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From molasses to purified α-ketoglutarate with engineered Corynebacterium glutamicum 利用工程化谷氨酸棒杆菌从糖蜜到纯化的 α-酮戊二酸。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131803
Lars Halle , Daniela Höppner , Marvin Doser , Christian Brüsseler , Jochem Gätgens , Niclas Conen , Andreas Jupke , Jan Marienhagen , Stephan Noack
α-ketoglutarate (AKG) is a valuable dicarboxylic acid with multiple applications in the food, pharmaceutical, and chemical industries. Its chemical synthesis is associated with toxic by-products, low specificity, and high energy input. To create a more environmentally friendly and sustainable alternative, a microbial production process for AKG was developed. Four potential producer strains were generated by metabolic engineering of Corynebacterium glutamicum and characterized on defined glucose/sucrose media as well as molasses, a side stream from sugar beet processing. While strain C. glutamicum PO6-iolT1 Δgdh ΔgltB mscCG’ ΔodhA was not able to grow on defined media it outperformed all predecessor variants on molasses. Successful scale-up into a fed-batch bioreactor process with molasses yielded 96.2 g AKG with a conversion yield of 0.64 g g−1. Finally, downstream processing by liquid–liquid extraction with ethyl acetate enabled product purification with an extraction efficiency of 87 % and an AKG purity of > 93 %.
α-酮戊二酸(AKG)是一种珍贵的二羧酸,在食品、制药和化工行业有多种用途。其化学合成过程中会产生有毒副产品、低专一性和高能耗。为了创造一种更环保、更可持续的替代品,我们开发了一种 AKG 微生物生产工艺。通过对谷氨酸棒杆菌(Corynebacteriumglutamicum)进行代谢工程改造,产生了四种潜在的生产菌株,并在特定的葡萄糖/蔗糖培养基以及甜菜加工过程中产生的副产品--糖蜜中进行了鉴定。虽然谷氨酸棒杆菌 PO6-iolT1 Δgdh ΔgltB mscCG' ΔodhA 菌株不能在确定的培养基上生长,但它在糖蜜上的表现优于所有前变种。在糖蜜的喂料批次生物反应器工艺中成功放大后,AKG 的产量为 96.2 克,转化率为 0.64 克-1。最后,通过乙酸乙酯液液萃取法进行下游处理,使产品得以纯化,萃取效率达到 87%,AKG 纯度大于 93%。
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引用次数: 0
High-Temperature stimulation enhances Polyhydroxyalkanoates accumulation in thermophile Aeribacillus pallidus BK1. 高温刺激可增强嗜热菌苍白球杆菌 BK1 的聚羟基烷酸积累。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131816
Wenjing Yang, Shuzhen Li, Shuai Gao, Hui Zhong, Zhiguo He

Polyhydroxyalkanoates (PHAs) are intracellular storage polymers that enhance bacterial resistance in environments. While the role of PHAs regulation in thermophiles under high-temperature stimulation is understudied, this work investigates Aeribacillus pallidus BK1, a thermophile with heat resistance up to 155 °C. Our results showed that A. pallidus's PHAs yield was 1.45 g/L. After 90 °C and 121 °C stimulations, the PHAs yield doubled to 3.33 g/L. The PHAs ratios increased from 35.63 % (60 °C) to 75.46 % (90 °C) and 77.15 % (121 °C). RNA-seq analysis revealed a common strategy of activating glucose transporters to enhance glucose uptake at both temperatures. At 90 °C, A. pallidus BK1 prioritized PHAs accumulation over the TCA cycle. At 121 °C, PHAs production was further enhanced by upregulating monomer polymerization and downregulating acetyl-CoA carboxylase expression. These findings offered valuable insights into the high-temperature defense mechanisms of thermophiles and suggested that A. pallidus BK1 holds promise as a bio-production platform for PHAs production under thermal stimulation.

聚羟基烷酸酯(PHAs)是一种细胞内储存聚合物,可增强细菌在环境中的抵抗力。虽然对嗜热菌在高温刺激下的 PHAs 调节作用研究不足,但本研究对嗜热菌 Aeribacillus pallidus BK1(一种耐热性高达 155 ℃ 的嗜热菌)进行了调查。结果表明,苍白杆菌的 PHAs 产量为 1.45 克/升。经过 90 °C 和 121 °C 的刺激后,PHAs 产量翻了一番,达到 3.33 g/L。PHAs 比率从 35.63 %(60 °C)增加到 75.46 %(90 °C)和 77.15 %(121 °C)。RNA-seq 分析显示,在这两种温度下,激活葡萄糖转运体以提高葡萄糖摄取量是一种共同的策略。90 °C时,A. pallidus BK1优先考虑PHAs的积累,而不是TCA循环。121 °C时,通过上调单体聚合和下调乙酰-CoA羧化酶的表达,PHAs的产生进一步增强。这些发现为了解嗜热菌的高温防御机制提供了宝贵的见解,并表明苍蝇BK1有望成为在热刺激下生产PHAs的生物生产平台。
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引用次数: 0
Engineering and evolution of Yarrowia lipolytica for producing lipids from lignocellulosic hydrolysates 从木质纤维素水解物中生产脂类的亚罗诺脂溶菌的工程和进化。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131806
Sangdo Yook , Anshu Deewan , Leah Ziolkowski , Stephan Lane , Payman Tohidifar , Ming-Hsun Cheng , Vijay Singh , Matthew J. Stasiewicz , Christopher V. Rao , Yong-Su Jin
Yarrowia lipolytica, an oleaginous yeast, shows promise for industrial fermentation due to its robust acetyl-CoA flux and well-developed genetic engineering tools. However, its lack of an active xylose metabolism restricts the conversion of cellulosic sugars to valuable products. To address this, metabolic engineering, and adaptive laboratory evolution (ALE) were applied to the Y. lipolytica PO1f strain, resulting in an efficient xylose-assimilating strain (XEV). Whole-genome sequencing (WGS) of the XEV followed by reverse engineering revealed that the amplification of the heterologous oxidoreductase pathway and a mutation in the GTPase-activating protein gene (YALI0B12100g) might be the primary reasons for improved xylose assimilation in the XEV strain. When a sorghum hydrolysate was used, the XEV strain showed superior xylose consumption and lipid production compared to its parental strain (X123). This study advances our understanding of xylose metabolism in Y. lipolytica and proposes effective metabolic engineering strategies for optimizing lignocellulosic hydrolysates.
脂肪分解酵母(Yarrowia lipolytica)是一种含油酵母,由于其强大的乙酰-CoA 通量和完善的基因工程工具,有望用于工业发酵。然而,由于缺乏活跃的木糖代谢,限制了纤维素糖向有价值产品的转化。为解决这一问题,研究人员在 Y. lipolytica PO1f 菌株上应用了代谢工程和适应性实验室进化(ALE)技术,从而获得了高效的木糖同化菌株(XEV)。对 XEV 进行全基因组测序(WGS)并进行逆向工程后发现,异源氧化还原酶途径的扩增和 GTPase 激活蛋白基因(YALI0B12100g)的突变可能是 XEV 菌株木糖同化能力提高的主要原因。与亲本菌株(X123)相比,当使用高粱水解物时,XEV 菌株表现出更高的木糖消耗量和脂质产量。这项研究加深了我们对Y. lipolytica木糖代谢的了解,并为优化木质纤维素水解物提出了有效的代谢工程策略。
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引用次数: 0
Exploring Porphyridium purpureum and Porphyridium aerugineum as alternative resources for phycobiliprotein production 探索紫卟啉和绿卟啉作为生产藻脂蛋白的替代资源。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131800
Liang Ji , Chenni Zhao , Yulong He , Yuchen Yuan , Zhiwei Hong , Liyun Sun , Jianhua Fan
Microalgae not only fix carbon dioxide, but also represent a promising alternative resource for the production of proteins, lipids, and polysaccharides. This study employed two Porphyridium strains to compare their responses under different light qualities. P. purpureum up-regulated the content (up to 69.37 ± 0.92 mg/g DW) and proportion of phycoerythrin to enhance light absorption, which led to the accumulation of total soluble proteins, neutral lipids and exopolysaccharides under blue light. In contrast, P. aerugineum primarily improved the light energy utilization by increasing phycocyanin levels (up to 81.10 ± 0.60 mg/g DW), resulting in the degradation of neutral lipids and the accumulation of exopolysaccharides. Given the biomass, the highest yields of phycoerythrin (169.61 ± 2.90 mg/L) and phycocyanin (216.92 ± 1.90 mg/L) were achieved by P. purpureum and P. aerugineum cultured under white light, respectively. These findings indicate that Porphyridium can serve as a valuable resource for phycobiliprotein production, with biomolecules synthesis being tightly regulated by light quality.
微藻类不仅能固定二氧化碳,还是生产蛋白质、脂类和多糖的一种很有前途的替代资源。本研究采用了两种卟啉藻菌株,比较它们在不同光照条件下的反应。紫卟啉(P. purpureum)通过提高藻红素的含量(高达 69.37 ± 0.92 mg/g DW)和比例来增强对光的吸收,从而导致总可溶性蛋白质、中性脂质和外多糖在蓝光下的积累。相比之下,铜绿微囊藻主要通过增加藻红素含量(高达 81.10 ± 0.60 mg/g DW)来提高光能利用率,从而导致中性脂质降解和外多糖积累。考虑到生物量,在白光下培养的紫斑卟啉(P. purpureum)和绿斑卟啉(P. aerugineum)分别获得了最高的藻红素(169.61 ± 2.90 mg/L)和藻蓝蛋白(216.92 ± 1.90 mg/L)产量。这些研究结果表明,紫斑藻可作为生产藻胆蛋白的宝贵资源,其生物大分子的合成受光照质量的严格调控。
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引用次数: 0
Polyurethane waste Valorization: A Two-Phase process using Ozonization and Rhodococcus pyridinivorans fermentation for biofertilizer production. 聚氨酯废物的有效利用:利用臭氧和 Rhodococcus pyridinivorans 发酵生产生物肥料的两阶段工艺。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131814
Jose M Orts, Emilia Naranjo, Susana Pina, Angel Orts, Marta Muñoz-Martí, Manuel Tejada, Juan Parrado

A circular economy process has been developed to convert polyurethane waste into biofertilizing microorganisms through a sequential chemical/biological process. The chemical phase involves the complete depolymerization of polyurethane using ozone attack, generating an aqueous extract (OLE) composed of small, bioavailable molecules such as polyols, isocyanate derivatives, and carboxylic acids. The biological phase utilizes OLE for the generation of biomass with biofertilizing functional activity through Rhodococcus pyridinivorans fermentation. The metabolic-proteomic expression during the biodegradation of OLE involves the synthesis of numerous enzymes such as cutinases, hydrolases, proteases, esterases and oxidoreductases, which participate in the degradation of chemical compounds like benzene derivatives, phenols, or plastic polymers. OLE has been converted into microorganisms with biofertilizing properties, including nitrogen fixation, phytohormone production and siderophores. This process contributes to sustainability by diverting polyurethane waste from landfills, reducing the environmental impact of chemical fertilizers and promoting a more sustainable agricultural system.

我们开发了一种循环经济工艺,通过一个连续的化学/生物工艺将聚氨酯废料转化为生物肥料微生物。化学阶段包括利用臭氧攻击使聚氨酯完全解聚,生成由多元醇、异氰酸酯衍生物和羧酸等生物可利用的小分子组成的水提取物(OLE)。生物阶段利用 OLE,通过 Rhodococcus pyridinivorans 发酵产生具有生物肥料功能活性的生物质。在 OLE 的生物降解过程中,新陈代谢-蛋白质组的表达涉及多种酶的合成,如切朊酶、水解酶、蛋白酶、酯酶和氧化还原酶,这些酶参与苯衍生物、酚类或塑料聚合物等化合物的降解。OLE 已转化为具有生物肥料特性的微生物,包括固氮、产生植物激素和嗜苷酶。这一工艺可将聚氨酯废料从垃圾填埋场转移出来,减少化肥对环境的影响,促进农业系统的可持续发展。
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引用次数: 0
Multi-module engineering to guide the development of an efficient L-threonine-producing cell factory 多模块工程学指导高效 L-苏氨酸生产细胞工厂的开发。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131802
Zhenqiang Zhao , Jiajia You , Xuanping Shi , Mengmeng Cai , Rongshuai Zhu , Fengyu Yang , Meijuan Xu , Minglong Shao , Rongzhen Zhang , Youxi Zhao , Zhiming Rao
The rapid development of high-productivity strains is fundamental for bio-manufacture in industry. Here, Multi-module metabolic engineering was implemented to reprogram Escherichia coli, enabling it to rapidly transitioning from zero-producer to hyperproducer of L-threonine. Firstly, the synthesis pathway of L-threonine was rationally divided into five modules, and the rapid production of L-threonine was achieved by optimizing the expression of genes in each module. Subsequently, the capture and fixation of CO2 was enhanced to improve L-threonine yield. Dynamically balancing cell growth and yield by quorum-sensing system resulted in the accumulation of L-threonine up to 34.24 g/L. Ultimately, the THR36-L19 strain accumulated 120.1 g/L L-threonine with 0.425 g/g glucose in a 5 L bioreactor. This is the highest yield for de novo producing L-threonine reported to date and without the use of exogenous inducers and antibiotics in the fermentation process. It also provided an effective technological guidence for the zero-to-overproduction of other chemicals.
快速开发高产菌株是工业生物制造的基础。在此,我们采用多模块代谢工程技术对大肠杆菌进行了重编程,使其能够从L-苏氨酸的零产量快速过渡到高产量。首先,将 L-苏氨酸的合成途径合理划分为五个模块,通过优化每个模块中基因的表达实现 L-苏氨酸的快速生产。随后,加强二氧化碳的捕获和固定,以提高 L-苏氨酸的产量。通过法定人数感应系统对细胞生长和产量进行动态平衡,使 L-苏氨酸的积累达到 34.24 克/升。最终,THR36-L19 菌株在 5 升生物反应器中积累了 120.1 克/升 L-苏氨酸和 0.425 克/克葡萄糖。这是迄今为止所报道的从头生产 L-苏氨酸的最高产量,而且在发酵过程中无需使用外源诱导剂和抗生素。它还为其他化学物质的零到过量生产提供了有效的技术指导。
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引用次数: 0
Effect of substrate concentration on sulfamethoxazole wastewater treatment by osmotic microbial fuel cell: Insight into operational efficiency, dynamic changes of membrane fouling and microbial response. 底物浓度对渗透微生物燃料电池处理磺胺甲噁唑废水的影响:洞察运行效率、膜污垢动态变化和微生物反应。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131805
Hengliang Zhang, Fei Xing, Liang Duan, Qiusheng Gao, Shilong Li, Yang Zhao

To solve the problems of antibiotic pollution, water resources and energy shortage, an osmotic microbial fuel cell (OsMFC) was adopted innovatively to treat antibiotic wastewater containing sulfamethoxazole (SMX), and achieved SMX removal, water production and electricity generation. Substrate concentration was a key factor affecting the performances of OsMFC, which was often ignored by researchers. This study explored the effect of substrate concentration on system performances, clarified the dynamic changes of membrane fouling under different substrate concentrations, and further revealed the response of microbial communities. The results showed that the stable removal efficiency of SMX exceeded 98.8 % due to the efficient interception of forward osmosis (FO) membrane. Compared with the 1.0 g/L NaAc system, the SMX degradation efficiency and maximum output voltage in the 2.0 g/L NaAc system were only increased by 3.9 % and 6.3 %, respectively. However, the initial water flux decreased by 30.1 % in the 7th cycle due to more serious FO membrane fouling. In addition, there were significant differences in the dynamic formation process of FO membrane fouling. Higher substrate concentration increased the relative abundance of Desulfobacterota and Geobacter. Functional prediction analysis showed that increasing substrate concentration promoted carbohydrate metabolism pathways and relative abundance of sulfur respiration functional groups, thereby improving COD and SMX removal rates. However, the biosynthesis of other secondary metabolites was significantly improved, resulting in increased contents of EPS and SMP, which aggravated membrane pollution. Overall, the system performed better when the substrate concentration was 1.0 g/L. This study would provide certain guidance for the performance optimization and membrane fouling mitigation of OsMFC, thereby promoting its practical application in antibiotic wastewater treatment.

为解决抗生素污染、水资源和能源短缺等问题,研究人员创新性地采用渗透微生物燃料电池(Osmotic microbial fuel cell,OsMFC)处理含磺胺甲噁唑(SMX)的抗生素废水,实现了SMX的去除、制水和发电。底物浓度是影响 OsMFC 性能的一个关键因素,而这往往被研究人员所忽视。本研究探讨了底物浓度对系统性能的影响,明确了不同底物浓度下膜结垢的动态变化,并进一步揭示了微生物群落的响应。结果表明,由于正渗透(FO)膜的高效截流作用,SMX 的稳定去除率超过 98.8%。与 1.0 g/L NaAc 系统相比,2.0 g/L NaAc 系统的 SMX 降解效率和最大输出电压仅分别提高了 3.9 % 和 6.3 %。然而,由于 FO 膜污垢更为严重,在第 7 个循环中,初始水通量下降了 30.1%。此外,FO 膜污垢的动态形成过程也存在显著差异。底物浓度越高,脱硫杆菌和地杆菌的相对丰度越高。功能预测分析表明,底物浓度增加会促进碳水化合物代谢途径和硫呼吸功能群的相对丰度,从而提高 COD 和 SMX 去除率。然而,其他次级代谢产物的生物合成明显改善,导致 EPS 和 SMP 含量增加,加剧了膜污染。总体而言,当底物浓度为 1.0 克/升时,该系统的性能更好。这项研究将为 OsMFC 的性能优化和减轻膜污染提供一定的指导,从而促进其在抗生素废水处理中的实际应用。
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引用次数: 0
Robust methane production from anaerobic digestion of maize silage: Feeding control using sliding mode control strategy with Anaerobic Digestion Model N°01 玉米青贮厌氧消化产生稳定的甲烷:利用滑动模式控制策略与厌氧消化模型 N°01 进行进料控制。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-12 DOI: 10.1016/j.biortech.2024.131749
Abdelhani Chaabna, Samia Semcheddine
This paper introduces a robust control approach based on the Sliding Mode Control (SMC) strategy for the Anaerobic Digestion (AD) process. The Anaerobic Digestion Model N°1 (ADM1), the most detailed and comprehensive model in this field, is used as a virtual AD plant. The proposed control scheme is derived from a reduced model. This control law utilizes the state variables of the reduced AM2HN model along with the stoichiometric and kinetic parameters. An interface block between the ADM1 and AM2HN state variables has been designed in a closed-loop configuration. The performance of SMC has been enhanced through the use of a low-pass filter, which completely eliminates chattering, providing smooth, chatter-free dilution rates while preserving the rapid convergence to target methane production (within less than 5 days) even in a noisy environment.
本文针对厌氧消化工艺介绍了一种基于滑动模式控制(SMC)策略的稳健控制方法。我们使用厌氧消化模型 N°01 (ADM1)(最详细、最全面的厌氧消化模型)作为虚拟厌氧消化工厂。我们提出的控制方案源自简化模型。该控制法使用简化版 AM2HN 模型的状态变量以及化学计量和动力学参数。在闭环中设计了 ADM1 和 AM2HN 状态变量之间的接口块。低通滤波器的使用提高了 SMC 的性能,完全消除了颤振,提供了平稳的稀释率(无颤振),同时在嘈杂的环境中快速达到目标甲烷产量(不到 5 天)。
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引用次数: 0
Sustainability assessment of blue hydrogen production through biomass gasification: A comparative analysis of thermal, solar, and wind energy sources. 通过生物质气化生产蓝色氢气的可持续性评估:热能、太阳能和风能的比较分析。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-11 DOI: 10.1016/j.biortech.2024.131798
Yousaf Ayub, Jianzhao Zhou, Tao Shi, Sara Toniolo, Jingzheng Ren

This study evaluated three blue hydrogen production processes - solar-grid powered, wind-powered, and thermal power grid (TPG) - considering the context of Hong Kong, SAR, China. A process sustainability analysis was performed based on energy, economic, and environmental (3E) factors. The energy efficiency analysis indicates that the TPG system is the most energy-efficient with 64% efficiency, followed by the wind power system at 63% and the hybrid solar-grid powered system at 60%. The economic analysis results indicate that the levelized cost of hydrogen (LCH) is 2.165 $/kg for the TPG system, 2.132 $/kg for the hybrid solar-grid powered system, and 2.060 $/kg for the wind power system. The environmental assessment suggests that wind powered are eco-friendly with a unit point total (µPt) of 1.11, compared to the solar-grid 1.50 µPt and TPG system's 1.70 µPt. Therefore, 3E analysis proposes wind powered process is more sustainable for blue H2 production.

本研究以中国香港特别行政区为背景,评估了三种蓝色氢气生产工艺--太阳能电网、风能和热电网(TPG)。根据能源、经济和环境(3E)因素对工艺的可持续性进行了分析。能效分析表明,热电网系统的能效最高,达到 64%,其次是风力发电系统的 63%和太阳能-电网混合供电系统的 60%。经济分析结果表明,TPG 系统的氢气平准化成本(LCH)为 2.165 美元/千克,混合太阳能-电网供电系统为 2.132 美元/千克,风力发电系统为 2.060 美元/千克。环境评估表明,风力发电系统的单位总点 (µPt) 为 1.11,比太阳能电网系统的 1.50 µPt 和 TPG 系统的 1.70 µPt 更为环保。
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引用次数: 0
A comprehensive review on the application of neural network model in microbial fermentation 神经网络模型在微生物发酵中的应用综述。
IF 9.7 1区 环境科学与生态学 Q1 AGRICULTURAL ENGINEERING Pub Date : 2024-11-10 DOI: 10.1016/j.biortech.2024.131801
Jia-Cong Huang , Qi Guo , Xu-Hong Li, Tian-Qiong Shi
The development of high-performance strains and the continuous breakthrough of strain screening technology also pose challenges to downstream fermentation optimization and scale-up. Therefore, neural network models are utilized to optimize the fermentation process to meet the goals of boosting yield or lowering cost, with the use of artificial intelligence technology in conjunction with the peculiarities of the fermentation process. High-performance strains’ yield rise and fermentation process amplification will be sped up with the aid of neural network models. This paper offers a helpful review for anyone interested in state-of-the-art microbial fermentation processes, as it thoroughly reviews the application of neural network models in predicting fermentation yield, optimizing the fermentation process, and monitoring the fermentation process.
高性能菌种的开发和菌种筛选技术的不断突破,也给下游发酵的优化和规模化带来了挑战。因此,利用人工智能技术,结合发酵工艺的特殊性,利用神经网络模型对发酵工艺进行优化,以达到提高产量或降低成本的目的。在神经网络模型的帮助下,高性能菌株的产量提高和发酵过程放大的速度将加快。本文全面回顾了神经网络模型在预测发酵产量、优化发酵过程和监控发酵过程中的应用,为任何对最先进的微生物发酵过程感兴趣的人提供了有益的综述。
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引用次数: 0
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Bioresource Technology
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