Yathish Ramena, Ram babu Kurapati, Thomas Bosteels, Grace Ramena
Heat shock proteins (HSPs) are highly conserved molecular chaperones that maintain proteostasis under environmental and physiological stress. In aquaculture research, HSP responses have been studied primarily in relation to temperature, salinity, pollutants, and pathogens in juvenile and adult stages, whereas the nutritional regulation of HSP dynamics during early larval development remains poorly resolved. This review synthesizes current knowledge on the functions and regulation of major HSP families (HSP100, HSP90, HSP70, HSP60, and small HSPs) in fish and shellfish larvae and develops mechanistic frameworks linking live feed characteristics to HSP‐mediated stress physiology. Drawing on evidence from Artemia and other crustacean and fish models, we propose a Live Feed–Proteotoxic Stress–HSP (LFP–HSP) axis that integrates feed digestibility, metabolic and oxidative load, and feed‐associated microbiota as key drivers of HSP induction and innate immune function. We further describe ROS–HSP–innate immunity crosstalk and introduce the concept of HSP‐conditioned resilience, whereby controlled, diet‐mediated HSP induction enhances larval tolerance to subsequent husbandry stressors and pathogen challenge. Comparative analysis of commonly used live feeds, including Artemia, rotifers, Moina, Daphnia, and copepods, indicates that differences in nutrient composition, structural complexity, and microbial associations generate distinct HSP expression profiles and stress phenotypes in consuming larvae. Finally, we discuss the application of HSP‐based biomarkers for live feed evaluation, larval quality assessment, and the development of feeding strategies that minimize chronic cellular stress while maximizing robustness in hatchery production of fish and shrimp.
{"title":"Heat Shock Proteins in Aquatic Larvae: Nutritional and Live Feed Modulation of Chaperone‐Mediated Stress Physiology in Fish and Shellfish","authors":"Yathish Ramena, Ram babu Kurapati, Thomas Bosteels, Grace Ramena","doi":"10.1111/raq.70146","DOIUrl":"https://doi.org/10.1111/raq.70146","url":null,"abstract":"Heat shock proteins (HSPs) are highly conserved molecular chaperones that maintain proteostasis under environmental and physiological stress. In aquaculture research, HSP responses have been studied primarily in relation to temperature, salinity, pollutants, and pathogens in juvenile and adult stages, whereas the nutritional regulation of HSP dynamics during early larval development remains poorly resolved. This review synthesizes current knowledge on the functions and regulation of major HSP families (HSP100, HSP90, HSP70, HSP60, and small HSPs) in fish and shellfish larvae and develops mechanistic frameworks linking live feed characteristics to HSP‐mediated stress physiology. Drawing on evidence from Artemia and other crustacean and fish models, we propose a Live Feed–Proteotoxic Stress–HSP (LFP–HSP) axis that integrates feed digestibility, metabolic and oxidative load, and feed‐associated microbiota as key drivers of HSP induction and innate immune function. We further describe ROS–HSP–innate immunity crosstalk and introduce the concept of HSP‐conditioned resilience, whereby controlled, diet‐mediated HSP induction enhances larval tolerance to subsequent husbandry stressors and pathogen challenge. Comparative analysis of commonly used live feeds, including Artemia, rotifers, Moina, Daphnia, and copepods, indicates that differences in nutrient composition, structural complexity, and microbial associations generate distinct HSP expression profiles and stress phenotypes in consuming larvae. Finally, we discuss the application of HSP‐based biomarkers for live feed evaluation, larval quality assessment, and the development of feeding strategies that minimize chronic cellular stress while maximizing robustness in hatchery production of fish and shrimp.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"31 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147506820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Olivia Spiliopoulos, Sunil Kadri, Michelle Sinclair, Myriam Vanderzwalmen, Culum Brown
Aquaculture is the fastest growing food production sector globally, comprising freshwater and marine species reared under highly variable farming contexts, ranging from extensive earthen ponds to intensive recirculating and sea-based systems. Together with growth, production has also intensified, and the welfare of fish farmed in these systems has thus gained increased recognition as an essential contributor to sustainability of aquaculture. Environmental enrichment has emerged as a promising welfare management tool to improve fish welfare and deliver potential production benefits by promoting species-appropriate behaviour and reducing chronic stress; however, its effective implementation remains highly context dependent. This review synthesises current knowledge on environmental enrichment across five categories: Physical, Sensory, Dietary, Occupational, and Social, to evaluate their potential to produce measurable changes in physiological and behavioural indicators of welfare. Enrichment strategies are further assessed for their practicality and feasibility, identifying areas where enrichment is already integrated into aquaculture and where further innovation is required. To guide implementation, a goal-oriented framework is proposed that outlines a stepwise process for aligning welfare objectives with appropriate enrichment strategies while considering species, system, and operational contexts. This combined approach reframes environmental enrichment from a peripheral addition to an integrated component of welfare management in aquaculture.
{"title":"Environmental Enrichment in Aquaculture: Linking Welfare Goals to Practical Applications","authors":"Olivia Spiliopoulos, Sunil Kadri, Michelle Sinclair, Myriam Vanderzwalmen, Culum Brown","doi":"10.1111/raq.70142","DOIUrl":"https://doi.org/10.1111/raq.70142","url":null,"abstract":"Aquaculture is the fastest growing food production sector globally, comprising freshwater and marine species reared under highly variable farming contexts, ranging from extensive earthen ponds to intensive recirculating and sea-based systems. Together with growth, production has also intensified, and the welfare of fish farmed in these systems has thus gained increased recognition as an essential contributor to sustainability of aquaculture. Environmental enrichment has emerged as a promising welfare management tool to improve fish welfare and deliver potential production benefits by promoting species-appropriate behaviour and reducing chronic stress; however, its effective implementation remains highly context dependent. This review synthesises current knowledge on environmental enrichment across five categories: Physical, Sensory, Dietary, Occupational, and Social, to evaluate their potential to produce measurable changes in physiological and behavioural indicators of welfare. Enrichment strategies are further assessed for their practicality and feasibility, identifying areas where enrichment is already integrated into aquaculture and where further innovation is required. To guide implementation, a goal-oriented framework is proposed that outlines a stepwise process for aligning welfare objectives with appropriate enrichment strategies while considering species, system, and operational contexts. This combined approach reframes environmental enrichment from a peripheral addition to an integrated component of welfare management in aquaculture.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"125 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147478094","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Grouper fish (family Serranidae) are a group of fish with high ecological and economic value in the global fishing industry and is generally protogynous (from female to male). Sexual reversal process is a complex biological mechanism that involves remodeling the gonad, requiring simultaneous coordination among various genes and molecular pathways. Transcriptome analysis has become an important approach to understanding the basic mechanisms of various biological processes. As contained in this paper, data were synthesized from the findings of RNA‐seq‐based transcriptomic studies that reveal key genes and pathways, such as foxl2 , Cyp19a1a , DMRT1 , Sox9 , AMH , and the HPG axis in gonadal differentiation and sexual transition in grouper fish. Although most of the data are descriptive and come from the bulk RNA‐seq approach, these findings provide consistent molecular insights into the mechanisms of reproductive regulation. One of the approaches that is now widely used is RNA‐seq‐based transcriptome analysis through NGS technology. This technology enables the development of reproductive biomarkers, detailed gene expression analysis, sex selection strategies, identification of critical molecular pathways, identification of key genes, as well as gene‐based approaches to support cultivation and conservation efficiency. This review emphasizes the role of RNA‐seq as a fundamental tool in building the scientific foundation for the study of grouper fish reproduction, with possible implications including more effective reproductive management, improved breeding techniques, the implementation of genetic therapies, increasing aquaculture productivity, and species conservation and recovery.
{"title":"Transcriptome RNA Sequencing Analysis Provides Novel Insights Into Reproduction and Gonadal Development in Grouper Fish","authors":"Silvana Rahayu, Kwaku Amoah, Yu Huang, Jia Cai, Melati Sukma, Huapu Chen, Mouyan Jiang","doi":"10.1111/raq.70140","DOIUrl":"https://doi.org/10.1111/raq.70140","url":null,"abstract":"Grouper fish (family Serranidae) are a group of fish with high ecological and economic value in the global fishing industry and is generally protogynous (from female to male). Sexual reversal process is a complex biological mechanism that involves remodeling the gonad, requiring simultaneous coordination among various genes and molecular pathways. Transcriptome analysis has become an important approach to understanding the basic mechanisms of various biological processes. As contained in this paper, data were synthesized from the findings of RNA‐seq‐based transcriptomic studies that reveal key genes and pathways, such as <jats:italic>foxl2</jats:italic> , <jats:italic>Cyp19a1a</jats:italic> , <jats:italic>DMRT1</jats:italic> , <jats:italic>Sox9</jats:italic> , <jats:italic>AMH</jats:italic> , and the HPG axis in gonadal differentiation and sexual transition in grouper fish. Although most of the data are descriptive and come from the bulk RNA‐seq approach, these findings provide consistent molecular insights into the mechanisms of reproductive regulation. One of the approaches that is now widely used is RNA‐seq‐based transcriptome analysis through NGS technology. This technology enables the development of reproductive biomarkers, detailed gene expression analysis, sex selection strategies, identification of critical molecular pathways, identification of key genes, as well as gene‐based approaches to support cultivation and conservation efficiency. This review emphasizes the role of RNA‐seq as a fundamental tool in building the scientific foundation for the study of grouper fish reproduction, with possible implications including more effective reproductive management, improved breeding techniques, the implementation of genetic therapies, increasing aquaculture productivity, and species conservation and recovery.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"10 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147447659","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gourab Chowdhury, Josephine Nocillado, Abigail Elizur, Scott F. Cummins, Tomer Ventura
Over the past four decades, substantial research has investigated the regulation of ovarian maturation and spawning in the black tiger prawn (Penaeus monodon). In this species, female reproduction is strongly suppressed by gonad-inhibiting hormone (GIH) released from the eyestalk, making eyestalk ablation (ESA) the most widely adopted spawning-induction strategy in aquaculture. Despite its effectiveness, the endogenous mechanisms that naturally overcome GIH-mediated inhibition remain poorly understood, and only a limited number of stimulatory factors have been identified. As a result, the neuroendocrine and molecular regulation of reproduction throughout the ovarian maturation cycle remains incompletely resolved. Advancing this knowledge is essential for developing effective alternatives to ESA. This review synthesizes current advances in the neuroendocrinology of ovarian maturation in P. monodon, identifies key knowledge gaps, and summarizes molecular approaches evaluated as potential replacements for ESA. Collectively, this review supports ongoing efforts to develop sustainable and animal welfare-friendly spawning-induction strategies for P. monodon aquaculture.
{"title":"Molecular and Endocrine Regulation of Ovarian Maturation in the Black Tiger Prawn (Penaeus monodon) and Associated Challenges in Its Aquaculture","authors":"Gourab Chowdhury, Josephine Nocillado, Abigail Elizur, Scott F. Cummins, Tomer Ventura","doi":"10.1111/raq.70141","DOIUrl":"https://doi.org/10.1111/raq.70141","url":null,"abstract":"Over the past four decades, substantial research has investigated the regulation of ovarian maturation and spawning in the black tiger prawn (<i>Penaeus monodon</i>). In this species, female reproduction is strongly suppressed by gonad-inhibiting hormone (GIH) released from the eyestalk, making eyestalk ablation (ESA) the most widely adopted spawning-induction strategy in aquaculture. Despite its effectiveness, the endogenous mechanisms that naturally overcome GIH-mediated inhibition remain poorly understood, and only a limited number of stimulatory factors have been identified. As a result, the neuroendocrine and molecular regulation of reproduction throughout the ovarian maturation cycle remains incompletely resolved. Advancing this knowledge is essential for developing effective alternatives to ESA. This review synthesizes current advances in the neuroendocrinology of ovarian maturation in <i>P. monodon</i>, identifies key knowledge gaps, and summarizes molecular approaches evaluated as potential replacements for ESA. Collectively, this review supports ongoing efforts to develop sustainable and animal welfare-friendly spawning-induction strategies for <i>P. monodon</i> aquaculture.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"56 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147439767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cristiane Coimbra de Paula, Yuri Duarte Porto, Vinícius Silva Castro, Érica do Carmo Dias Matos, Adelino Cunha-Neto, Ricardo César Tavares Carvalho, Luciana Kimie Savay-da-Silva, Eduardo Eustáquio de Souza Figueiredo, Tathiana Ferguson Motheo
Salmonella spp. are major foodborne pathogens linked to high morbidity and mortality, and their increasing antimicrobial resistance represents a growing global public health threat. This scoping review followed the PRISMA protocol and included 93 original articles on the microbiological diagnosis and antimicrobial resistance profiles of Salmonella spp. isolated from aquaculture, seafood and related aquatic environments. Studies were retrieved from PubMed, Scopus, SciELO, ScienceDirect, and Web of Science, covering 2004 to 2024. Eligible studies included samples from aquaculture systems, fisheries, seafood products, or related environmental and food-processing sources. Extracted data addressed country of origin, resistance profiles, resistance genes and phenotypes, and multidrug-resistant (MDR) serovars. Abstracts were analyzed using classical lexical statistics, word clouds, similarity graphs, and hierarchical descending classification in R and Iramuteq. Among studies, 42.8% originated from Asia, with the highest publication count in 2021. Textual analysis showed strong associations among the terms “Salmonella”, “isolates”, “resistance”, and “antimicrobials”. Hierarchical classification revealed themes such as “surveillance”, “pathogens in food”, and “One Health”. Tetracycline exhibited the highest resistance rate (83.3%) across studies, and the disk diffusion method was the most frequently used (72%). Commonly reported resistance genes included qnrS (fluoroquinolones), blaTEM-1 (β-lactamases), sul3 (sulfonamides), and dfrA12 (trimethoprim). Virulence genes such as invA, fimA, spvC, and stn were also identified. The most frequently reported MDR serovars were S. Typhimurium and S. Newport. This review highlights the relevance of antimicrobial-resistant Salmonella in aquaculture and reinforces the need for robust monitoring aligned with One Health strategies to ensure safe and sustainable production.
沙门氏菌属是与高发病率和高死亡率有关的主要食源性病原体,其日益增加的抗微生物药物耐药性构成了日益严重的全球公共卫生威胁。本综述遵循PRISMA方案,纳入了93篇关于从水产养殖、海产品和相关水生环境中分离的沙门氏菌的微生物学诊断和耐药谱的原创文章。研究检索自PubMed, Scopus, SciELO, ScienceDirect和Web of Science,涵盖2004年至2024年。符合条件的研究包括来自水产养殖系统、渔业、海产品或相关环境和食品加工来源的样本。提取的数据涉及原产国、耐药概况、耐药基因和表型以及多药耐药(MDR)血清型。在R和Iramuteq中使用经典词汇统计、词云、相似图和分层下降分类对摘要进行分析。在研究中,42.8%来自亚洲,发表数量最多的是2021年。文本分析显示,“沙门氏菌”、“分离物”、“耐药性”和“抗菌剂”之间存在很强的相关性。分层分类揭示了诸如“监测”、“食品中的病原体”和“同一个健康”等主题。四环素耐药率最高(83.3%),使用最多的是纸片扩散法(72%)。通常报道的耐药基因包括qnrS(氟喹诺酮类药物)、blatem1 (β-内酰胺酶)、sul3(磺胺类药物)和dfrA12(甲氧苄啶)。毒力基因如invA、fimA、spvC和stn也被鉴定出来。最常报告的耐多药血清型是鼠伤寒沙门氏菌和新港沙门氏菌。本综述强调了抗微生物沙门氏菌与水产养殖的相关性,并强调需要根据“同一个健康”战略进行强有力的监测,以确保安全和可持续生产。
{"title":"Antimicrobial Resistance in Salmonella Across Aquaculture, Seafood and Related Aquatic Environments: A Scoping Review With Exploratory Textual Analysis","authors":"Cristiane Coimbra de Paula, Yuri Duarte Porto, Vinícius Silva Castro, Érica do Carmo Dias Matos, Adelino Cunha-Neto, Ricardo César Tavares Carvalho, Luciana Kimie Savay-da-Silva, Eduardo Eustáquio de Souza Figueiredo, Tathiana Ferguson Motheo","doi":"10.1111/raq.70136","DOIUrl":"https://doi.org/10.1111/raq.70136","url":null,"abstract":"<i>Salmonella</i> spp. are major foodborne pathogens linked to high morbidity and mortality, and their increasing antimicrobial resistance represents a growing global public health threat. This scoping review followed the PRISMA protocol and included 93 original articles on the microbiological diagnosis and antimicrobial resistance profiles of <i>Salmonella</i> spp. isolated from aquaculture, seafood and related aquatic environments. Studies were retrieved from PubMed, Scopus, SciELO, ScienceDirect, and Web of Science, covering 2004 to 2024. Eligible studies included samples from aquaculture systems, fisheries, seafood products, or related environmental and food-processing sources. Extracted data addressed country of origin, resistance profiles, resistance genes and phenotypes, and multidrug-resistant (MDR) serovars. Abstracts were analyzed using classical lexical statistics, word clouds, similarity graphs, and hierarchical descending classification in R and Iramuteq. Among studies, 42.8% originated from Asia, with the highest publication count in 2021. Textual analysis showed strong associations among the terms “<i>Salmonella</i>”, “isolates”, “resistance”, and “antimicrobials”. Hierarchical classification revealed themes such as “surveillance”, “pathogens in food”, and “One Health”. Tetracycline exhibited the highest resistance rate (83.3%) across studies, and the disk diffusion method was the most frequently used (72%). Commonly reported resistance genes included <i>qnrS</i> (fluoroquinolones), <i>blaTEM-1</i> (β-lactamases), <i>sul3</i> (sulfonamides), and <i>dfrA12</i> (trimethoprim). Virulence genes such as <i>invA, fimA</i>, <i>spvC</i>, and <i>stn</i> were also identified. The most frequently reported MDR serovars were <i>S.</i> Typhimurium and <i>S</i>. Newport. This review highlights the relevance of antimicrobial-resistant <i>Salmonella</i> in aquaculture and reinforces the need for robust monitoring aligned with One Health strategies to ensure safe and sustainable production.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"53 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147383881","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kathy Overton, Tim Dempster, Marco A. Vindas, Frode Oppedal, Luke T. Barrett
Understanding how farmed salmonids sense and respond to their environment is key to securing animal welfare and efficient production. However, hearing has rarely received attention, despite the omnipresence of underwater sound and its potential effects. We describe how and what salmonids hear, and explore how hearing may differ between wild and farmed conspecifics. We then conduct two systematic reviews, to: (1) understand the existing soundscapes experienced by farmed salmonids; and (2) identify potential short- and long-term impacts of sound on salmonid behaviour and physiology. Sound can be measured via pressure changes or particle motion; pressure levels are commonly reported, whilst particle motion is rarely measured due to logistical challenges. Salmonids have an open, physostomous swim bladder, relying primarily on their lateral line to sense sound via particle motion. Because of this, they are most sensitive to low frequencies, with startle responses most apparent between 7 and 400 Hz. Few studies have tested for effects of sound on salmonid physiology, although there is evidence that some sound exposure regimes lead to chronic stress, whilst very loud sounds (e.g., cumulative sound exposure level > 216 dB re 1 μPa2a) can cause fatal injuries. Quantifying salmonid aquaculture soundscapes, their potential welfare impacts, and strategies to mitigate these impacts should form a new frontier in salmonid aquaculture research. We make a series of recommendations, specifically: (1) conduct targeted research to fill knowledge gaps; (2) develop a standardised protocol to measure and report sound in salmonid aquaculture; and (3) apply mitigation strategies to reduce impacts of noise.
了解养殖鲑鱼如何感知和应对环境是确保动物福利和高效生产的关键。然而,尽管水下声音及其潜在影响无处不在,听力却很少受到关注。我们描述了鲑鱼的听觉方式和内容,并探讨了野生和养殖同种鲑鱼的听觉有何不同。然后,我们进行了两个系统的回顾,以:(1)了解养殖鲑科鱼所经历的现有声景;(2)确定声音对鲑鱼行为和生理的潜在短期和长期影响。声音可以通过压力变化或粒子运动来测量;压力水平通常被报道,而由于后勤方面的挑战,很少测量粒子运动。鲑鱼有一个开放的、有生理口的鱼鳔,主要依靠它们的侧线通过粒子运动来感知声音。正因为如此,它们对低频最敏感,在7到400赫兹之间的惊吓反应最明显。很少有研究测试声音对鲑鱼生理的影响,尽管有证据表明一些声音暴露机制会导致慢性应激,而非常大的声音(例如,累积声音暴露水平为216 dB / 1 μPa2a)会造成致命伤害。量化鲑科水产养殖声景观、其潜在的福利影响以及减轻这些影响的策略应成为鲑科水产养殖研究的新前沿。我们提出了一系列建议,具体如下:(1)开展有针对性的研究,填补知识空白;(2)制定一项标准化方案,以测量和报告鲑科水产养殖中的声音;(3)应用缓解策略降低噪声影响。
{"title":"Existing Soundscapes and the Impact of Noise on the Welfare of Farmed Salmonids: A Review","authors":"Kathy Overton, Tim Dempster, Marco A. Vindas, Frode Oppedal, Luke T. Barrett","doi":"10.1111/raq.70139","DOIUrl":"https://doi.org/10.1111/raq.70139","url":null,"abstract":"Understanding how farmed salmonids sense and respond to their environment is key to securing animal welfare and efficient production. However, hearing has rarely received attention, despite the omnipresence of underwater sound and its potential effects. We describe how and what salmonids hear, and explore how hearing may differ between wild and farmed conspecifics. We then conduct two systematic reviews, to: (1) understand the existing soundscapes experienced by farmed salmonids; and (2) identify potential short- and long-term impacts of sound on salmonid behaviour and physiology. Sound can be measured via pressure changes or particle motion; pressure levels are commonly reported, whilst particle motion is rarely measured due to logistical challenges. Salmonids have an open, physostomous swim bladder, relying primarily on their lateral line to sense sound via particle motion. Because of this, they are most sensitive to low frequencies, with startle responses most apparent between 7 and 400 Hz. Few studies have tested for effects of sound on salmonid physiology, although there is evidence that some sound exposure regimes lead to chronic stress, whilst very loud sounds (e.g., cumulative sound exposure level > 216 dB re 1 μPa<sup>2</sup>a) can cause fatal injuries. Quantifying salmonid aquaculture soundscapes, their potential welfare impacts, and strategies to mitigate these impacts should form a new frontier in salmonid aquaculture research. We make a series of recommendations, specifically: (1) conduct targeted research to fill knowledge gaps; (2) develop a standardised protocol to measure and report sound in salmonid aquaculture; and (3) apply mitigation strategies to reduce impacts of noise.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"25 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147329915","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yang Yu, Youji Wang, Kianann Tan, Menghong Hu, Nor Afiqah-Aleng, Melissa Beata Martin, Lihan Zhang, Hanafiah Fazhan, Khor Waiho
The continuous development of high-throughput sequencing technologies has revolutionised the field of food production and agriculture, including aquaculture. In addition to fish, crustaceans play a crucial role in supporting coastal economies and serve as a valuable source of high-quality protein worldwide. Therefore, the prevention and treatment of diseases, especially in commercially valuable crustaceans, are of paramount importance. Among the various parasites affecting crustaceans, rhizocephalan parasites have recently gained widespread attention due to their severe effects on hosts, including moult inhibition, parasitic castration and feminisation, reduction in metabolism and survival, and behavioural changes. This review employs a systematic literature review approach to summarise progress in omics research regarding host-rhizocephalan interactions. The final dataset comprised 12 articles from four rhizocephalan families (Thompsoniidae, Sacculinidae, Polyascidae, and Peltogasterellidae). The review further discusses advances in omics research across five main functional categories: growth and moulting, metabolism, sex differentiation and reproduction, immunity and disease, and population genetics and evolution. Differentially expressed genes, proteins, metabolites, and pathways identified in rhizocephalan-related omics studies serve as a valuable molecular database to understand host responses and rhizocephalan infection strategies. Key factors, including juvenile hormone esterase (JHE), thioredoxin, Kazal-type protease inhibitor (KPI), heat shock proteins (HSP70/HSP90), and cathepsins, are multi-functionally involved in host-rhizocephalan interactions. However, knowledge gaps persist, hindered by limitations in diagnostic tools and data integration. Future directions, such as single-cell sequencing (scRNA-seq), multi-omics approaches, and protein–protein interaction (PPI) networks, offer promise for advancing our understanding of host–parasite dynamics, providing insights for rhizocephalan parasitology control in sustainable crustacean aquaculture health.
{"title":"Understanding the Relationship Between Rhizocephalans and Their Hosts From the Lens of Omics: Implications Towards Crustacean Aquaculture","authors":"Yang Yu, Youji Wang, Kianann Tan, Menghong Hu, Nor Afiqah-Aleng, Melissa Beata Martin, Lihan Zhang, Hanafiah Fazhan, Khor Waiho","doi":"10.1111/raq.70137","DOIUrl":"https://doi.org/10.1111/raq.70137","url":null,"abstract":"The continuous development of high-throughput sequencing technologies has revolutionised the field of food production and agriculture, including aquaculture. In addition to fish, crustaceans play a crucial role in supporting coastal economies and serve as a valuable source of high-quality protein worldwide. Therefore, the prevention and treatment of diseases, especially in commercially valuable crustaceans, are of paramount importance. Among the various parasites affecting crustaceans, rhizocephalan parasites have recently gained widespread attention due to their severe effects on hosts, including moult inhibition, parasitic castration and feminisation, reduction in metabolism and survival, and behavioural changes. This review employs a systematic literature review approach to summarise progress in omics research regarding host-rhizocephalan interactions. The final dataset comprised 12 articles from four rhizocephalan families (Thompsoniidae, Sacculinidae, Polyascidae, and Peltogasterellidae). The review further discusses advances in omics research across five main functional categories: growth and moulting, metabolism, sex differentiation and reproduction, immunity and disease, and population genetics and evolution. Differentially expressed genes, proteins, metabolites, and pathways identified in rhizocephalan-related omics studies serve as a valuable molecular database to understand host responses and rhizocephalan infection strategies. Key factors, including <i>juvenile hormone esterase</i> (<i>JHE</i>), thioredoxin, <i>Kazal-type protease inhibitor</i> (<i>KPI</i>), <i>heat shock proteins</i> (<i>HSP70/HSP90</i>), and <i>cathepsins</i>, are multi-functionally involved in host-rhizocephalan interactions. However, knowledge gaps persist, hindered by limitations in diagnostic tools and data integration. Future directions, such as single-cell sequencing (scRNA-seq), multi-omics approaches, and protein–protein interaction (PPI) networks, offer promise for advancing our understanding of host–parasite dynamics, providing insights for rhizocephalan parasitology control in sustainable crustacean aquaculture health.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"50 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147319803","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alena Calvo, Patrik J. G. Henriksson, E. J. Milner-Gulland, Henry Travers, Joseph Poore
Life cycle assessment (LCA) of shrimp aquaculture is hampered by widely divergent results, with reported impacts varying by more than fiftyfold across key categories. This systematic review of 16 peer-reviewed LCAs provides quantitative evidence that much of this divergence is driven by analytical choices rather than on-farm performance: In this case study covering 37 farming cycles, methodological differences in shrimp LCAs induced larger changes in global warming estimates for identical farm data compared to different farming practices. This issue is compounded by a lack of transparency, with only five of the 16 studies providing sufficient data for full reproducibility. We find that this methodological dominance is amplified by analytical blind spots, as most studies neglect critical environmental pressures such as land use change, biodiversity loss, and antibiotic use. To build a robust and comparable evidence base, we recommend representative studies, specific methodological harmonisation, mandatory inclusion of neglected impact categories, and improved reporting transparency. These improvements are essential for LCA to accurately guide the sector towards more sustainability.
{"title":"The Fragmented Landscape of Shrimp Life Cycle Assessments: Uncovering Methodological Dependence and Analytical Blind Spots","authors":"Alena Calvo, Patrik J. G. Henriksson, E. J. Milner-Gulland, Henry Travers, Joseph Poore","doi":"10.1111/raq.70132","DOIUrl":"https://doi.org/10.1111/raq.70132","url":null,"abstract":"Life cycle assessment (LCA) of shrimp aquaculture is hampered by widely divergent results, with reported impacts varying by more than fiftyfold across key categories. This systematic review of 16 peer-reviewed LCAs provides quantitative evidence that much of this divergence is driven by analytical choices rather than on-farm performance: In this case study covering 37 farming cycles, methodological differences in shrimp LCAs induced larger changes in global warming estimates for identical farm data compared to different farming practices. This issue is compounded by a lack of transparency, with only five of the 16 studies providing sufficient data for full reproducibility. We find that this methodological dominance is amplified by analytical blind spots, as most studies neglect critical environmental pressures such as land use change, biodiversity loss, and antibiotic use. To build a robust and comparable evidence base, we recommend representative studies, specific methodological harmonisation, mandatory inclusion of neglected impact categories, and improved reporting transparency. These improvements are essential for LCA to accurately guide the sector towards more sustainability.","PeriodicalId":227,"journal":{"name":"Reviews in Aquaculture","volume":"247 1","pages":""},"PeriodicalIF":10.4,"publicationDate":"2026-02-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147319441","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}