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Hybrids models to predict density of methyl diethanolamine 杂交模型预测甲基二乙醇胺的密度
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2026-02-01 DOI: 10.1016/j.cjac.2025.100637
Xun YUAN , Raed H.C. ALFILH , Farag M.A. ALTALBAWY , Suranjana V. MAYANI , Anupam YADAV , Subbulakshmi GANESAN , Mayank KUNDLAS , Aseel SMERAT , Subhashree RAY , Aashna SINHA , Ahmad ABUMALEK , Mukhlisa SOLIYEVA
The density of methyl diethanolamine (MDEA), governed by temperature and pressure, plays a crucial role in optimizing chemical engineering processes, demanding precise predictive models. This research utilizes a gradient boosting decision tree (GBDT) framework, enhanced by four advanced optimization techniques: batch Bayesian optimization (BBO), evolution strategies (ES), Bayesian probability improvement (BPI), and Gaussian processes optimization (GPO). The algorithm is developed utilizing a dataset of 160 experimental samples, with 90% designated for training and 10% for testing, employing temperature and pressure as input parameters to estimate MDEA density. To counter overfitting, k-fold cross-validation is implemented throughout training procedure. The effectiveness of every optimization method is evaluated through computational runtime and performance indicators, including R-squared (R²), mean squared error (MSE), and average absolute relative error (AARE%). Correlation analysis indicates a significant negative relationship between temperature and MDEA density (correlation coefficient: –0.71), while pressure shows a moderate positive association (0.56). Among the optimization strategies, GBDT-BBO yields the highest precision, with an R² of 0.996223 for the training set and 0.982056 for the test set, outperforming other methods. In terms of computational efficiency, GPO proves the fastest, requiring 147.9 seconds, while BBO is the slowest at 199.5 seconds. Sensitivity analysis highlights the effect of every input variable on MDEA density, demonstrating the robustness of data-driven approaches in tackling complex systems. These models provide dependable tools for predicting MDEA density, minimizing requirement for expensive, time-intensive, and labor-heavy experimental methods.
甲基二乙醇胺(MDEA)的密度受温度和压力的影响,在优化化工过程中起着至关重要的作用,需要精确的预测模型。本研究利用梯度增强决策树(GBDT)框架,通过四种先进的优化技术:批贝叶斯优化(BBO)、进化策略(ES)、贝叶斯概率改进(BPI)和高斯过程优化(GPO)进行增强。该算法利用160个实验样本的数据集开发,其中90%用于训练,10%用于测试,使用温度和压力作为输入参数来估计MDEA密度。为了防止过拟合,在整个训练过程中实施了k-fold交叉验证。每种优化方法的有效性通过计算运行时间和性能指标进行评估,包括R平方(R²)、均方误差(MSE)和平均绝对相对误差(AARE%)。相关分析表明,温度与MDEA密度呈显著负相关(相关系数为-0.71),压力与MDEA密度呈中等正相关(相关系数为0.56)。在优化策略中,GBDT-BBO的准确率最高,训练集的R²为0.996223,测试集的R²为0.982056,优于其他方法。在计算效率方面,GPO证明是最快的,需要147.9秒,而BBO是最慢的,需要199.5秒。敏感性分析强调了每个输入变量对MDEA密度的影响,证明了数据驱动方法在处理复杂系统中的鲁棒性。这些模型为预测MDEA密度提供了可靠的工具,最大限度地减少了对昂贵、耗时和费力的实验方法的需求。
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引用次数: 0
Polymer blend functionalization of MnFe₂O₄ nanoparticles: magnetic, structural and photocatalytic impacts MnFe₂O₄纳米颗粒聚合物共混功能化:磁性、结构和光催化影响
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2026-02-01 DOI: 10.1016/j.cjac.2025.100636
Shabnam DAN , Amit CHATTREE , Jishnu NASKAR , Suantak KAMSONLIAN
Superparamagnetic nanocomposites based on poly(methyl methacrylate) (PMMA) and polyethylene glycol (PEG), functionalized on manganese ferrite (MnFe2O4), were synthesized via a facile chemical co-precipitation method to develop an efficient analytical platform for dye adsorption in aqueous systems. The synthesized PMMA-PEG-MF nanoparticles were systematically characterized using particle size analysis (PSA), Fourier-transform infrared spectroscopy (FT-IR), X-ray diffraction (XRD), transmission and scanning electron microscopy (TEM, SEM), energy-dispersive X-ray spectroscopy (EDX), thermogravimetric analysis (TGA), and vibrating sample magnetometry (VSM) to confirm their morphology, crystallinity, thermal stability, and magnetic behaviour. The nanocomposites exhibited a plate-like morphology with an average particle size of ∼70 nm and retained superparamagnetic properties suitable for facile separation. Analytical evaluation of dye removal efficiency of methylene blue (MB) revealed a maximum adsorption efficiency of 77% for PMMA-PEG-MF NPs and 93% for bare MnFe2O4 NPs. These results demonstrate the potential of the PMMA-PEG-MF system as an analytical tool for quantitative assessment and remediation of dye contaminants in water, contributing to environmentally focused analytical methodologies.
采用化学共沉淀法合成了以聚甲基丙烯酸甲酯(PMMA)和聚乙二醇(PEG)为基础的超顺磁性纳米复合材料,并将其功能化在铁酸锰(MnFe2O4)上,为染料在水中的吸附提供了一个高效的分析平台。采用粒度分析(PSA)、傅里叶变换红外光谱(FT-IR)、x射线衍射(XRD)、透射电镜和扫描电镜(TEM、SEM)、能量色散x射线光谱(EDX)、热重分析(TGA)和振动样品磁强计(VSM)等方法对合成的PMMA-PEG-MF纳米粒子进行了系统表征,以确定其形貌、结晶度、热稳定性和磁性能。该纳米复合材料具有片状形态,平均粒径为~ 70 nm,并保留了适合于易于分离的超顺磁性。对亚甲基蓝(MB)染料去除效率的分析评价表明,PMMA-PEG-MF NPs的最大吸附效率为77%,MnFe2O4 NPs的最大吸附效率为93%。这些结果证明了PMMA-PEG-MF系统作为水中染料污染物定量评估和修复的分析工具的潜力,有助于建立以环境为重点的分析方法。
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引用次数: 0
Potential molecular mechanism of qingying decoction against monkeypox via network pharmacology and molecular docking 清婴汤抗猴痘的潜在分子机制:网络药理学与分子对接
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2026-02-01 DOI: 10.1016/j.cjac.2025.100635
Zhuo WANG , Jiandong CHEN , Chunhui DENG

Background

The global spread of monkeypox virus (MPXV) has exposed the scarcity of targeted therapeutic agents, highlighting an urgent medical need. Qingying Decoction (QYD) is one of the traditional Chinese medicine (TCM) formulas recommended for the treatment of monkeypox in the Guidelines for the Treatment of Monkeypox (2022 Edition) issued by the National Health Commission (NHC) of the People’s Republic of China. However, its potential molecular mechanism against MPXV remains unclear, and in-depth exploration is urgently needed to tap its therapeutic potential.

Methods

This study integrated network pharmacology and molecular docking techniques: bioactive components (BICs) of QYD were screened and their targets predicted; MPXV-related targets were obtained from databases and datasets; common targets of QYD and MPXV were identified, followed by GO/KEGG enrichment analysis; a protein-protein interaction (PPI) network was constructed to screen hub targets, and "TCM-BIC-target-pathway" related networks were built; finally, molecular docking was used to verify the binding ability between core components and targets.

Results

A total of 591 BICs of QYD were screened out, and 78 common targets between QYD and MPXV were identified. These common targets were significantly enriched in immune and inflammatory-related pathways such as TLR, TNF, and NF-κB; meanwhile, 15 key BICs and 8 key targets were screened. Molecular docking results showed that core BICs including cis-ferulic acid, ferulic acid methyl ester, and kaempferol had strong binding ability to key targets such as NFKB1 and PTGS2.

Conclusion

QYD exerts synergistic anti-MPXV effects through a "multi-component, multi-target, multi-pathway" mode. Its core components act on key targets to regulate core pathways, with effects of reversing viral immune evasion, blocking viral invasion, and alleviating inflammatory storms, and it outperforms some other traditional Chinese medicine formulas. This study provides a theoretical basis for the development of TCM-based anti-MPXV therapies, but further in vitro and in vivo experiments are needed to verify the efficacy and mechanism of its core components.
猴痘病毒(MPXV)的全球传播暴露了靶向治疗剂的短缺,凸显了迫切的医疗需求。清英汤(QYD)是中华人民共和国国家卫生健康委员会发布的《猴痘治疗指南(2022年版)》中推荐的治疗猴痘的中药配方之一。然而,其抗MPXV的潜在分子机制尚不清楚,迫切需要深入探索其治疗潜力。方法结合网络药理学和分子对接技术,筛选黄芪多糖的生物活性成分,并对其靶点进行预测;从数据库和数据集中获得mpxv相关目标;确定QYD和MPXV的共同靶点,然后进行GO/KEGG富集分析;构建蛋白-蛋白相互作用(PPI)网络筛选枢纽靶点,构建“TCM-BIC-target-pathway”相关网络;最后通过分子对接验证核心组分与靶点的结合能力。结果共筛选出QYD的591个BICs,鉴定出QYD与MPXV的共有靶点78个。这些共同靶点在免疫和炎症相关通路中显著富集,如TLR、TNF和NF-κB;同时筛选出15个重点bic和8个重点靶点。分子对接结果显示,顺阿魏酸、阿魏酸甲酯、山奈酚等核心bic对NFKB1、PTGS2等关键靶点具有较强的结合能力。结论黄芪多糖具有“多组分、多靶点、多途径”的协同抗mpxv作用。其核心成分作用于关键靶点,调控核心通路,具有逆转病毒免疫逃避、阻断病毒入侵、缓解炎症风暴的作用,优于其他一些中药配方。本研究为开发基于中药的抗mpxv疗法提供了理论基础,但其核心成分的疗效和作用机制还需要进一步的体外和体内实验验证。
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引用次数: 0
Advancing inorganic halide perovskite quantum dots: Breakthroughs in green synthesis, stabilization, and sustainability perspectives 推进无机卤化物钙钛矿量子点:在绿色合成、稳定性和可持续性方面的突破
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-01 DOI: 10.1016/j.cjac.2025.100679
Mohammad ABUSHUHEL , Ms.G. PADMAPRIYA , Al-Hasnaawei SHAKER , Subhashree RAY , Kattela CHENNAKESAVULU , Renu SHARMA , Ashish Singh CHAUHAN , Shaima MESSA
Inorganic halide perovskite quantum dots (IHPQDs), such as CsPbX₃ (X = Cl, Br, I), are pivotal for next-generation optoelectronic and photocatalytic technologies due to their tunable optical properties and defect-tolerant structures. This review highlights recent breakthroughs in sustainable synthesis, including ligand-assisted reprecipitation and aqueous methods, reducing environmental impact by up to 50 % in terms of hazardous solvent usage and waste generation, based on life-cycle assessments comparing toxic organic solvents to greener alternatives. Advanced stabilization strategies—compositional engineering, surface passivation, and matrix encapsulation—enhance resilience against moisture, light, and heat, achieving photoluminescence quantum yield retention above 95 % after 30 days under stress conditions of 60 % relative humidity, 100 W cm⁻² UV light, and ambient temperature. Mechanistic insights from advanced characterization (e.g., XRD, XPS) elucidate defect dynamics and lattice stability, guiding further optimization. Future directions focus on green synthesis scalability and novel stabilization, such as self-healing ligands, to meet industrial demands. In addition, this review discusses techno-economic feasibility, regulatory compliance, and life-cycle assessment (LCA) as critical dimensions for sustainable commercialization. By embedding these perspectives alongside synthesis and stabilization strategies, the article provides a holistic roadmap for translating IHPQDs from laboratory breakthroughs into scalable, eco-friendly technologies.
无机卤化物钙钛矿量子点(IHPQDs),如CsPbX₃(X = Cl, Br, I),由于其可调谐的光学性质和光催化结构,是下一代光电和光催化技术的关键。这篇综述强调了可持续合成方面的最新突破,包括配体辅助再沉淀和水相方法,基于对有毒有机溶剂和绿色替代品的生命周期评估,在有害溶剂的使用和废物产生方面,减少了高达50% %的环境影响。先进的稳定策略-组成工程,表面钝化和基质包封-增强对水分,光和热的弹性,在60 %相对湿度,100 W cm⁻²紫外线和环境温度的压力条件下,30天后实现光致发光量子产率保持在95% %以上。高级表征(例如XRD, XPS)的机理见解阐明了缺陷动力学和晶格稳定性,指导了进一步的优化。未来的发展方向是绿色合成、可扩展性和新型稳定性,如自修复配体,以满足工业需求。此外,本文还讨论了技术经济可行性、法规遵从性和生命周期评估(LCA)作为可持续商业化的关键维度。通过将这些观点与合成和稳定策略相结合,本文提供了将IHPQDs从实验室突破转化为可扩展的环保技术的整体路线图。
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引用次数: 0
Immobilization of divinely benzene polymer on silica anchored graphene oxide for the efficient removal of acid yellow 25 and acid black 210 二氧化硅锚定氧化石墨烯固定化神苯聚合物高效去除酸黄25和酸黑210
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-01 DOI: 10.1016/j.cjac.2025.100622
Musa KHAN, Faiz ALI, Mian MUHAMMAD
The renovated Fischer esterification protocol was adopted for the chemical binding of silica particles on the surface of graphene oxide sheets. Divinely benzene polymer was attached to the silica@GO composite by the reversible addition fragmentation chain transfer polymerization. The polymer bound composite was characterized by Brunauer Emmett and Teller (BET/BJH) analysis, X-ray diffraction (XRD), zeta pH and Fourier transform infrared (FTIR) spectroscopy, then evaluated for the removal of acid yellow-25 and acid black-210 with promising results. During the batch adsorption studies maximum adsorption was recorded at pH 3 and 2 for acid yellow 25 and acid black-210, respectively. The qe value for the polymer bound composite towards acid black-210 was found 227.791 mg/g, while that of the acid yellow-25 it was found 113.896 mg/g. The adsorption data of both dyes was following the pseudo 2nd order kinetic model with regression values of 0.9989 and 0.9949 for acid yellow 25 and acid black 210 respectively. In adsorption isothermal study, the adsorption data of acid yellow 25 and acid black 210 is best fitting with the Freundlich model having R2 value of 0.987 and 0.958 for acid black 210 and acid yellow 25, respectively.
采用改进的Fischer酯化工艺,将二氧化硅颗粒在氧化石墨烯片表面进行化学结合。通过可逆加成破碎链转移聚合,将神苯聚合物吸附在silica@GO复合材料上。采用BET/BJH分析、x射线衍射(XRD)、zeta pH和傅里叶变换红外光谱(FTIR)对聚合物结合的复合材料进行了表征,并对其对酸性黄-25和酸性黑-210的去除率进行了评价。在批量吸附研究中,酸性黄25和酸性黑210分别在pH为3和2时吸附量最大。聚合物结合复合材料对酸性黑-210的qe值为227.791 mg/g,对酸性黄-25的qe值为113.896 mg/g。两种染料对酸性黄25和酸性黑210的吸附均符合拟二级动力学模型,回归值分别为0.9989和0.9949。在等温吸附研究中,酸黄25和酸黑210的吸附数据最符合Freundlich模型,酸黑210和酸黄25的R2分别为0.987和0.958。
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引用次数: 0
Mechanisms of kaempferol treatment for oral submucosal fibrosis: A network pharmacology and molecular docking study 山奈酚治疗口腔黏膜下纤维化的机制:网络药理学和分子对接研究
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-01 DOI: 10.1016/j.cjac.2025.100618
Shuxin FU , Fangping DENG , Dandan LI , Shuo QI , Xiaoyi ZHANG , Hong ZOU , Qun Li
Through integrated network pharmacology and molecular docking techniques, this investigation elucidated the potential mechanisms of kaempferol in treating oral submucosal fibrosis. Related genes were screened in the appropriate databases, and there were 94 cross-gene overlaps between 518 target proteins of kaempferol and 969 potential targets of oral submucous fibrosis. 10 core targets were pinpointed by analyzing the PPI network topology of 94 targets, including MMP9, IL6, TNF, ALB, and so on. GO and KEGG enrichment analysis demonstrated that kaempferol affects oral submucosal fibrosis mainly by mediating TNF, IL-17, TLR, PI3K-AKT, and other pathways. Molecular docking utilizing AutoDock Vina 4.2 software indicated that kaempferol had strong binding energy to all core targets. Kaempferol treats oral submucosal fibrosis by targeting multiple key target genes and regulating TNF, IL-17, and other signaling pathways, reflecting the multi-target, multi-pathway nature of kaempferol's antifibrotic effects.
本研究通过综合网络药理学和分子对接技术,阐明山奈酚治疗口腔黏膜下纤维化的潜在机制。在合适的数据库中筛选相关基因,山奈酚的518个靶蛋白与口腔黏膜下纤维化的969个潜在靶点存在94个交叉基因重叠。通过分析94个靶点的PPI网络拓扑,确定了10个核心靶点,包括MMP9、IL6、TNF、ALB等。GO和KEGG富集分析表明山奈酚主要通过介导TNF、IL-17、TLR、PI3K-AKT等途径影响口腔粘膜下纤维化。利用AutoDock Vina 4.2软件进行分子对接,发现山奈酚对所有核心靶点都具有很强的结合能。山奈酚通过靶向多个关键靶基因,调控TNF、IL-17等信号通路治疗口腔黏膜下纤维化,体现了山奈酚抗纤维化作用的多靶点、多通路性质。
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引用次数: 0
Gexia Zhuyu decoction alleviates carbon tetrachloride-induced hepatic fibrosis in mice: Mechanistic insights from integrated network analysis and experimental validation analysis 葛夏竹骨汤减轻四氯化碳所致小鼠肝纤维化:综合网络分析和实验验证分析的机制见解
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-01 DOI: 10.1016/j.cjac.2025.100610
Zhehui XU , Linlang HUANG , Chen ZHU , Shilu KOU , Wenya XING , Xiaoyu SU , Ying LIU , Shibing CAO , Zhengming DENG
Gexia Zhuyu Decoction (GXZYD) is a classic Chinese medicine formula with significant efficacy in alleviating fibrosis. Remarkably, despite the established link between anti - angiogenesis, the PI3K/AKT signaling pathway, and the advancement of hepatic fibrosis (HF), it is still uncertain whether GXZYD achieves its anti - fibrotic effects by regulating these pathways. This study aimed to verify the potential mechanism by which GXZYD fights against HF through network analysis and experiments. The results of the network analysis analyses indicated that phosphatidylinositol 3-kinase/protein kinase B (PI3K/AKT) signaling is a pivotal regulatory pathway through which GXZYD alleviates HF and may exhibit anti-angiogenesis properties and reduce liver damage and collagen fiber formation. First, the efficacy of GXZYD in the treatment of early - stage heart failure was established. Subsequently, during the subsequent analysis, it was found that GXZYD effectively alleviated liver injury and reduced the accumulation of collagen, with an effect similar to that of colchicine. This research noted a decrease in the quantities of alanine aminotransferase (ALT) and aspartate aminotransferase (AST), along with a reduction in the levels of type IV collagen (Col - IV), laminin (LN), hyaluronic acid (HA), and procollagen type III (PC - III). Further analysis using pathological staining revealed improvements in hepatocellular necrosis and fibrous septa formation. Additionally, GXZYD enhanced the expression of CD31 and LYVE1 in relevant blood vessels and reduced the fenestration of liver sinusoidal endothelial cells (LSECs). The utilization of the agonist 740Y-P negated the protective impacts of GXZYD on anti - angiogenesis, the lessening of liver impairment, and the suppression of liver collagen accumulation. GXZYD mitigated early - stage liver fibrosis by impeding the PI3K/AKT signaling pathway, minimizing liver damage, regulating collagen deposition, and rejuvenating sinusoidal capillaries.
葛夏竹骨汤是一种具有显著缓解纤维化疗效的经典中药方剂。值得注意的是,尽管抗血管生成、PI3K/AKT信号通路与肝纤维化(HF)进展之间建立了联系,但GXZYD是否通过调节这些通路实现其抗纤维化作用仍不确定。本研究旨在通过网络分析和实验验证GXZYD抗HF的潜在机制。网络分析结果表明,磷脂酰肌醇3-激酶/蛋白激酶B (PI3K/AKT)信号通路是GXZYD缓解HF的关键调控通路,可能具有抗血管生成特性,减少肝损伤和胶原纤维形成。首先,确定了中药加味散治疗早期心力衰竭的疗效。随后,在后续分析中发现,GXZYD能有效减轻肝损伤,减少胶原的积累,其作用与秋水仙碱相似。该研究注意到丙氨酸转氨酶(ALT)和天冬氨酸转氨酶(AST)的数量减少,以及IV型胶原蛋白(Col - IV)、层粘连蛋白(LN)、透明质酸(HA)和III型前胶原蛋白(PC - III)水平的降低。进一步的病理染色分析显示肝细胞坏死和纤维间隔形成的改善。此外,GXZYD还能增强相关血管中CD31和LYVE1的表达,降低肝窦内皮细胞(LSECs)的开窗率。使用激动剂740Y-P后,GXZYD的抗血管生成、减轻肝损害和抑制肝胶原积累的保护作用被否定。GXZYD通过阻断PI3K/AKT信号通路、减少肝损伤、调节胶原沉积和恢复窦状毛细血管来减轻早期肝纤维化。
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引用次数: 0
Expanding insights on immune cells and insomnia: A Mendelian randomization study using updated data 扩展免疫细胞和失眠的见解:使用最新数据的孟德尔随机化研究
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-01 DOI: 10.1016/j.cjac.2025.100608
Xu ZHANG , Shasha ZHANG , Shanzhong TAN , Lizhong GUO
Insomnia is a prevalent sleep disorder associated with cognitive impairments, mood disturbances, and increased risks of cardiovascular and psychiatric conditions. Emerging evidence suggests that immune dysregulation contributes significantly to insomnia pathogenesis; however, the causal roles of specific immune cell phenotypes remain unclear. We employed a bidirectional two-sample Mendelian randomization (MR) approach to assess causal associations between 731 immune cell traits and insomnia risk. Genetic instrumental variables for immune phenotypes were derived from genome-wide association studies (GWAS) of 3757 Sardinian participants, and insomnia data were obtained from the FinnGen consortium (Release R10), including 4801 cases and 405229 controls. Primary analyses utilized inverse-variance weighted regression, with sensitivity analyses conducted via MR-Egger, weighted median, and MR-PRESSO methods. After false discovery rate correction, 14 immune cell phenotypes showed significant associations with insomnia. Specifically, elevated levels of activated IgD⁻CD38^bright B cells (OR = 1.043, 95% CI: 1.001–1.088, p = 0.045), CD40⁺CD86⁺ dendritic cells, and CD14⁺ intermediate monocytes were positively associated with insomnia risk, whereas increased CD8 expression on regulatory CD28⁻CD8^bright T cells showed protective effects (OR = 0.918, 95% CI: 0.851–0.990, p = 0.037). Robustness checks revealed minimal pleiotropy, and reverse MR analyses did not detect significant causal effects of insomnia liability on immune traits. These findings clarify a unidirectional causal relationship, highlighting activated B cells and dendritic cells as potential inflammatory mediators involved in insomnia, and regulatory T cell subsets as protective factors. Our results provide novel immunological insights into insomnia and suggest potential targets for therapeutic interventions.
失眠是一种普遍的睡眠障碍,与认知障碍、情绪障碍以及心血管和精神疾病风险增加有关。越来越多的证据表明,免疫失调在失眠发病机制中起着重要作用;然而,特异性免疫细胞表型的因果作用仍不清楚。我们采用双向双样本孟德尔随机化(MR)方法来评估731种免疫细胞特征与失眠风险之间的因果关系。免疫表型的遗传工具变量来自3757名撒丁岛参与者的全基因组关联研究(GWAS),失眠数据来自FinnGen联盟(Release R10),包括4801例病例和405229例对照。初步分析采用反方差加权回归,敏感度分析采用MR-Egger、加权中位数和MR-PRESSO方法。在错误发现率校正后,14种免疫细胞表型显示与失眠有显著关联。具体来说,IgD - CD38^bright B细胞(OR = 1.043, 95% CI: 1.001-1.088, p = 0.045)、CD40 + CD86 +树突状细胞和CD14 +中间细胞水平升高与失眠风险呈正相关,而CD8在调节性CD28 - CD8^bright T细胞上表达增加具有保护作用(OR = 0.918, 95% CI: 0.851-0.990, p = 0.037)。鲁棒性检查显示最小的多效性,反向MR分析未发现失眠倾向对免疫性状的显著因果影响。这些发现阐明了一种单向的因果关系,强调了活化的B细胞和树突状细胞是参与失眠的潜在炎症介质,而调节性T细胞亚群是保护因子。我们的研究结果为失眠提供了新的免疫学见解,并提出了治疗干预的潜在目标。
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引用次数: 0
Molecular dynamics simulations and reverse docking approaches for identification of novel drug candidates against Aeromonas hydrophila 分子动力学模拟和反向对接方法鉴定抗嗜水气单胞菌的新候选药物
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-01 DOI: 10.1016/j.cjac.2025.100616
Marufatuzzahan Marufatuzzahan , Shovan Mondal , Tanjin Barketullah Robin , Maruf Raihan , Atia Toureen , Md․ Tamzidul Alam , Dilruba Afrin
Aeromonas hydrophila (A. hydrophila) is a deadly pathogen which has the ability to spread disease to mammals, birds, and aquatic animals, resulting in severe zoonotic infections and high mortality rates. The growing prevalence of multidrug resistance among this bacterium has rendered many conventional antibiotics ineffective, emphasizing the critical need for novel therapeutic strategies. Natural compounds are a promising alternative because of their potential efficacy and lower toxicity when compared to synthetic medications. The aim of this study is to identify and evaluate natural metabolites as potential drug candidates against A. hydrophila using computational in silico methods. We assessed 100 plant metabolites for antibacterial activity, specifically targeting sensor histidine kinase (SHK) and UDP proteins that are critical for the pathogen's survival. Apigenin, Withaferin A, Kaempferol, and Norwogenin outperformed the others as pathogen inhibitors. Their binding affinities were compared to the control drug ciprofloxacin, and the top metabolites demonstrated significantly higher binding affinities. Among the top candidates, Withaferin A had a binding energy of −9.8 kcal/mol with SHK protein, which exceeded ciprofloxacin's binding energy of −7.7 kcal/mol. Molecular dynamics simulations confirmed the stability of these complexes, especially Apigenin, which had a low root mean square deviations (RMSD) of 0.3 nm over 100 ns. Additionally, all four metabolites met Lipinski's rule of five, indicating favorable therapeutic-like properties. The toxicity assessment reveals the candidates to be non-toxic, non-irritant, non-allergen and safe for medication. This study opens up possibilities for developing effective treatments for A. hydrophila. However, it is imperative to evaluate in-vivo trials to further analyze the efficiency and toxicity of these compounds.
嗜水气单胞菌是一种致命的病原体,它能够将疾病传播给哺乳动物、鸟类和水生动物,导致严重的人畜共患感染和高死亡率。这种细菌中越来越普遍的多药耐药性使得许多传统抗生素无效,强调了对新治疗策略的迫切需要。与合成药物相比,天然化合物具有潜在的疗效和较低的毒性,是一种很有前途的替代品。本研究的目的是利用计算机方法鉴定和评估天然代谢物作为潜在的抗嗜水单胞杆菌候选药物。我们评估了100种植物代谢物的抗菌活性,特别针对对病原体存活至关重要的传感器组氨酸激酶(SHK)和UDP蛋白。芹菜素、Withaferin A、山奈酚和Norwogenin作为病原体抑制剂的效果优于其他药物。与对照药物环丙沙星的结合亲和力进行比较,顶端代谢物的结合亲和力显著提高。在候选药物中,Withaferin A与SHK蛋白的结合能为−9.8 kcal/mol,超过环丙沙星的结合能−7.7 kcal/mol。分子动力学模拟证实了这些配合物的稳定性,尤其是芹菜素,在100 ns内具有较低的均方根偏差(RMSD)为0.3 nm。此外,所有四种代谢物都符合Lipinski的五项规则,表明有利的治疗样特性。毒性评估表明候选药物无毒、无刺激、无过敏原,可安全用药。这项研究为开发有效的治疗嗜水单胞杆菌开辟了可能性。然而,为了进一步分析这些化合物的效率和毒性,有必要进行体内试验。
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引用次数: 0
A systems perspective on ribavirin-induced hemolytic anemia: From network toxicology to atomic-level simulations 利巴韦林诱导的溶血性贫血的系统视角:从网络毒理学到原子水平模拟
IF 1.3 4区 化学 Q4 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-01 DOI: 10.1016/j.cjac.2025.100672
Xumeng Shi , Shijia Lu , Guangman Zhu , Tianjiao Cui , Shunhang Wu , Mengdan Sang , Yiran Zhen , Xue Yang , Huaying Du , Miaoyan Han , Mengjia Yan , Jinle Wang , Yutong Zhang , Jiying Du

Objective

The molecular mechanisms underlying ribavirin (RBV)-induced hemolytic anemia remain incompletely understood. Current research predominantly addresses individual targets or pathways, lacking a comprehensive integration of multi-target interaction networks. This study employs a combination of network toxicology (NT), multi-scale molecular dynamics (MD) simulation techniques, and in vitro experiments to conduct an in-depth analysis of the multi-target mechanisms responsible for RBV-induced hemolytic anemia. Methods: A multi-scale biological molecular network model was developed utilizing NT. Multi-scale molecular simulations were employed to integrate calculations across various temporal and spatial scales. This approach was complemented by red blood cell hemolysis assays, liquid chromatography-tandem mass spectrometry (LC-MS/MS) quantitative analysis, and circular dichroism (CD) spectroscopy experiments, thereby elucidating the hierarchical patterns of molecular behaviors that contribute to RBV-induced hemolytic anemia across multiple scales. Results: The findings demonstrated that RBV/triphenyl ribavirin (RTP) disrupts the function of the Band 3 protein, inhibits glucose-6-phosphate dehydrogenase (G6PD) activity, induces oxidative stress, and triggers apoptotic pathways, ultimately resulting in the rupture of red blood cells. The integration of multi-scale data corroborated the “drug accumulation-oxidative stress-cell death” three-stage damage model, offering a quantitative characterization framework from atomic to systemic levels for elucidating the toxicity mechanism of nucleoside analogues. This approach advances the application of analytical toxicology in the evaluation of drug safety.
目的利巴韦林(RBV)致溶血性贫血的分子机制尚不完全清楚。目前的研究主要针对单个靶点或通路,缺乏多靶点相互作用网络的全面整合。本研究采用网络毒理学(network toxicology, NT)、多尺度分子动力学(multi-scale molecular dynamics, MD)模拟技术和体外实验相结合的方法,深入分析rbv诱导溶血性贫血的多靶点机制。方法:利用NT建立了一个多尺度生物分子网络模型,采用多尺度分子模拟方法整合不同时空尺度的计算结果。该方法与红细胞溶血试验、液相色谱-串联质谱(LC-MS/MS)定量分析和圆二色性(CD)光谱实验相结合,从而阐明了rbv诱导的溶血性贫血在多个尺度上的分子行为的层次模式。结果:RBV/triphenyl ribavirin (RTP)可破坏Band 3蛋白功能,抑制葡萄糖-6-磷酸脱氢酶(G6PD)活性,诱导氧化应激,触发凋亡通路,最终导致红细胞破裂。多尺度数据的整合证实了“药物积累-氧化应激-细胞死亡”三阶段损伤模型,为阐明核苷类似物的毒性机制提供了从原子到系统水平的定量表征框架。该方法促进了分析毒理学在药物安全性评价中的应用。
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Chinese Journal of Analytical Chemistry
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