioidea) 整合Sanger和下一代测序数据,揭示了球蛾类飞蛾的系统发育关系(鳞翅目:球蛾总科)
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-28 DOI: 10.1111/syen.70009
Etka Yapar, Andrea Chiocchio, Maria Heikkilä, Jadranka Rota, Lauri Kaila, Niklas Wahlberg

Accounting for the estimated number of undescribed species, Gelechioidea are thought to be among the most species-rich superfamilies of Lepidoptera, with 18,500 described species, including numerous pests of economically significant crops such as cotton, tomato and wheat. Family-level topology of the superfamily and the extent and the number of accepted families have received important revisions throughout the previous phylogenetic work on the group. Here we extracted 1767 nuclear protein-coding genes from genomic and transcriptomic data from 57 ingroup taxa, including Haplochrois buvati Baldizzone and Urodeta hibernella Staudinger, for which the whole-genome sequences were generated in this study. We first analyse this phylogenomic dataset within a maximum likelihood framework to revisit the interfamilial relationships within Gelechioidea and then integrate it with the existing taxon-rich, Sanger-sequenced data from up to 24 genes to re-evaluate the extent of the 20 currently accepted families by analysing this integrated dataset encompassing 381 ingroup taxa. Although we also recover some of the previously suggested multifamilial clades, the backbone topology we infer presents novel arrangements of families compared to previously published work: overall, we observe that Gelechioidea have diversified in four main lineages and find Stenomatinae (Depressariidae) to be sister to the rest of Gelechioidea. We therefore elevate it to family, Stenomatidae stat. nov. Moreover, we find the current circumscription of Elachistidae to be non-monophyletic and propose a new delimitation to include the subfamilies Elachistinae, Parametriotinae, Cacochroinae (Depressariidae) and Ethmiinae stat. nov.

考虑到未被描述的物种的估计数量,Gelechioidea被认为是鳞翅目中物种最丰富的超科之一,有18500种被描述的物种,包括许多经济上重要的作物,如棉花、西红柿和小麦的害虫。超家族的家族级拓扑结构以及被接受的家族的范围和数量在之前关于该群体的系统发育工作中得到了重要的修订。本研究从包括Haplochrois buvati Baldizzone和Urodeta hibernella Staudinger在内的57个类群的基因组和转录组学数据中提取了1767个核蛋白编码基因,并对其进行了全基因组测序。我们首先在最大似然框架内分析该系统基因组数据集,以重新审视Gelechioidea内的家族间关系,然后将其与现有的分类单元丰富的sanger测序数据相结合,通过分析包含381个群内分类群的集成数据集,重新评估目前接受的20个家族的范围。虽然我们也恢复了一些先前提出的多家族分支,但我们推断的骨干拓扑结构与先前发表的工作相比,呈现出新的家庭安排:总体而言,我们观察到Gelechioidea在四个主要谱系中多样化,并发现Stenomatinae (ariidae)是Gelechioidea其余分支的姐妹。此外,我们发现Elachistidae目前的界限是非单系的,并提出了一个新的划分,包括Elachistinae, Parametriotinae, Cacochroinae (ariidae)和Ethmiinae stat. 11。
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引用次数: 0
Alone no more—Integrative taxonomy of New Zealand odd-clawed spiders challenges the monotypy of Pianoa and Gradungula (Araneae: Gradungulidae) 新西兰奇爪蜘蛛的综合分类挑战了Pianoa和Gradungula的单一类型(蜘蛛目:gradungulia科)
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-26 DOI: 10.1111/syen.70006
Peter Michalik, Cor J. Vink, Martin J. Ramírez, Tim M. Dederichs, Phil J. Sirvid, Stephen M. Pawson, Danilo Harms

The enigmatic spider family Gradungulidae, endemic to Australia and New Zealand, exhibits a combination of morphological characteristics from both modern and early branching lineages. These spiders are rare, challenging to collect, and not well documented, with only 18 described species across seven genera. This study presents the first comprehensive review of the gradungulid fauna in New Zealand, utilising extensive field sampling, molecular phylogenetics, and high-resolution imaging. Previously, this fauna was understood to comprise three monotypic genera: Gradungula, Pianoa and Spelungula. However, we discovered an unexpected diversity of gradungulids in the northern region of New Zealand's South Island, both genetically and taxonomically. This led to the identification of several new candidate species, including Gradungula kahurangi, sp. nov. and Pianoa civis, sp. nov., which are formally described from adult males. Despite high diversity in the north of the South Island, these genera exhibit notable differences in their biogeographical distribution: the forest-dwelling Pianoa and cave-inhabiting Spelungula are climatic relicts with limited distribution ranges and poor dispersal capabilities, whereas Gradungula sorenseni shows a widespread distribution extending to the southernmost region of the South Island. Overall, this study establishes a significant framework for conservation biology concerning some of New Zealand's most iconic yet rare spiders. Additionally, revised and expanded diagnoses of male genitalia for the New Zealand genera are presented.

澳大利亚和新西兰特有的神秘蜘蛛家族Gradungulidae显示了现代和早期分支谱系的形态特征的结合。这些蜘蛛很罕见,很难收集,也没有很好的文献记录,只有7属18种被描述的蜘蛛。本研究首次全面回顾了新西兰的gradungulid动物群,利用广泛的野外采样、分子系统发育和高分辨率成像。以前,这个动物群被认为包括三个单型属:Gradungula, Pianoa和Spelungula。然而,我们在新西兰南岛北部地区发现了一种意想不到的多样性,无论是遗传上还是分类学上。这导致了几个新的候选物种的鉴定,包括Gradungula kahurangi, sp. 11 .和Pianoa civis, sp. 11 .,它们被正式描述为来自成年雄性。尽管在南岛北部具有较高的多样性,但这些属在生物地理分布上存在显著差异:栖息于森林的Pianoa和栖息于洞穴的Spelungula是气候遗迹,分布范围有限,扩散能力差,而Gradungula sorenseni则分布广泛,延伸至南岛最南端。总的来说,这项研究建立了一个关于新西兰一些最具标志性但罕见的蜘蛛的保护生物学的重要框架。此外,修订和扩大诊断的男性生殖器为新西兰属提出。
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引用次数: 0
Integrative taxonomy unravels the true identity of Linnaeus' Termes fatalis (Isoptera: Termitidae), the source of termites' name 综合分类学揭示了Linnaeus' Termes fatalis(等翅目:白蚁科)的真实身份,白蚁名称的来源
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-24 DOI: 10.1111/syen.70016
Nicolas Fontaine, Simon Hellemans, Natan Horáček, Jan Křivánek, Johanne Timmermans, Nicolas Kaczmarek, Esra Kaymak, Menglin Wang, Rudolf H. Scheffrahn, Thomas Bourguignon, Robert Hanus, Denis Fournier, Yves Roisin

The identity of Termes fatalis Linnaeus, the species that gave termites their name, is still controversial since recent molecular and chemical studies showed that at least two different taxa match its description. This paper aims to resolve this uncertainty and provide an unambiguous characterization of the type species of the genus Termes. We collected colonies matching the description of T. fatalis in French Guiana, compared the morphology of the different castes with type specimens of the Termes species reported from the northern Neotropics, sequenced their mitochondrial genomes, analyzed the chemical composition of cuticular hydrocarbons in workers and defensive secretions in soldiers. Our phylogeny revealed that the current definition of T. fatalis encompasses three distinct taxa, distinguished by morphological details, the chemistry of cuticular hydrocarbons, and defensive compounds. One species morphologically matches T. fatalis, while another one matches T. panamaensis (Snyder) and T. medioculatus Emerson, which cannot be distinguished and may be synonyms. The third species, herein described as T. incognitus sp. nov., is new to science.

白蚁的名字来源于致命白蚁(Termes fatalis Linnaeus),但它的身份仍然存在争议,因为最近的分子和化学研究表明,至少有两个不同的分类群与白蚁的描述相匹配。本文旨在解决这一不确定性,并提供一个明确的表征属的模式种。我们在法属圭亚那收集了符合描述的T. fatalis菌落,将不同种姓的形态与新热带北部报道的Termes物种的模式标本进行了比较,测序了它们的线粒体基因组,分析了工蚁表皮碳氢化合物的化学成分和士兵的防御分泌物。我们的系统发育表明,目前的定义包括三个不同的分类群,由形态学细节、表皮碳氢化合物化学和防御化合物区分。一种形态与T. fatalis相匹配,另一种形态与T. panamaensis (Snyder)和T.平庸atus Emerson相匹配,两者无法区分,可能是同义词。第三种,在这里被称为T. incognitus sp. nov.,是科学上的新物种。
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引用次数: 0
Phylogenomic insights into helmet evolution in neotropical treehoppers (Hemiptera: Membracidae): Conserved morphological complexity across five subfamilies 新热带树跳虫头盔进化的系统基因组学研究(半翅目:膜蚁科):五个亚科的保守形态复杂性
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-24 DOI: 10.1111/syen.70014
Ali Milanca Gutiérrez Aguilar, Esteban Alexis Vera Ortiz, Jorge Adilson Pinedo Escatel, Daniel Piñero, Marisol De-la-Mora Curiel

We utilized genomic data from 2539 nuclear loci (580,110 aligned nucleotides) to investigate phylogenetic relationships among selected treehopper lineages (Hemiptera: Membracidae), with a focus on the complexity of helmet shape. Although our sampling does not yet encompass all subfamilies, the dataset provides dense genomic coverage and a strong phylogenetic signal, resulting in well-resolved trees with robust support across nodes. Our analyses reveal that similar helmet morphologies are more common among closely related taxa—especially within genera, followed by tribes and, to a lesser extent, subfamilies—suggesting evolutionary conservatism in pronotal complexity. The helmet shape was found to be phylogenetically conserved and statistically significant across all taxonomic levels examined, showing a strong phylogenetic signal. These findings support previously proposed clades and reinforce the monophyly of major lineages (e.g., Centrotinae + Nicomiinae, Membracinae + Darninae + Similiinae), highlighting the power of UCE-derived nuclear data for resolving relationships within Membracidae. Furthermore, the observed patterns in helmet shape variation also provide evidence for the evolution of pronotal modularity across lineages.

我们利用2539个核位点(580,110个对齐的核苷酸)的基因组数据,研究了选择的树跳谱系(半翅目:膜科)之间的系统发育关系,重点研究了头盔形状的复杂性。虽然我们的采样尚未涵盖所有亚科,但数据集提供了密集的基因组覆盖和强大的系统发育信号,从而产生具有跨节点强大支持的分辨率良好的树。我们的分析表明,相似的头盔形态在密切相关的分类群中更为常见,尤其是在属中,其次是部落,亚科的程度较低,这表明头部复杂性的进化保守性。发现头盔形状在系统发育上是保守的,在所有分类水平上都具有统计学意义,显示出强烈的系统发育信号。这些发现支持了之前提出的进化分支,并加强了主要谱系的单一性(例如,Centrotinae + Nicomiinae, Membracinae + Darninae + Similiinae),突出了uce衍生的核数据在解决Membracidae内部关系方面的力量。此外,观察到的头盔形状变化模式也为不同谱系的前额模块化进化提供了证据。
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引用次数: 0
Diversification and evolution of Hawaiian Megalagrion damselflies (Pinapinao, Odonata: Coenagrionidae) Ka Ho‘omāhuahua a me ke Kumu Ho‘omohala o nā Pinapinao Megalagrion o Hawai‘i (Odonata: Coenagrionidae) 夏威夷巨蜥豆娘(Pinapinao, Odonata: Coenagrionidae)的多样化与进化Ka Ho 'omāhuahua a me ke Kumu Ho 'omohala o nā Pinapinao meggalagrion o hawaii (Odonata: Coenagrionidae)
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-24 DOI: 10.1111/syen.70015
Robert K. Hadfield, Steve Jordan, Dan A. Polhemus, Laura N. Sutherland, Steven L. Peck, John C. Abbott, Paul B. Frandsen, Robert P. Guralnik, Vincent J. Kalkman, Jessica L. Ware, Seth M. Bybee

Hawaiʻi's pinapinao (Megalagrion McLachlan) comprises a radiation of 23 endemic damselfly species within Coenagrionidae. Despite being a unique study system for understanding geology's impacts on evolutionary processes among Odonata, the understanding of these damselflies' temporal, geographic and phylogenetic origins remains incomplete. Testing macroevolutionary hypotheses has been hampered by conflicting topologies. To resolve these uncertainties, we performed phylogenetic analyses including divergence time estimation with 90 nuclear loci (>50 kbp) and 2 mitochondrial loci (>1 kbp), sampling representatives from 37 genera within core Coenagrionidae and 90% of Megalagrion species, including multiple island populations. We used ancestral range estimations, diversification analyses, agent-based simulation modelling and ancestral state reconstruction to infer the group's origin and biogeography and assess traits' roles in diversification. Our findings indicate Megalagrion's ancestor diverged from core Coenagrionidae in the early Eocene (~51 MA) and diversified in the early Miocene (~19 MA), suggesting Megalagrion's MRCA predates Kauaʻi's emergence by 7–21 MY. Diversification analyses suggest a low rate after Megalagrion diverged from Coenagrionidae followed by a sudden increase around 19 MA, and simulation modelling supports extinction playing a significant role. Extant Megalagrion diversity is largely explained by ecological diversification into at least five clades with distinct breeding habitats that likely evolved on Northwestern Hawaiian Islands that are now-sunken seamounts. Speciation continued as descendants dispersed to current Hawaiian Islands as islands emerged. Species breeding in seeps further diversified within the island of Kauaʻi. Our results highlight including geologic changes over time in evolutionary studies and increase understanding of diversification patterns, biogeography and adaptive radiation on islands.

夏威夷的pinapinao (meggalagrion McLachlan)由23个豆娘科特有物种组成。尽管这是一个独特的研究系统,可以理解地质对豆娘进化过程的影响,但对这些豆娘的时间、地理和系统发育起源的理解仍然不完整。检验宏观进化假说一直受到相互冲突的拓扑结构的阻碍。为了解决这些不确定性,我们进行了系统发育分析,包括对90个核位点(>50 kbp)和2个线粒体位点(>1 kbp)的分化时间估计,采样代表了核心Coenagrionidae的37个属和90%的meggalagrion物种,包括多个岛屿种群。我们使用祖先范围估计、多样化分析、基于agent的模拟建模和祖先状态重建来推断群体的起源和生物地理,并评估性状在多样化中的作用。研究结果表明,Megalagrion的祖先在始新世早期(~51 MA)从核心Coenagrionidae中分离出来,并在中新世早期(~19 MA)出现分化,表明Megalagrion的MRCA早于考阿伊岛的出现7-21 MA。多样化分析表明,meggalagrion从Coenagrionidae分化出来后,其多样性较低,随后在19 MA左右突然增加,模拟模型支持灭绝起重要作用。现存巨藻的多样性在很大程度上可以通过至少五个分支的生态多样化来解释,这些分支有不同的繁殖栖息地,可能是在夏威夷西北群岛上进化而来的,这些岛屿现在是沉没的海底山。随着岛屿的出现,后代分散到现在的夏威夷群岛,物种形成继续进行。在考阿伊岛上繁殖的物种进一步多样化。我们的研究结果突出了进化研究中随时间的地质变化,并增加了对岛屿多样化模式、生物地理学和适应性辐射的理解。
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引用次数: 0
Complex evolution and biogeographic history of moss-inhabiting flea beetles from the Taiwan-Ryukyu Island Arc (Coleoptera: Chrysomelidae: Alticini) 台湾-琉球岛弧苔栖蚤类甲虫的复杂进化与生物地理史(鞘翅目:金蝇科:飞蛾科)
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-16 DOI: 10.1111/syen.70013
Albert František Damaška, Martin Fikáček, Haruki Suenaga, Chi-Feng Lee, Jan Náhlovský, Anna Bryjová, Pavel Munclinger

Flightless insects distributed on islands are often characterized by dynamic evolutionary patterns, high endemism, and complex biogeographic histories, imposing challenges for integrative systematics. In this study, we explore the evolutionary history and biogeography of moss-inhabiting flea beetles from the genus Ivalia in the Taiwan-Ryukyu archipelago. Using phylogenomic data from 1649 ddRAD-sequenced nuclear loci with 50,461 single-nucleotide polymorphisms, we uncovered a complex biogeographic history shaped by Late Miocene vicariance and subsequent Pliocene dispersal events from Taiwan. Our results suggest that Ivalia populations on Amamioshima and Taiwan originated through vicariance from a Miocene continental ancestor, whereas other Ryukyu populations represent more recent colonizations from Taiwan. Within Taiwan, we identify an extensive species radiation – the Ivalia uenoi complex – characterized by high species diversity and endemism. Within this complex, we found striking mitonuclear discordance, likely driven by repeated mitochondrial introgression. This discordance led to erroneous species delimitations based on mitochondrial DNA barcoding. In contrast, species delimitation based on nuclear markers was congruent with putative species assignments based on rough morphological examinations. Moreover, we found signs of nuclear introgression events in the ancient history of the Taiwanese Ivalia. Our findings highlight Ivalia as a compelling case of island radiation shaped by dynamic evolutionary processes and underscore the critical role of integrative taxonomic frameworks in insect systematics.

岛屿上无飞昆虫具有动态进化模式、高地方性和复杂的生物地理历史等特点,给综合系统学带来了挑战。摘要本研究以台湾-琉球群岛为研究对象,探讨栖息于苔藓中的伊瓦利亚属蚤甲虫的进化历史与生物地理。利用1649个ddrad序列核位点的系统基因组数据和50,461个单核苷酸多态性,我们揭示了一个复杂的生物地理历史,这是由晚中新世的迁移和随后的上新世从台湾扩散事件形成的。我们的研究结果表明,在奄之岛和台湾的伊瓦利亚种群起源于中新世大陆祖先的迁移,而其他琉球种群则代表了来自台湾的更近的殖民。在台湾,我们发现了一个广泛的物种辐射-伊瓦利亚(Ivalia uenoi)复合体-具有高度的物种多样性和特有性。在这个复合体中,我们发现了惊人的有丝分裂核不一致,可能是由重复的线粒体渗入引起的。这种不一致导致了基于线粒体DNA条形码的错误物种划分。相比之下,基于核标记的种划分与基于粗略形态学检查的推定种分配是一致的。此外,在台湾伊瓦利亚古代史中也发现了核渗透事件的迹象。我们的研究结果突出了伊瓦利亚岛是由动态进化过程形成的岛屿辐射的一个令人信服的案例,并强调了综合分类框架在昆虫系统学中的关键作用。
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引用次数: 0
Complementary genomic and morphological data elucidate the phylogeny of obscure darkling beetles (Blaptinae: Platynotini: Eurynotina) 互补的基因组和形态学数据阐明了鲜为人知的暗甲虫的系统发育(Blaptinae: Platynotini: Eurynotina)
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-11 DOI: 10.1111/syen.70012
Ryan Lumen, Adam M. Rork, Aaron D. Smith, Marcin J. Kamiński
<p>Enigmatic and elusive, the darkling beetle subtribe Eurynotina Koch (Tenebrionidae: Blaptinae) is a southern African endemic composed of nearly 100 species, which prior to this study were classified within 18 genera. Over 75% of the currently recognized species are known exclusively from their small descriptive series, sometimes only by holotypes. The shortage of individual specimens makes the challenges presented by damaged material more problematic for genetic recovery, while also further hindering comprehensive morphological treatment. These shortcomings have led to this group becoming one of the least studied subtribes within the subfamily Blaptinae. To bridge data gaps caused by the scarcity of the material and produce a robust phylogeny of Eurynotina, a combination of different datasets is used: nuclear targeted enrichment (499 loci spanning 155,172 amino acids), mitochondrial (12 loci/2395 amino acids) and morphology (91 characters). All datasets were analysed separately as well as combined, which offered detailed and taxonomically comprehensive phylogenetic topologies including representatives of all known genera. As a result, the following taxonomic changes are proposed to reflect the phylogenetic topologies and introduce stability to the subtribe: <i>Colophonexsula</i> Lumen & Kamiński <b>gen. nov</b>. is erected to receive <i>C. puerilis</i> (Koch) <b>comb. nov</b>.—a species formerly classified within <i>Colophonesthes</i>. Subgenera <i>Anamenederes</i> Koch <b>stat. nov</b>., <i>Menoncotus</i> Koch <b>stat. nov</b>. and <i>Quadroncotus</i> <b>Koch stat. nov</b>. are elevated to generic level. The following generic synonyms are introduced: <i>Stridigula</i> Koch (=<i>Cilioncotus</i> Koch <b>syn. nov</b>.); <i>Eurynotus</i> Kirby (<i>=Biolus</i> Mulsant & Rey <b>syn. nov</b>. <i>=Neosolenopistoma</i> Bouchard & Bousquet <b>syn. nov</b>.). The concept of the genus <i>Oncotus</i> Solier <b>sens. nov</b>. is revised. Additionally, the following new species are described: <i>Psectrapus byki</i> Lumen & Kamiński <b>sp. nov</b>., <i>P. simplicimentulum</i> Lumen & Kamiński <b>sp. nov</b>., <i>Ograbies calumnus</i> Lumen & Kamiński <b>sp. nov</b>. Two new synonyms are introduced at the species level: <i>Oncotus capensis</i> Solier (=<i>Oncotus capicola</i> Koch <b>syn. nov</b>.); <i>Stridigula arguta</i> Koch (=<i>O. humerisetosus</i> Koch <b>syn. nov</b>.). Neotypes are designated for <i>Oncotus farctus</i> Solier, <i>Psectrapus bipartitus</i> Solier and <i>Oncotus capensis</i> Solier to fix the status of <i>Oncotus</i>, <i>Psectrapus</i> and <i>Ograbies</i>, respectively. The following new combinations are introduced as a result of the aforementioned taxonomic decisions: <i>Eurynotus brunoi</i> (Lumen & Kamiński) <b>comb</b>. <b>nov</b>., <i>Menoncotus chaetotaxicus</i> (Koch) <b>comb. nov</b>., <i>M. jokli</i> (Koch) <b>comb. nov</b>., <i>M. sinuatipes</i> (Koch) <b>comb. nov</b>., <i>Quadroncotus irrepertus<
黑甲虫亚族Eurynotina Koch(拟甲科:黑甲虫科)是非洲南部的一种特有种,神秘而难以捉摸,由近100种组成,在本研究之前被划分为18属。在目前已确认的物种中,超过75%的物种仅通过它们的小型描述系列而为人所知,有时仅通过全模模式。个体标本的短缺使得受损材料带来的遗传恢复挑战更加困难,同时也进一步阻碍了综合形态学处理。这些缺点导致这个群体成为亚科中研究最少的亚部落之一。为了弥补由于材料稀缺造成的数据缺口,并产生一个强大的Eurynotina系统发育,使用了不同数据集的组合:核靶向富集(499个位点跨越155,172个氨基酸),线粒体(12个位点/2395个氨基酸)和形态学(91个字符)。所有数据集分别分析和组合分析,提供详细和分类上全面的系统发育拓扑结构,包括所有已知属的代表。因此,我们提出了以下的分类变化来反映系统发育拓扑结构并引入稳定性:Colophonexsula Lumen &; Kamiński gen. 11 .被竖立以接收C. puerilis (Koch) comb。11 .一种,以前属于松香属。将Anamenederes Koch stat. nov.、Menoncotus Koch stat. nov.和Quadroncotus Koch stat. nov.提升为属。介绍了下列属同义词:Stridigula Koch (=Cilioncotus Koch syn11 .);Eurynotus Kirby (=Biolus Mulsant & Rey syn11 .) =Neosolenopistoma Bouchard & Bousquet syn11 .)。修订了水蛭属(Oncotus Solier sens.十一月)的概念。此外,还报道了以下新种:Psectrapus byki Lumen &; Kamiński sp. nov., P. simplicimentulum Lumen &; Kamiński sp. nov., Ograbies calumnus Lumen &; Kamiński sp. nov.两个新种:Oncotus capensis Solier (=Oncotus capicola Koch syn. nov.);赤条曲(= 0。humerisetosus Koch同义词。11月。新型分别被指定为长角Oncotus Solier、两翼Psectrapus Solier和长角Oncotus Solier,以确定Oncotus、Psectrapus和Ograbies的地位。下面的新组合被引入作为上述分类决定的结果:Eurynotus brunoi (Lumen & Kamiński)梳子。11 . chaetotaxicus (Koch)梳子。11 . M. jokli (Koch)梳子。11 . M. sinuatipes (Koch)梳子。11月,科赫梳子。11 .和科氏梳。11 .新概念的芡实属包括21个属。
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引用次数: 0
Unravelling the evolutionary history of grass flies (Diptera: Chloropidae): Phylogeny and divergence time insights 揭示草蝇的进化史(双翅目:绿蝇科):系统发育和分化时间的见解
IF 4.9 1区 农林科学 Q1 ENTOMOLOGY Pub Date : 2025-10-10 DOI: 10.1111/syen.70008
Jiuzhou Liu, Xiaodong Cai, Ruiqing Dong, Ding Yang, Xuankun Li, Xiaoyan Liu

Chloropidae is one of the most species-rich families among acalyptrate flies, comprising approximately 3000 described species across 198 genera worldwide. Using molecular data from six genes (four mitochondrial gene fragments: COI, CytB, 12S rRNA, 16S rRNA and two nuclear gene fragments: 28S rRNA, CAD), we reconstructed the phylogeny of Chloropidae and provided the first time-calibrated phylogeny of the family. Our analyses strongly support the monophyly of Chloropidae and reveal the following inter-subfamily relationships: (Siphonellopsinae + (Chloropinae + (Oscinellinae + Rhodesiellinae))). Notably, Siphonellopsinae monophyly requires further testing as only one representative genus was included. We compared our results of Elachipterini (Oscinellinae) with recent morphological phylogeny. Our results validated Discadrema and Togeciphus as distinct genera. Marginal-likelihood estimations identified a Yule tree prior with 12 unlinked molecular clocks as the optimal BEAST model. Divergence time estimates place the Chloropidae crown age at 43.7 million years ago (Ma), with rapid subfamily diversification occurring around 42 Ma during the mid-Paleogene.

绿蠓科(Chloropidae)是鞘翅类蝇类中种类最丰富的科之一,在世界范围内共有198属,约3000种。利用6个基因的分子数据(4个线粒体基因片段:COI、CytB、12S rRNA、16S rRNA和2个核基因片段:28S rRNA、CAD),我们重建了绿足科的系统发育,并首次提供了该科的时间校准系统发育。结果表明:(Siphonellopsinae + (Chloropinae + (Oscinellinae + Rhodesiellinae)))亚科间的关系为:(Siphonellopsinae +))。值得注意的是,单属Siphonellopsinae需要进一步的测试,因为只包括一个代表性属。我们将我们的结果与最近的形态系统发育进行了比较。我们的结果证实了Discadrema和Togeciphus是不同的属。边际似然估计确定了具有12个未连接分子钟的Yule树先验作为最佳BEAST模型。根据分化时间估计,绿足科树冠年龄为4370万年前(Ma),亚科快速分化发生在古近纪中期的42 Ma左右。
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Systematic Entomology
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