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The Internal Structural Dynamics of Elastin-Like Polypeptide Assemblies by 13C-Direct Detected NMR Spectroscopy
IF 7.4 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-16 DOI: 10.1021/acs.analchem.4c05163
Dörte Brandis, Pavel Kadeřávek, Dennis Kurzbach
Elastin-like polypeptides (ELPs) are biocompatible polymers exhibiting lower critical solution temperature (LCST) behavior, making them valuable in various applications, including drug delivery and tissue engineering. This study addresses the atomistic-level understanding of ELP self-assembly, focusing on their internal structural dynamics. Conventional proton-detected nuclear magnetic resonance (NMR) spectroscopy faces limitations in studying ELP aggregates due to accelerated proton exchange processes, which cause significant resonance broadening. Herein, we show how to overcome this hurdle by using carbon-13-detected NMR. This method mitigates issues related to amide proton exchange, allowing for a residue-resolved view of the internal configuration of ELP aggregates. With this method, we record residue-resolved 15N relaxation rates, revealing three features. (i) Proline residues within the PGXGV pentapeptide repeats (X being any amino acid except proline) of ELP become motional restricted upon aggregation, indicating their role as interchain contacts. (ii) Pentapeptides with alanine guest residue X display particularly significantly reduced motional freedom upon aggregation. (iii) Even within large ELP aggregates, fast internal dynamics characterize the peptide chains in a way that is reminiscent of condensed liquid phases. The presented study is the first proof of concept that 13C-direct detection is a viable tool to delineate the internal structural dynamics of condensed ELP phases by NMR. It might, thus, help to foster new investigations of their aggregation mechanisms.
{"title":"The Internal Structural Dynamics of Elastin-Like Polypeptide Assemblies by 13C-Direct Detected NMR Spectroscopy","authors":"Dörte Brandis, Pavel Kadeřávek, Dennis Kurzbach","doi":"10.1021/acs.analchem.4c05163","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05163","url":null,"abstract":"Elastin-like polypeptides (ELPs) are biocompatible polymers exhibiting lower critical solution temperature (LCST) behavior, making them valuable in various applications, including drug delivery and tissue engineering. This study addresses the atomistic-level understanding of ELP self-assembly, focusing on their internal structural dynamics. Conventional proton-detected nuclear magnetic resonance (NMR) spectroscopy faces limitations in studying ELP aggregates due to accelerated proton exchange processes, which cause significant resonance broadening. Herein, we show how to overcome this hurdle by using carbon-13-detected NMR. This method mitigates issues related to amide proton exchange, allowing for a residue-resolved view of the internal configuration of ELP aggregates. With this method, we record residue-resolved <sup>15</sup>N relaxation rates, revealing three features. (i) Proline residues within the PGXGV pentapeptide repeats (X being any amino acid except proline) of ELP become motional restricted upon aggregation, indicating their role as interchain contacts. (ii) Pentapeptides with alanine guest residue X display particularly significantly reduced motional freedom upon aggregation. (iii) Even within large ELP aggregates, fast internal dynamics characterize the peptide chains in a way that is reminiscent of condensed liquid phases. The presented study is the first proof of concept that <sup>13</sup>C-direct detection is a viable tool to delineate the internal structural dynamics of condensed ELP phases by NMR. It might, thus, help to foster new investigations of their aggregation mechanisms.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"80 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143427109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
pH-/Viscosity-Activatable NIR Fluorescent Probes via Acceptor Engineering of Hemicyanine Dyes for High-Contrast Bioimaging
IF 7.4 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-15 DOI: 10.1021/acs.analchem.4c05680
Da Feng, Li Guo, Yihan Zhao, Fang Yuan, Lulu Ning, Yuan Guo, Jianjian Zhang
Real-time monitoring of the lysosomal microenvironment using small-molecule probes is critical for understanding the complex interactions between organelles and diseases associated with lysosomal dysfunction. Most traditional fluorescent-dye-based lysosome probes rely on the protonation of the nitrogen atom in the morpholine unit to visualize the lysosomal microenvironment by inhibiting the photoinduced electron transfer (PET) effect. However, these probes often face selectivity issues within the complex cellular microenvironment. For instance, classic hemicyanine dyes (HD) show nonspecific fluorescence responses in the liver due to inappropriate pKa value, leading to low imaging contrast and the risk of false positives. Herein, a series of novel pH/viscosity-activatable, lysosomal-targeted near-infrared (NIR) fluorescent probes were developed by incorporating naphthalimide dye with hemicyanine dyes. These probes exhibit no fluorescence at physiological pH and weak fluorescence under acidic conditions (key 1), with substantial fluorescence activation triggered by abnormal viscosity in pathological tissues (key 2). Notably, NpCy-4 demonstrated a superior signal-to-background ratio (SBR) for cellular imaging and proved effective for real-time in situ diagnosis of acute gastritis.
{"title":"pH-/Viscosity-Activatable NIR Fluorescent Probes via Acceptor Engineering of Hemicyanine Dyes for High-Contrast Bioimaging","authors":"Da Feng, Li Guo, Yihan Zhao, Fang Yuan, Lulu Ning, Yuan Guo, Jianjian Zhang","doi":"10.1021/acs.analchem.4c05680","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05680","url":null,"abstract":"Real-time monitoring of the lysosomal microenvironment using small-molecule probes is critical for understanding the complex interactions between organelles and diseases associated with lysosomal dysfunction. Most traditional fluorescent-dye-based lysosome probes rely on the protonation of the nitrogen atom in the morpholine unit to visualize the lysosomal microenvironment by inhibiting the photoinduced electron transfer (PET) effect. However, these probes often face selectivity issues within the complex cellular microenvironment. For instance, classic hemicyanine dyes (HD) show nonspecific fluorescence responses in the liver due to inappropriate p<i>K</i><sub>a</sub> value, leading to low imaging contrast and the risk of false positives. Herein, a series of novel pH/viscosity-activatable, lysosomal-targeted near-infrared (NIR) fluorescent probes were developed by incorporating naphthalimide dye with hemicyanine dyes. These probes exhibit no fluorescence at physiological pH and weak fluorescence under acidic conditions (key 1), with substantial fluorescence activation triggered by abnormal viscosity in pathological tissues (key 2). Notably, <b>NpCy-4</b> demonstrated a superior signal-to-background ratio (SBR) for cellular imaging and proved effective for real-time in situ diagnosis of acute gastritis.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"10 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143418267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synergistic Enhancement of PEC Activity in Heterojunction Assisted by Oxygen Vacancies and Ferroelectric Polarization at Zero Bias: Mechanism Study and Achievement of Ultrasensitive Detection
IF 7.4 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c06538
Lin Zhu, Yaorong He, Hui Huang, Wei Zhao, Tong Su, Xiao Wang, Shengya Zhang, Peiyao Du, Xiaoquan Lu
The utilization of ferroelectric polarization-assisted photoelectrochemical (PEC) systems holds huge promise for solving the issue of high recombination of photogenerated electron–hole pairs. Monitoring their intricate charge-transfer process can offer profound insights into the advancement of highly active photoelectrodes. In this work, the hydrothermally synthesized titanium dioxide nanorod arrays (TiO2 NRAs) are subjected to in situ etching to introduce oxygen vacancies (Ov), and subsequently loaded with barium titanate (BaTiO3, BTO) nanoparticles to form a ferroelectric polarization effect-assisted type-II heterojunction. The resulting Ov-TiO2/BTO demonstrates an ultrahigh photocurrent of 102 μA and outstanding stability over 7200 s, far surpassing majority of recently reported PEC photoanodes operating at a bias voltage of 0 V (vs Ag/AgCl). Notably, the photoinduced charge transfer in ferroelectric Ov-TiO2/BTO was monitored at the microscale by advanced scanning photoelectrochemical microscopy (SPECM). As a showcase, the aptamer-coupled self-powered PEC biosensor for kanamycin presents excellent sensitivity and good anti-interference ability. This study not only elucidates the intrinsic mechanism of the synergistic amplification of photoelectric signals by oxygen vacancies and ferroelectric heterojunctions but also provides a reliable platform for the ultrasensitive detection of biological molecules.
{"title":"Synergistic Enhancement of PEC Activity in Heterojunction Assisted by Oxygen Vacancies and Ferroelectric Polarization at Zero Bias: Mechanism Study and Achievement of Ultrasensitive Detection","authors":"Lin Zhu, Yaorong He, Hui Huang, Wei Zhao, Tong Su, Xiao Wang, Shengya Zhang, Peiyao Du, Xiaoquan Lu","doi":"10.1021/acs.analchem.4c06538","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06538","url":null,"abstract":"The utilization of ferroelectric polarization-assisted photoelectrochemical (PEC) systems holds huge promise for solving the issue of high recombination of photogenerated electron–hole pairs. Monitoring their intricate charge-transfer process can offer profound insights into the advancement of highly active photoelectrodes. In this work, the hydrothermally synthesized titanium dioxide nanorod arrays (TiO<sub>2</sub> NRAs) are subjected to <i>in situ</i> etching to introduce oxygen vacancies (Ov), and subsequently loaded with barium titanate (BaTiO<sub>3</sub>, BTO) nanoparticles to form a ferroelectric polarization effect-assisted type-II heterojunction. The resulting Ov-TiO<sub>2</sub>/BTO demonstrates an ultrahigh photocurrent of 102 μA and outstanding stability over 7200 s, far surpassing majority of recently reported PEC photoanodes operating at a bias voltage of 0 V (vs Ag/AgCl). Notably, the photoinduced charge transfer in ferroelectric Ov-TiO<sub>2</sub>/BTO was monitored at the microscale by advanced scanning photoelectrochemical microscopy (SPECM). As a showcase, the aptamer-coupled self-powered PEC biosensor for kanamycin presents excellent sensitivity and good anti-interference ability. This study not only elucidates the intrinsic mechanism of the synergistic amplification of photoelectric signals by oxygen vacancies and ferroelectric heterojunctions but also provides a reliable platform for the ultrasensitive detection of biological molecules.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"105 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143418269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of the Human Scent on Fired Cartridge Cases from a Simulated Crime Scene.
IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c06231
Ulrika Malá, Václav Vokálek, Pavel Vrbka, Jana Čechová, Petra Pojmanová, Oleksii Kaminskyi, Veronika Škeříková, Štěpán Urban

Fired cartridge cases are often found at crime scenes connected with a shooting, and their prompt analysis can be very useful for the police investigation. In addition to dactyloscopy (fingerprints) that tends to be more or less damaged on the cartridges and often are not adequate for individual identification, there are also scent traces on the fired cartridges that are not fully destroyed by the gun's being fired. In this pilot study, we compare the human scent remaining on cartridge cases after firing with scent samples from different volunteers to find out who loaded the gun before the gun was shot. In this experiment, a simulated crime scene was prepared, and one of our volunteers loaded the weapon. Analysis of the scent remaining on cartridge cases was carried out using two different methods, namely, olfactronics and olfactorics.

{"title":"Analysis of the Human Scent on Fired Cartridge Cases from a Simulated Crime Scene.","authors":"Ulrika Malá, Václav Vokálek, Pavel Vrbka, Jana Čechová, Petra Pojmanová, Oleksii Kaminskyi, Veronika Škeříková, Štěpán Urban","doi":"10.1021/acs.analchem.4c06231","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06231","url":null,"abstract":"<p><p>Fired cartridge cases are often found at crime scenes connected with a shooting, and their prompt analysis can be very useful for the police investigation. In addition to dactyloscopy (fingerprints) that tends to be more or less damaged on the cartridges and often are not adequate for individual identification, there are also scent traces on the fired cartridges that are not fully destroyed by the gun's being fired. In this pilot study, we compare the human scent remaining on cartridge cases after firing with scent samples from different volunteers to find out who loaded the gun before the gun was shot. In this experiment, a simulated crime scene was prepared, and one of our volunteers loaded the weapon. Analysis of the scent remaining on cartridge cases was carried out using two different methods, namely, olfactronics and olfactorics.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412335","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Application of Surface-Enhanced Raman Spectroscopy in Head and Neck Cancer Diagnosis.
IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c02796
Bowen Yang, Xiaobo Dai, Shuai Chen, Chunjie Li, Bing Yan

Surface-enhanced Raman spectroscopy (SERS) has emerged as a crucial analytical tool in the field of oncology, particularly presenting significant challenges for the diagnosis and treatment of head and neck cancer. This Review provides an overview of the current status and prospects of SERS applications, highlighting their profound impact on molecular biology-level diagnosis, tissue-level identification, HNC therapeutic monitoring, and integration with emerging technologies. The application of SERS for single-molecule assays such as epidermal growth factor receptors and PD-1/PD-L1, gene expression analysis, and tumor microenvironment characterization is also explored. This Review showcases the innovative applications of SERS in liquid biopsies such as high-throughput lateral flow analysis for ctDNA quantification and salivary diagnostics, which can offer rapid and highly sensitive assays suitable for immediate detection. At the tissue level, SERS enables cancer cell visualization and intraoperative tumor margin identification, enhancing surgical precision and decision-making. The role of SERS in radiotherapy, chemotherapy, and targeted therapy is examined along with its use in real-time pharmacokinetic studies to monitor treatment response. Furthermore, this Review delves into the synergistic relationship between SERS and artificial intelligence, encompassing machine learning and deep learning algorithms, marking the dawn of a new era in precision oncology. The integration of SERS with genomics, metabolomics, transcriptomics, proteomics, and single-cell omics at the multiomics level will revolutionize our comprehension and management of HNC. This Review offers an overview of the transformative impacts of SERS and examines future directions as well as challenges in this dynamic research field.

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引用次数: 0
Counterexample to Luminescent Metal Nanocluster Paradigm: Reactive Au(I) Complexes from His-Au(III) Synthetic Reactions and Their Chemistry for Direct Analysis of d-Penicillamine.
IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c06202
Yuan Tong, Yanping Sun, Yelan Xiao, Yue Zou, Jingyang Guan, Xueji Zhang, Tong Shu

There is a widely accepted material characterization paradigm in the success of synthesis of luminescent metal nanoclusters (NCs) in the aqueous phase: new emission, metal reduction, and ultrasmall particles (size < 3 nm). Herein, we falsified well-known fluorescent histidine (His)-directed Au NCs and a new model of metastable His-Au(I) complexes with emissive His oxidation products has been established. The redox reaction of His and Au(III) yields His oligomers with blue-green fluorescence and reducible Au(I) self-assemblies, which can form ultrasmall particles at electron bombardment. The resultant Au(I) complexes can be further reduced by d-penicillamine (DPA) via forming anisotropic Au nanoparticles with distinct local surface plasmon resonance absorption. The emerging absorption can quench the fluorescence of the His oxidation products through the inner filter effect pathway. A facile dual-model analytical approach is thus proposed to directly detect DPA fluorometrically and colorimetrically without interference from common biothiols, including cysteine and glutathione. Thus, with the help of a smartphone app, a highly sensitive and selective point-of-care testing for DPA direct detection can be realized. Our study warrants the importance of thinking twice about characterization results and supports corrective models for finding new reactions and possible applications.

{"title":"Counterexample to Luminescent Metal Nanocluster Paradigm: Reactive Au(I) Complexes from His-Au(III) Synthetic Reactions and Their Chemistry for Direct Analysis of d-Penicillamine.","authors":"Yuan Tong, Yanping Sun, Yelan Xiao, Yue Zou, Jingyang Guan, Xueji Zhang, Tong Shu","doi":"10.1021/acs.analchem.4c06202","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06202","url":null,"abstract":"<p><p>There is a widely accepted material characterization paradigm in the success of synthesis of luminescent metal nanoclusters (NCs) in the aqueous phase: new emission, metal reduction, and ultrasmall particles (size < 3 nm). Herein, we falsified well-known fluorescent histidine (His)-directed Au NCs and a new model of metastable His-Au(I) complexes with emissive His oxidation products has been established. The redox reaction of His and Au(III) yields His oligomers with blue-green fluorescence and reducible Au(I) self-assemblies, which can form ultrasmall particles at electron bombardment. The resultant Au(I) complexes can be further reduced by d-penicillamine (DPA) via forming anisotropic Au nanoparticles with distinct local surface plasmon resonance absorption. The emerging absorption can quench the fluorescence of the His oxidation products through the inner filter effect pathway. A facile dual-model analytical approach is thus proposed to directly detect DPA fluorometrically and colorimetrically without interference from common biothiols, including cysteine and glutathione. Thus, with the help of a smartphone app, a highly sensitive and selective point-of-care testing for DPA direct detection can be realized. Our study warrants the importance of thinking twice about characterization results and supports corrective models for finding new reactions and possible applications.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143416772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computer-Aided Design of 3D Non-Enzymatic Catalytic Cascade Systems for In Situ Multiplexed mRNA Imaging in Single-Cells.
IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c06589
Yun Wen, Li-Ping Wang, Jian-Hua Wang, Yong-Liang Yu, Shuai Chen

mRNA, a critical biomarker for various diseases and a promising target for cancer therapy, is central to biological and medical research. However, the development of multiplexed approaches for in situ monitoring of mRNA in live cells are limited by their reliance on enzyme-based signal amplification, challenges with in situ signal diffusion, and the complexity of nucleic acid design. In this study, we introduce a nonenzymatic catalytic DNA assembly (NEDA) technique to address these limitations. NEDA facilitates the precise in situ imaging of intracellular mRNA by assembling three free hairpin DNA amplifiers into a low-mobility, three-dimensional DNA spherical structure. This approach also enables the simultaneous detection of four distinct targets via the combination of fluorescent signals, with a detection limit as low as 141.2 pM for target mRNA. To enhance the efficiency of nucleic acid design, we employed computer-aided design (CAD) to rapidly generate feasible sequences for highly multiplexed detection. By integrating various machine learning algorithms, we achieved impressive accuracy of nearly 96.66% in distinguishing multiple cell types and 87.80% in identifying the same cell type under different drug stimulation conditions. Notably, our platform can also identify drug stimuli with similar mechanisms of action, highlighting its potential in drug development. This multiplexed 3D assembly sensing strategy with CAD not only enhances the ability to image nucleic acid sequences in situ simultaneously but also provides a novel platform for efficient molecular diagnostics and personalized therapy.

{"title":"Computer-Aided Design of 3D Non-Enzymatic Catalytic Cascade Systems for In Situ Multiplexed mRNA Imaging in Single-Cells.","authors":"Yun Wen, Li-Ping Wang, Jian-Hua Wang, Yong-Liang Yu, Shuai Chen","doi":"10.1021/acs.analchem.4c06589","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06589","url":null,"abstract":"<p><p>mRNA, a critical biomarker for various diseases and a promising target for cancer therapy, is central to biological and medical research. However, the development of multiplexed approaches for in situ monitoring of mRNA in live cells are limited by their reliance on enzyme-based signal amplification, challenges with in situ signal diffusion, and the complexity of nucleic acid design. In this study, we introduce a nonenzymatic catalytic DNA assembly (NEDA) technique to address these limitations. NEDA facilitates the precise in situ imaging of intracellular mRNA by assembling three free hairpin DNA amplifiers into a low-mobility, three-dimensional DNA spherical structure. This approach also enables the simultaneous detection of four distinct targets via the combination of fluorescent signals, with a detection limit as low as 141.2 pM for target mRNA. To enhance the efficiency of nucleic acid design, we employed computer-aided design (CAD) to rapidly generate feasible sequences for highly multiplexed detection. By integrating various machine learning algorithms, we achieved impressive accuracy of nearly 96.66% in distinguishing multiple cell types and 87.80% in identifying the same cell type under different drug stimulation conditions. Notably, our platform can also identify drug stimuli with similar mechanisms of action, highlighting its potential in drug development. This multiplexed 3D assembly sensing strategy with CAD not only enhances the ability to image nucleic acid sequences in situ simultaneously but also provides a novel platform for efficient molecular diagnostics and personalized therapy.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412338","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dual-Mode Colorimetric/SERS Lateral Flow Immunoassay with Machine Learning-Driven Optimization for Ultrasensitive Mycotoxin Detection.
IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c06582
Boyang Sun, Haiyu Wu, Tianrui Fang, Zihan Wang, Ke Xu, Huiqi Yan, Jinbo Cao, Ying Wang, Li Wang

Detecting and quantifying mycotoxins using LFIA are challenging due to the need for high sensitivity and accuracy. To address this, a dual-mode colorimetric-SERS LFIA was developed for detecting deoxynivalenol (DON). Rhodium nanocores provided strong plasmonic properties as the SERS substrate, while silver nanoparticles created electromagnetic "hotspots" to enhance signal sensitivity. Finite element modeling optimized the electromagnetic field intensity, and Prussian blue generated a distinct signal at 2156 cm-1, effectively reducing background interference. This dual-mode LFIA achieved a detection limit of 4.21 pg/mL, 37 times lower than that of colloidal gold-based LFIA (0.156 ng/mL). Machine learning algorithms, including ANN and KNN, enabled precise classification and quantification of contamination, achieving 98.8% classification accuracy and an MSE of 0.57. These results underscore the platform's potential for analyzing harmful substances in complex matrices and demonstrate the important role of machine learning-enhanced nanosensors in advancing detection technologies.

{"title":"Dual-Mode Colorimetric/SERS Lateral Flow Immunoassay with Machine Learning-Driven Optimization for Ultrasensitive Mycotoxin Detection.","authors":"Boyang Sun, Haiyu Wu, Tianrui Fang, Zihan Wang, Ke Xu, Huiqi Yan, Jinbo Cao, Ying Wang, Li Wang","doi":"10.1021/acs.analchem.4c06582","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06582","url":null,"abstract":"<p><p>Detecting and quantifying mycotoxins using LFIA are challenging due to the need for high sensitivity and accuracy. To address this, a dual-mode colorimetric-SERS LFIA was developed for detecting deoxynivalenol (DON). Rhodium nanocores provided strong plasmonic properties as the SERS substrate, while silver nanoparticles created electromagnetic \"hotspots\" to enhance signal sensitivity. Finite element modeling optimized the electromagnetic field intensity, and Prussian blue generated a distinct signal at 2156 cm<sup>-1</sup>, effectively reducing background interference. This dual-mode LFIA achieved a detection limit of 4.21 pg/mL, 37 times lower than that of colloidal gold-based LFIA (0.156 ng/mL). Machine learning algorithms, including ANN and KNN, enabled precise classification and quantification of contamination, achieving 98.8% classification accuracy and an MSE of 0.57. These results underscore the platform's potential for analyzing harmful substances in complex matrices and demonstrate the important role of machine learning-enhanced nanosensors in advancing detection technologies.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143416773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
pyBinder: Quantitation to Advance Affinity Selection-Mass Spectrometry.
IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c04445
Joseph S Brown, Michael A Lee, Wayne Vuong, Andrei Loas, Bradley L Pentelute

Affinity selection-mass spectrometry (AS-MS) is a ligand discovery platform that relies upon mass spectrometry to identify molecules bound to a biomolecular target. When utilized with large peptide libraries (108 members), AS-MS sample complexity can surpass the sequencing capacity of modern mass spectrometers, resulting in incomplete data, identification of few target-specific ligands, and/or incomplete sequencing. To address this challenge, we introduce pyBinder to perform quantitation on AS-MS data to process primary MS1 data and develop two scores to rank the peptides from the integration of their peak area: target selectivity and concentration-dependent enrichment. We benchmark pyBinder utilizing AS-MS data developed against antihemagglutinin antibody 12ca5, revealing that peptides that contain a motif known for target-specific high-affinity binding are well characterized by these two scores. AS-MS data from a second protein target, WD Repeat Domain 5 (WDR5), is analyzed to confirm the two pyBinder scores reliably capture the target-specific motif-containing peptides. From the results delivered by pyBinder, a list of target-selective features is developed and fed back into subsequent MS experiments to facilitate expanded data generation and the targeted discovery of selective ligands. pyBinder analysis resulted in a 4-fold increase in motif-containing sequence identification for WDR5 (from 3 to 14 ligands discovered), showing the utility of the two scores. This work establishes an improved approach for AS-MS to enable discovery outcomes (i.e., more ligands identified), but also a way to compare AS-MS data across samples, protocols, and conditions broadly.

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引用次数: 0
A Scenario-Adaptive Microfluidic Chip for Constructing In Vitro Models of Biological Barriers.
IF 6.7 1区 化学 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2025-02-14 DOI: 10.1021/acs.analchem.4c06602
Yaran Chang, Tian Chen, Shanshan Geng, Yilin Wang, Wenmei Zhang, Qin Hu, Yaoyao Zhao, Qiaosheng Pu, Zhihong Liu, Guangsheng Guo, Xiayan Wang

Microfluidic-based in vitro physiological barrier models are capable of simulating crucial environmental factors during barrier formation, including fluid shear and geometric-level cellular cocultures, thus offering enhanced physiological fidelity relative to conventional platforms. However, the sealed structure of microfluidic barrier chips faces challenges in characterizing and monitoring the barrier performance, especially in measuring transendothelial/epithelial electrical resistance (TEER). Here, we developed a microfluidic barrier chip that can be easily adapted to commercial TEER detectors. During the barrier construction phase, continuous perfusion culture was utilized to maintain a constant fluid shear stress; for barrier characterization, commercial resistance meters were employed to measure TEER directly. Using this chip, we successfully constructed an in vitro blood-brain barrier model with a TEER of approximately 220 Ω·cm2, indicating high physiological relevance. This scenario-adaptive microfluidic chip demonstrates extensive potential for developing organ-on-a-chip models across various barrier systems, with significant implications for barrier characteristic monitoring and in situ cell sampling within the chip.

{"title":"A Scenario-Adaptive Microfluidic Chip for Constructing In Vitro Models of Biological Barriers.","authors":"Yaran Chang, Tian Chen, Shanshan Geng, Yilin Wang, Wenmei Zhang, Qin Hu, Yaoyao Zhao, Qiaosheng Pu, Zhihong Liu, Guangsheng Guo, Xiayan Wang","doi":"10.1021/acs.analchem.4c06602","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06602","url":null,"abstract":"<p><p>Microfluidic-based in vitro physiological barrier models are capable of simulating crucial environmental factors during barrier formation, including fluid shear and geometric-level cellular cocultures, thus offering enhanced physiological fidelity relative to conventional platforms. However, the sealed structure of microfluidic barrier chips faces challenges in characterizing and monitoring the barrier performance, especially in measuring transendothelial/epithelial electrical resistance (TEER). Here, we developed a microfluidic barrier chip that can be easily adapted to commercial TEER detectors. During the barrier construction phase, continuous perfusion culture was utilized to maintain a constant fluid shear stress; for barrier characterization, commercial resistance meters were employed to measure TEER directly. Using this chip, we successfully constructed an in vitro blood-brain barrier model with a TEER of approximately 220 Ω·cm<sup>2</sup>, indicating high physiological relevance. This scenario-adaptive microfluidic chip demonstrates extensive potential for developing organ-on-a-chip models across various barrier systems, with significant implications for barrier characteristic monitoring and in situ cell sampling within the chip.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143416714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Analytical Chemistry
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