Extracellular vesicles (EVs) offer promising noninvasive alternatives for convenient and noninvasive prostate cancer (PCa) diagnosis, but inefficient EV enrichment and cargo extraction hinder discovery and validation for their clinical applications. Here, we present an integrated pipeline based on functionalized magnetic beads to streamline and enhance the efficiency of urinary EV miRNA analysis. EVs are first enriched on amphiphilic magnetic beads through chemical affinity, followed by EV lysis and the isolation of miRNAs through solid phase extraction. The new pipeline demonstrated a more than 10-fold increase in urine EV miRNA extraction efficiency compared to the traditional ultracentrifugation combined TRIzol method while reducing the sample processing time to within 1 h. The one-bead strategy further allowed us to automate the procedure on a 96-channel instrument. We applied the pipeline to analyze urine samples from 108 benign prostatic hyperplasia (BPH) controls and 92 PCa cases. Among 195 miRNA biomarkers from the literature, we prioritized 18 miRNAs for quantification and successfully validated 12 miRNAs with a ratio-based normalized method. The quantification data from BPH controls and PCa cases in the training set were subjected to a machine learning analysis of Random Forest, through which we generated a five-miRNA panel consisting of miR-148a-5p, miR-21-5p, miR-181a-5p, miR-222-3p, and miR-100-5p. This panel showed high sensitivity (89%) and specificity (72%) in the test set, highlighting immense potential of this streamlined pipeline for noninvasive diagnosis.
{"title":"One-Pot Sequential Enrichment of Urinary Extracellular Vesicle and miRNAs Identifies a Noninvasive Biomarker Panel for Prostate Cancer Diagnosis.","authors":"Yufeng Liu, Guiyuan Zhang, Dong Wei, Hao Zhang, Anton Iliuk, Zhuoying Xie, Yanhong Gu, Zhongze Gu, Ying Zhang, Yefei Zhu","doi":"10.1021/acs.analchem.4c04807","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04807","url":null,"abstract":"<p><p>Extracellular vesicles (EVs) offer promising noninvasive alternatives for convenient and noninvasive prostate cancer (PCa) diagnosis, but inefficient EV enrichment and cargo extraction hinder discovery and validation for their clinical applications. Here, we present an integrated pipeline based on functionalized magnetic beads to streamline and enhance the efficiency of urinary EV miRNA analysis. EVs are first enriched on amphiphilic magnetic beads through chemical affinity, followed by EV lysis and the isolation of miRNAs through solid phase extraction. The new pipeline demonstrated a more than 10-fold increase in urine EV miRNA extraction efficiency compared to the traditional ultracentrifugation combined TRIzol method while reducing the sample processing time to within 1 h. The one-bead strategy further allowed us to automate the procedure on a 96-channel instrument. We applied the pipeline to analyze urine samples from 108 benign prostatic hyperplasia (BPH) controls and 92 PCa cases. Among 195 miRNA biomarkers from the literature, we prioritized 18 miRNAs for quantification and successfully validated 12 miRNAs with a ratio-based normalized method. The quantification data from BPH controls and PCa cases in the training set were subjected to a machine learning analysis of Random Forest, through which we generated a five-miRNA panel consisting of miR-148a-5p, miR-21-5p, miR-181a-5p, miR-222-3p, and miR-100-5p. This panel showed high sensitivity (89%) and specificity (72%) in the test set, highlighting immense potential of this streamlined pipeline for noninvasive diagnosis.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142754361","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-29DOI: 10.1021/acs.analchem.4c03496
Hadi Parastar, Philipp Weller
This invited feature article discusses the potential of gas chromatography-ion mobility spectrometry (GC-IMS) as a point-of-need alternative for volatilomics. Furthermore, the capabilities and versatility of machine learning (ML) (chemometric) techniques used in the framework of GC-IMS analysis are also discussed. Modern ML techniques allow for addressing advanced GC-IMS challenges to meet the demands of modern chromatographic research. We will demonstrate workflows based on available tools that can be used with a clear focus on open-source packages to ensure that every researcher can follow our feature article. In addition, we will provide insights and perspectives on the typical issues of the GC-IMS along with a discussion of the process necessary to obtain more reliable qualitative and quantitative analytical results.
{"title":"How Machine Learning and Gas Chromatography-Ion Mobility Spectrometry Form an Optimal Team for Benchtop Volatilomics","authors":"Hadi Parastar, Philipp Weller","doi":"10.1021/acs.analchem.4c03496","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c03496","url":null,"abstract":"This invited feature article discusses the potential of gas chromatography-ion mobility spectrometry (GC-IMS) as a point-of-need alternative for volatilomics. Furthermore, the capabilities and versatility of machine learning (ML) (chemometric) techniques used in the framework of GC-IMS analysis are also discussed. Modern ML techniques allow for addressing advanced GC-IMS challenges to meet the demands of modern chromatographic research. We will demonstrate workflows based on available tools that can be used with a clear focus on open-source packages to ensure that every researcher can follow our feature article. In addition, we will provide insights and perspectives on the typical issues of the GC-IMS along with a discussion of the process necessary to obtain more reliable qualitative and quantitative analytical results.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"26 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142742653","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-29DOI: 10.1021/acs.analchem.4c04027
Pan Zhou, Xiao-Chun Zhu, Xiao-Feng Wang, Ruo Yuan, Ya-Qin Chai
Herein, the bovine serum albumin (BSA)-loaded tetrakis[4-(4′-cyanophenyl)phenyl]ethane nanoaggregates (NAs) (BSA@TBPE-(CN)4 NAs) as a novel electrochemiluminescence (ECL) emitter were first prepared, which exhibited superior ECL performance via the newly defined protein-induced ECL enhancement. Impressively, BSA not only restricted the intramolecular motions by its hydrophobic cavity to improve optical radiation for enhancing ECL efficiency but also promoted the electrochemical excitation of BSA@TBPE-(CN)4 NAs in which amino acid residues of BSA altered the surface states and narrowed the energy gap of BSA@TBPE-(CN)4 NAs for further boosting the ECL efficiency. Furthermore, the BSA@TBPE-(CN)4 NAs displayed a more dispersed state due to electrostatic repulsion caused by its considerable negative charges, which was conducive to reacting more fully with coreactants for improving ECL emission. Excitingly, the BSA@TBPE-(CN)4 NAs exhibited a threefold stronger ECL intensity and a 4.8-fold higher ECL efficiency compared to those of TBPE-(CN)4 NAs. Thus, as an application, an ECL biosensor was fabricated based on the BSA@TBPE-(CN)4 NAs as an efficient emitter and the mismatch-fueled three-dimensional (3D) DNA walker as an effective signal amplifier for the rapid and ultrasensitive detection of microRNA-21 with a detection limit (LOD) of 19.1 aM, and it was successfully applied to assess the microRNA-21 expression of human cancer cells MCF-7 and HeLa. This work developed a novel avenue to reasonably synthesize highly efficient organic ECL emitters for motivating their potential application in ultrasensitive biosensing and high-resolution ECL bioimaging.
{"title":"Protein-Induced Electrochemiluminescence Enhancement of Tetraphenylvinyl Derivatives for Ultrasensitive Bioanalysis","authors":"Pan Zhou, Xiao-Chun Zhu, Xiao-Feng Wang, Ruo Yuan, Ya-Qin Chai","doi":"10.1021/acs.analchem.4c04027","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04027","url":null,"abstract":"Herein, the bovine serum albumin (BSA)-loaded tetrakis[4-(4′-cyanophenyl)phenyl]ethane nanoaggregates (NAs) (BSA@TBPE-(CN)<sub>4</sub> NAs) as a novel electrochemiluminescence (ECL) emitter were first prepared, which exhibited superior ECL performance via the newly defined protein-induced ECL enhancement. Impressively, BSA not only restricted the intramolecular motions by its hydrophobic cavity to improve optical radiation for enhancing ECL efficiency but also promoted the electrochemical excitation of BSA@TBPE-(CN)<sub>4</sub> NAs in which amino acid residues of BSA altered the surface states and narrowed the energy gap of BSA@TBPE-(CN)<sub>4</sub> NAs for further boosting the ECL efficiency. Furthermore, the BSA@TBPE-(CN)<sub>4</sub> NAs displayed a more dispersed state due to electrostatic repulsion caused by its considerable negative charges, which was conducive to reacting more fully with coreactants for improving ECL emission. Excitingly, the BSA@TBPE-(CN)<sub>4</sub> NAs exhibited a threefold stronger ECL intensity and a 4.8-fold higher ECL efficiency compared to those of TBPE-(CN)<sub>4</sub> NAs. Thus, as an application, an ECL biosensor was fabricated based on the BSA@TBPE-(CN)<sub>4</sub> NAs as an efficient emitter and the mismatch-fueled three-dimensional (3D) DNA walker as an effective signal amplifier for the rapid and ultrasensitive detection of microRNA-21 with a detection limit (LOD) of 19.1 aM, and it was successfully applied to assess the microRNA-21 expression of human cancer cells MCF-7 and HeLa. This work developed a novel avenue to reasonably synthesize highly efficient organic ECL emitters for motivating their potential application in ultrasensitive biosensing and high-resolution ECL bioimaging.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"6 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142742654","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-28DOI: 10.1021/acs.analchem.4c04780
Christopher P Harrilal, Sandilya V B Garimella, Randolph V Norheim, Yehia M Ibrahim
The ability to uniquely identify a compound requires highly precise and orthogonal measurements. Here we describe a newly developed analytical platform that integrates high resolution ion mobility and cryogenic vibrational ion spectroscopy for high-precision structural characterizations. This platform allows for the temporal separation of isomeric/isobaric ions and provides a highly sensitive description of the ion's adopted geometry in the gas phase. The combination of these orthogonal structural measurements yields precise descriptors that can be used to resolve between and confidently identify highly similar ions. The unique benefits of our instrument, which integrates a structures for lossless ion manipulations ion mobility (SLIM IM) device with messenger tagging infrared spectroscopy, include the ability to perform high-resolution ion mobility separations and to record the IR spectra of all ions simultaneously. The SLIM IM device, with its 13 m separation path length, allows for multipass experiments to be performed for increased resolution as needed. It is integrated with an Agilent qTOF MS where the collision cell was replaced with a cryogenically held (30 K) TW-SLIM module. The cryo-SLIM is operated in a novel manner that allows ions to be streamed through the device and collisionally cooled to a temperature where they can form noncovalently bound N2 complexes that are maintained as they exit the device and are detected by the TOF mass analyzer. The instrument can be operated in two modes: IMS+IR where the IR spectra for mobility-selected ions can be recorded and IR-only mode where the IR spectra for all mass-resolved ions can be recorded. In IR-only mode, IR spectra (400 cm-1 spectral range) can be recorded in as short as 2 s for high throughput measurements. This work details the construction of the instrument and modes of operation. It provides initial benchmarking of CCS and IR measurements to demonstrate the utility of this instrument for targeted and untargeted approaches.
{"title":"Development of a Platform for High-Resolution Ion Mobility Separations Coupled with Messenger Tagging Infrared Spectroscopy for High-Precision Structural Characterizations.","authors":"Christopher P Harrilal, Sandilya V B Garimella, Randolph V Norheim, Yehia M Ibrahim","doi":"10.1021/acs.analchem.4c04780","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04780","url":null,"abstract":"<p><p>The ability to uniquely identify a compound requires highly precise and orthogonal measurements. Here we describe a newly developed analytical platform that integrates high resolution ion mobility and cryogenic vibrational ion spectroscopy for high-precision structural characterizations. This platform allows for the temporal separation of isomeric/isobaric ions and provides a highly sensitive description of the ion's adopted geometry in the gas phase. The combination of these orthogonal structural measurements yields precise descriptors that can be used to resolve between and confidently identify highly similar ions. The unique benefits of our instrument, which integrates a structures for lossless ion manipulations ion mobility (SLIM IM) device with messenger tagging infrared spectroscopy, include the ability to perform high-resolution ion mobility separations and to record the IR spectra of all ions simultaneously. The SLIM IM device, with its 13 m separation path length, allows for multipass experiments to be performed for increased resolution as needed. It is integrated with an Agilent qTOF MS where the collision cell was replaced with a cryogenically held (30 K) TW-SLIM module. The cryo-SLIM is operated in a novel manner that allows ions to be streamed through the device and collisionally cooled to a temperature where they can form noncovalently bound N<sub>2</sub> complexes that are maintained as they exit the device and are detected by the TOF mass analyzer. The instrument can be operated in two modes: IMS+IR where the IR spectra for mobility-selected ions can be recorded and IR-only mode where the IR spectra for all mass-resolved ions can be recorded. In IR-only mode, IR spectra (400 cm<sup>-1</sup> spectral range) can be recorded in as short as 2 s for high throughput measurements. This work details the construction of the instrument and modes of operation. It provides initial benchmarking of CCS and IR measurements to demonstrate the utility of this instrument for targeted and untargeted approaches.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142737756","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A major challenge for imaging-guided precise chemotherapy remains the ability to track the in situ real-time variation of the reactive oxygen species (ROS) level during treatment with prooxidation antitumor drugs. Chemiluminescence (CL) is widely used as an in vivo imaging tool with an excellent signal-to-noise ratio and high biological safety. However, suffering from flash-type and poor water solubility, most of the reported CL probes for ROS detection are unsuitable for in vivo long-term tracking. Herein, we designed a water-soluble CL nanohydrogel (L-012/Co2+@NGs) by cross-linking of vinyl-derived β-cyclodextrin monomer (MAH-β-CD) and loaded with luminol analog L-012 and cobalt ions (Co2+). In vitro studies reveal that L-012/Co2+@NGs exhibit long-lasting CL emission (up to 4 h) due to the slow diffusion of hydrogen peroxide in the nanohydrogel. High catalytic efficiency from the accelerated reduction of Co3+ to Co2+ through Tris and chelation of Co2+, as well as protection of the β-CD cavity against the active intermediate of L-012, enables L-012/Co2+@NGs to exhibit a 722-fold CL signal turn-on ratio and a nanomolar limit of detection (8.9 nmol/L). Piperlongumine (PL) was selected as a model of prooxidation drugs. The long-term and highly efficient CL strategy was designed for monitoring the local dynamic changes of ROS in PL-treated tumor-bearing mice for 150 min. The CL signal increased over time until reaching its maximum with a ∼6-fold increase at 15 min and then decreased slowly. The CL-functionalized nanohydrogel platform with good biocompatibility offers a great opportunity for imaging-guided precise tumor chemotherapy of PL and other prooxidation antitumor drugs.
{"title":"Highly Efficient and Long-Lasting Chemiluminescence-Functionalized Nanohydrogel for Imaging-Guided Precise Piperlongumine Chemotherapy.","authors":"Miaomiao Zhang, Kang Wang, Meiqin Li, Xun Fang, Zhongxiang Chen, Yuting Li, Haifeng Lu, Qunlin Zhang","doi":"10.1021/acs.analchem.4c05654","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05654","url":null,"abstract":"<p><p>A major challenge for imaging-guided precise chemotherapy remains the ability to track the in situ real-time variation of the reactive oxygen species (ROS) level during treatment with prooxidation antitumor drugs. Chemiluminescence (CL) is widely used as an <i>in vivo</i> imaging tool with an excellent signal-to-noise ratio and high biological safety. However, suffering from flash-type and poor water solubility, most of the reported CL probes for ROS detection are unsuitable for in vivo long-term tracking. Herein, we designed a water-soluble CL nanohydrogel (L-012/Co<sup>2+</sup>@NGs) by cross-linking of vinyl-derived β-cyclodextrin monomer (MAH-β-CD) and loaded with luminol analog L-012 and cobalt ions (Co<sup>2+</sup>). <i>In vitro</i> studies reveal that L-012/Co<sup>2+</sup>@NGs exhibit long-lasting CL emission (up to 4 h) due to the slow diffusion of hydrogen peroxide in the nanohydrogel. High catalytic efficiency from the accelerated reduction of Co<sup>3+</sup> to Co<sup>2+</sup> through Tris and chelation of Co<sup>2+</sup>, as well as protection of the β-CD cavity against the active intermediate of L-012, enables L-012/Co<sup>2+</sup>@NGs to exhibit a 722-fold CL signal turn-on ratio and a nanomolar limit of detection (8.9 nmol/L). Piperlongumine (PL) was selected as a model of prooxidation drugs. The long-term and highly efficient CL strategy was designed for monitoring the local dynamic changes of ROS in PL-treated tumor-bearing mice for 150 min. The CL signal increased over time until reaching its maximum with a ∼6-fold increase at 15 min and then decreased slowly. The CL-functionalized nanohydrogel platform with good biocompatibility offers a great opportunity for imaging-guided precise tumor chemotherapy of PL and other prooxidation antitumor drugs.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142749480","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-28DOI: 10.1021/acs.analchem.4c05466
Wei Yin Lim, Ee Von Lau, Narayanan Ramakrishnan
We report a Technical Note on detecting nanoplastics in water samples through electrophoresis and quartz crystal microbalance (QCM) instrumentation. We conducted electrophoresis experiments by immersing a QCM in a sample of ultrapure water containing polyethylene (PE) nanoplastics. It was interesting to observe that nanoplastics were attracted toward the QCM and adhered to one side of the QCM electrode. The attached particles introduced mass loading to the QCM and were characterized by a decrease in resonance frequency of the crystal. Furthermore, when a small region around the center of electrode was alone exposed for direct contact in water and the rest of the electrode was masked using photoresist, the nanoplastics were concentrated only in the exposed electrode region, significantly enhancing detection sensitivity. To further investigate the applicability for real-life water samples, we experimented with the technique with readily available bottled drinking water and mineral water, where we spiked these water samples with nanoplastics. It was observed that the resonance frequency shifts were significantly larger for samples with nanoplastics compared to samples without nanoplastics. In addition, Raman spectroscopy and microscopy imaging were used to further confirm the presence and locations of nanoplastics on the electrode surface. This study highlights the combination of electrophoresis and QCM effectiveness in detecting nanoplastics across different water types and their potential for broader applications in environmental monitoring.
{"title":"Electrophoresis and Quartz Crystal Microbalance Instrumentation to Sense Nanoplastics in Water.","authors":"Wei Yin Lim, Ee Von Lau, Narayanan Ramakrishnan","doi":"10.1021/acs.analchem.4c05466","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05466","url":null,"abstract":"<p><p>We report a Technical Note on detecting nanoplastics in water samples through electrophoresis and quartz crystal microbalance (QCM) instrumentation. We conducted electrophoresis experiments by immersing a QCM in a sample of ultrapure water containing polyethylene (PE) nanoplastics. It was interesting to observe that nanoplastics were attracted toward the QCM and adhered to one side of the QCM electrode. The attached particles introduced mass loading to the QCM and were characterized by a decrease in resonance frequency of the crystal. Furthermore, when a small region around the center of electrode was alone exposed for direct contact in water and the rest of the electrode was masked using photoresist, the nanoplastics were concentrated only in the exposed electrode region, significantly enhancing detection sensitivity. To further investigate the applicability for real-life water samples, we experimented with the technique with readily available bottled drinking water and mineral water, where we spiked these water samples with nanoplastics. It was observed that the resonance frequency shifts were significantly larger for samples with nanoplastics compared to samples without nanoplastics. In addition, Raman spectroscopy and microscopy imaging were used to further confirm the presence and locations of nanoplastics on the electrode surface. This study highlights the combination of electrophoresis and QCM effectiveness in detecting nanoplastics across different water types and their potential for broader applications in environmental monitoring.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142737761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
High-sensitivity fluorescent probes provide a powerful tool for understanding life processes and functioning mechanisms. Therefore, the development of a universal strategy to optimize probes holds substantial importance. Herein, we developed a novel strategy for common probe upgrades: rather than simply pursuing a higher fluorescence intensity of the probe itself, we tried to promote the detection sensitivity by enhancing the probe-substrate interactions. Fortified with polyionic polymers, self-assembled probes could be endowed with enhanced attractions to the substrate. In this work, we took the AChE-AuNCs detection system as a typical and important example to verify this concept of the "enrichment-enhanced detection" strategy (EED strategy). Two probes, AuNCs@GC and AuNCs@CMCS, with similar composing polymers (chitosan derivatives), microstructures, fluorescence profiles, and distinct charges were delicately designed and thoroughly studied. CMCS with an abundance of negatively charged carboxy groups plays an important role in the enrichment of thiocholine through electrostatic interactions. Thus, despite having similar composing components, structures, and almost identical fluorescence profiles, the negatively charged composite shows superior sensitivity (15.2-fold enhancement) and response time (2-fold faster) compared to the AuNCs@GC, thereby validating the feasibility of the EED strategy. Overall, our work validates the EED strategy and applies it to the accurate detection of AChE activity. We believe that this strategy offers substantial insights for the generalization and enhancement of advanced nanoprobes.
{"title":"Advancing the Validation of the Enrichment-Enhanced Detection Strategy with Au Nanoclusters for AChE Detection.","authors":"Xilin Bai, Wei Deng, Jian Cai, Haiying Xia, Jing Bai, Ming Zhou","doi":"10.1021/acs.analchem.4c04328","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04328","url":null,"abstract":"<p><p>High-sensitivity fluorescent probes provide a powerful tool for understanding life processes and functioning mechanisms. Therefore, the development of a universal strategy to optimize probes holds substantial importance. Herein, we developed a novel strategy for common probe upgrades: rather than simply pursuing a higher fluorescence intensity of the probe itself, we tried to promote the detection sensitivity by enhancing the probe-substrate interactions. Fortified with polyionic polymers, self-assembled probes could be endowed with enhanced attractions to the substrate. In this work, we took the AChE-AuNCs detection system as a typical and important example to verify this concept of the \"enrichment-enhanced detection\" strategy (EED strategy). Two probes, AuNCs@GC and AuNCs@CMCS, with similar composing polymers (chitosan derivatives), microstructures, fluorescence profiles, and distinct charges were delicately designed and thoroughly studied. CMCS with an abundance of negatively charged carboxy groups plays an important role in the enrichment of thiocholine through electrostatic interactions. Thus, despite having similar composing components, structures, and almost identical fluorescence profiles, the negatively charged composite shows superior sensitivity (15.2-fold enhancement) and response time (2-fold faster) compared to the AuNCs@GC, thereby validating the feasibility of the EED strategy. Overall, our work validates the EED strategy and applies it to the accurate detection of AChE activity. We believe that this strategy offers substantial insights for the generalization and enhancement of advanced nanoprobes.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142749467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-28DOI: 10.1021/acs.analchem.4c05865
Yu Wang, Jing Zhou, Xue Chen, Rui Liu, Yi Lv
Aging is a critical global issue that contributes to the high incidence of Alzheimer's disease (AD). Blood screening emerges as the most promising measure for early diagnosis and intervention of AD due to its noninvasive and low cost. However, the practical application of AD blood screening confronts two significant challenges. First, due to the blood-brain barrier, the concentration of AD biomarkers in blood is much lower than that in cerebrospinal fluid. Second, simultaneous quantitative analysis of multiple biomarkers is necessary due to the low specificity of individual biomarkers. Herein, we propose DNAzyme-based 3D DNA walkers for the sensitive and multiplex detection of five AD-associated miRNA biomarkers: hsa-miR-125b, hsa-miR-342-3p, hsa-miR-29b, hsa-miR-191-5p, and hsa-miR-7d-5. The DNAzyme-based 3D DNA walkers provide highly efficient and autonomous amplification of the minimal biomarkers' quantities. The walking-released metal isotopes 89Y, 165Ho, 139La, 140Ce, and 159Tb can be sensitively detected by elemental mass spectrometry without any spectral overlap. The detection limit was achieved to be as low as 1.0 fmol. The proposed method was successfully applied to human serum samples with satisfactory spiked recoveries. With its high sensitivity and multiplexity capabilities, this metal isotope strategy may contribute to the early diagnosis and intervention of AD.
老龄化是导致阿尔茨海默病(AD)高发病率的一个重要全球性问题。血液筛查因其非侵入性和低成本而成为最有前景的早期诊断和干预阿尔茨海默病的措施。然而,AD 血液筛查的实际应用面临两个重大挑战。首先,由于血脑屏障的存在,血液中的 AD 生物标志物浓度远低于脑脊液中的浓度。其次,由于单个生物标志物的特异性较低,需要同时对多个生物标志物进行定量分析。在此,我们提出了基于DNA酶的三维DNA步行器,用于灵敏地多重检测五种与AD相关的miRNA生物标志物:hsa-miR-125b、hsa-miR-342-3p、hsa-miR-29b、hsa-miR-191-5p和hsa-miR-7d-5。基于 DNA 酶的三维 DNA 步行器可高效、自主地扩增最小生物标记物的数量。步行释放的金属同位素 89Y、165Ho、139La、140Ce 和 159Tb 可通过元素质谱灵敏地检测到,且无任何光谱重叠。检测限低至 1.0 fmol。该方法成功地应用于人体血清样品,加标回收率令人满意。这种金属同位素策略具有高灵敏度和多重性的特点,可能有助于AD的早期诊断和干预。
{"title":"Blood Screening of Femtomole Level Multiple Alzheimer's Disease Biomarkers by Metal Isotopic DNA Walkers.","authors":"Yu Wang, Jing Zhou, Xue Chen, Rui Liu, Yi Lv","doi":"10.1021/acs.analchem.4c05865","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05865","url":null,"abstract":"<p><p>Aging is a critical global issue that contributes to the high incidence of Alzheimer's disease (AD). Blood screening emerges as the most promising measure for early diagnosis and intervention of AD due to its noninvasive and low cost. However, the practical application of AD blood screening confronts two significant challenges. First, due to the blood-brain barrier, the concentration of AD biomarkers in blood is much lower than that in cerebrospinal fluid. Second, simultaneous quantitative analysis of multiple biomarkers is necessary due to the low specificity of individual biomarkers. Herein, we propose DNAzyme-based 3D DNA walkers for the sensitive and multiplex detection of five AD-associated miRNA biomarkers: hsa-miR-125b, hsa-miR-342-3p, hsa-miR-29b, hsa-miR-191-5p, and hsa-miR-7d-5. The DNAzyme-based 3D DNA walkers provide highly efficient and autonomous amplification of the minimal biomarkers' quantities. The walking-released metal isotopes <sup>89</sup>Y, <sup>165</sup>Ho, <sup>139</sup>La, <sup>140</sup>Ce, and <sup>159</sup>Tb can be sensitively detected by elemental mass spectrometry without any spectral overlap. The detection limit was achieved to be as low as 1.0 fmol. The proposed method was successfully applied to human serum samples with satisfactory spiked recoveries. With its high sensitivity and multiplexity capabilities, this metal isotope strategy may contribute to the early diagnosis and intervention of AD.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142737752","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
N6-methyladenosine (m6A) demethylase is essential for enzymatically removing methyl groups from m6A modifications and is significantly implicated in the pathogenesis and advancement of various cancers, which makes it a promising biomarker for cancer detection and research. As a proof of concept, we select the fat mass and obesity-associated protein (FTO) as the target m6A demethylase and develop a dandelion-like nanoprobe-based sensing platform by employing biobar-code amplification (BCA) for signal amplification. We construct two meticulously designed three-dimensional structures: reporter-loaded gold nanoparticles (Reporter@Au NPs) and substrate-loaded magnetic microparticles (Substrate@MMPs), which can self-assemble to form dandelion-like nanoprobes via complementary base pairing. In the presence of FTO, the m6A-containing substrates are demethylated, triggering the MazF-assisted cleavage reaction and thereby releasing the Reporter@Au NPs. Furthermore, upon digestion by exonucleases, the Reporter@Au NPs may liberate a significant quantity of Cy3 signals. Remarkably, the combined effects of Au NPs’ superior enrichment capacity, MMPs’ exceptional magnetic separation efficiency, and the precision of the single-molecule detection platform endow the FTO sensor with exceptional sensitivity and specificity with a detection limit of 7.46 × 10–16 M. Additionally, this method offers a versatile platform for the detection of m6A demethylase and the screening of corresponding inhibitors, thereby advancing clinical diagnosis and drug development.
{"title":"Assembly of Dandelion-Like Nanoprobe for Sensitive Detection of N6-Methyladenosine Demethylase by Single-Molecule Counting","authors":"Yan Zhang, Xin-yan Wang, Ming-hao Liu, Wenfei Li, Chaoyi Ren, Chen-chen Li, Yukui Ma, Chun-yang Zhang","doi":"10.1021/acs.analchem.4c04218","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04218","url":null,"abstract":"N6-methyladenosine (m6A) demethylase is essential for enzymatically removing methyl groups from m6A modifications and is significantly implicated in the pathogenesis and advancement of various cancers, which makes it a promising biomarker for cancer detection and research. As a proof of concept, we select the fat mass and obesity-associated protein (FTO) as the target m6A demethylase and develop a dandelion-like nanoprobe-based sensing platform by employing biobar-code amplification (BCA) for signal amplification. We construct two meticulously designed three-dimensional structures: reporter-loaded gold nanoparticles (Reporter@Au NPs) and substrate-loaded magnetic microparticles (Substrate@MMPs), which can self-assemble to form dandelion-like nanoprobes via complementary base pairing. In the presence of FTO, the m6A-containing substrates are demethylated, triggering the MazF-assisted cleavage reaction and thereby releasing the Reporter@Au NPs. Furthermore, upon digestion by exonucleases, the Reporter@Au NPs may liberate a significant quantity of Cy3 signals. Remarkably, the combined effects of Au NPs’ superior enrichment capacity, MMPs’ exceptional magnetic separation efficiency, and the precision of the single-molecule detection platform endow the FTO sensor with exceptional sensitivity and specificity with a detection limit of 7.46 × 10<sup>–16</sup> M. Additionally, this method offers a versatile platform for the detection of m6A demethylase and the screening of corresponding inhibitors, thereby advancing clinical diagnosis and drug development.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"25 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142718734","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-27DOI: 10.1021/acs.analchem.4c03946
Zuzana Lásko, Tomáš Hájek, Robert Jirásko, Ondřej Peterka, Petr Šimek, Peter J. Schoenmakers, Michal Holčapek
Multidimensional chromatography offers enhanced chromatographic resolution and peak capacity, which are crucial for analyzing complex samples. This study presents a novel comprehensive online multidimensional chromatography method for the lipidomic analysis of biological samples, combining lipid class and lipid species separation approaches. The method combines optimized reversed-phase ultrahigh-performance liquid chromatography (RP-UHPLC) in the first dimension, utilizing a 150 mm long C18 column, with ultrahigh-performance supercritical fluid chromatography (UHPSFC) in the second dimension, using a 10 mm long silica column, both with sub-2 μm particles. A key advantage of employing UHPSFC in the second dimension is its ability to perform ultrafast analysis using gradient elution with a sampling time of 0.55 min. This approach offers a significant increase in the peak capacity. Compared to our routinely used 1D methods, the peak capacity of the 4D system is 10 times higher than RP-UHPLC and 18 times higher than UHPSFC. The entire chromatographic system is coupled with a high-resolution quadrupole-time-of-flight (QTOF) mass analyzer using electrospray ionization (ESI) in both full-scan and tandem mass spectrometry (MS/MS) and with positive- and negative-ion polarities, enabling the detailed characterization of the lipidome. The confident identification of lipid species is achieved through characteristic ions in both polarity modes, information from MS elevated energy (MSE) and fast data-dependent analysis scans, and mass accuracy below 5 ppm. This analytical method has been used to characterize the lipidomic profile of the total lipid extract from human plasma, which has led to the identification of 298 lipid species from 16 lipid subclasses.
{"title":"Four-Dimensional Lipidomic Analysis Using Comprehensive Online UHPLC × UHPSFC/Tandem Mass Spectrometry","authors":"Zuzana Lásko, Tomáš Hájek, Robert Jirásko, Ondřej Peterka, Petr Šimek, Peter J. Schoenmakers, Michal Holčapek","doi":"10.1021/acs.analchem.4c03946","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c03946","url":null,"abstract":"Multidimensional chromatography offers enhanced chromatographic resolution and peak capacity, which are crucial for analyzing complex samples. This study presents a novel comprehensive online multidimensional chromatography method for the lipidomic analysis of biological samples, combining lipid class and lipid species separation approaches. The method combines optimized reversed-phase ultrahigh-performance liquid chromatography (RP-UHPLC) in the first dimension, utilizing a 150 mm long C18 column, with ultrahigh-performance supercritical fluid chromatography (UHPSFC) in the second dimension, using a 10 mm long silica column, both with sub-2 μm particles. A key advantage of employing UHPSFC in the second dimension is its ability to perform ultrafast analysis using gradient elution with a sampling time of 0.55 min. This approach offers a significant increase in the peak capacity. Compared to our routinely used 1D methods, the peak capacity of the 4D system is 10 times higher than RP-UHPLC and 18 times higher than UHPSFC. The entire chromatographic system is coupled with a high-resolution quadrupole-time-of-flight (QTOF) mass analyzer using electrospray ionization (ESI) in both full-scan and tandem mass spectrometry (MS/MS) and with positive- and negative-ion polarities, enabling the detailed characterization of the lipidome. The confident identification of lipid species is achieved through characteristic ions in both polarity modes, information from MS elevated energy (MS<sup>E</sup>) and fast data-dependent analysis scans, and mass accuracy below 5 ppm. This analytical method has been used to characterize the lipidomic profile of the total lipid extract from human plasma, which has led to the identification of 298 lipid species from 16 lipid subclasses.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"187 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2024-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142718733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}