Pub Date : 2019-07-31DOI: 10.2174/1874070701913010077
Warren Réategui-Romero, Walter J. Cadenas-Vásquez, María E. King-Santos, Walter F. Zaldivar Alvarez, Ricardo Posadas
The Pb non-biodegradability results in bioaccumulation in living organisms causing serious health disorders. The present study aimed to investigate the capacity of Pb (II) adsorption in aqueous solutions using theBrassica nigraspecies as biosorbent.The present study was conducted using a synthetic solution with three Pb (II) concentrations (5, 15, and 30 ppm). TheB. nigrawas suitably treated until it became dry particles. After sifting it, three ranges of grain sizes were obtained. Samples of dry particles were analyzed before and after the biosorption to analyze their topography (SEM), as well as the elements on their surface (EDS). The influence of different operating variables on the biosorption of Pb (II) were analyzed. Kinetics of Pb (II) biosorption was analyzed with pseudo first and second order models. The biosorption in the equilibrium was studied with the Langmuir isotherm and Freundlich isotherm models.The biosorbentB. nigrashowed to be efficient for the adsorption of Pb (II). The most influential variables in the adsorption were pH, particle size, and biosorbent/solution ratio. The optimum pH for the adsorption of lead was 5 and removed 82.10% of lead from solution at 5 ppm, 82.24% at 15 ppm and 57.95% at 30 ppm. The results for the particle size between 177 and 297 μm were 82.65% for 5 ppm, 73.71% for 15 ppm, and 53.54% for 30 ppm. The biosorbent/solution ratio of 0.6 mg/mL or the 30 mg dose of biosorbent removed 80.26% for 5 ppm, 79.32% for 15 ppm, and 59.87% for 30 ppm. Biosorption isothermal data could be well interpreted by the Langmuir model with a maximum adsorption capacity of 53.476 mg/g of lead ion onB. nigrastem and roots biomass. The kinetic experimental data was properly correlated with the second-order kinetic model (R2= 0.9997). Thus, the best desorbing agent was HNO3(0.1N) for Pb (II) desorption.Our study showed that the herbB. nigra, without any chemical treatment, can be used to remove heavy metals such as Pb (II) from water and aqueous solution.
{"title":"Evaluation of Pb (II) Adsorption from Aqueous Solutions Using Brassica nigra as a Biosorbent","authors":"Warren Réategui-Romero, Walter J. Cadenas-Vásquez, María E. King-Santos, Walter F. Zaldivar Alvarez, Ricardo Posadas","doi":"10.2174/1874070701913010077","DOIUrl":"https://doi.org/10.2174/1874070701913010077","url":null,"abstract":"The Pb non-biodegradability results in bioaccumulation in living organisms causing serious health disorders. The present study aimed to investigate the capacity of Pb (II) adsorption in aqueous solutions using theBrassica nigraspecies as biosorbent.The present study was conducted using a synthetic solution with three Pb (II) concentrations (5, 15, and 30 ppm). TheB. nigrawas suitably treated until it became dry particles. After sifting it, three ranges of grain sizes were obtained. Samples of dry particles were analyzed before and after the biosorption to analyze their topography (SEM), as well as the elements on their surface (EDS). The influence of different operating variables on the biosorption of Pb (II) were analyzed. Kinetics of Pb (II) biosorption was analyzed with pseudo first and second order models. The biosorption in the equilibrium was studied with the Langmuir isotherm and Freundlich isotherm models.The biosorbentB. nigrashowed to be efficient for the adsorption of Pb (II). The most influential variables in the adsorption were pH, particle size, and biosorbent/solution ratio. The optimum pH for the adsorption of lead was 5 and removed 82.10% of lead from solution at 5 ppm, 82.24% at 15 ppm and 57.95% at 30 ppm. The results for the particle size between 177 and 297 μm were 82.65% for 5 ppm, 73.71% for 15 ppm, and 53.54% for 30 ppm. The biosorbent/solution ratio of 0.6 mg/mL or the 30 mg dose of biosorbent removed 80.26% for 5 ppm, 79.32% for 15 ppm, and 59.87% for 30 ppm. Biosorption isothermal data could be well interpreted by the Langmuir model with a maximum adsorption capacity of 53.476 mg/g of lead ion onB. nigrastem and roots biomass. The kinetic experimental data was properly correlated with the second-order kinetic model (R2= 0.9997). Thus, the best desorbing agent was HNO3(0.1N) for Pb (II) desorption.Our study showed that the herbB. nigra, without any chemical treatment, can be used to remove heavy metals such as Pb (II) from water and aqueous solution.","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"44 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126229579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-07-29DOI: 10.2174/1874070701913010068
A. Popova, D. Mihaylova
Modern society has easy access to a vast informational database. The pursuit of sustainable green and healthy lifestyle leads to a series of food choices. Therefore, it is of importance to provide reliable, comprehensive and up-to-date information about food content including both nutritional and antinutritional elements. Nutrients are associated with positive effects on human health. Antinutrients, on the other hand, are far less popular for the contemporary man. They are highly bioactive, capable of deleterious effects as well as some beneficial health effects in man, and vastly available in plant-based foods. These compounds are of natural or synthetic origin, interfere with the absorption of nutrients, and can be responsible for some mischievous effects related to the nutrient absorption. Some of the common symptoms exhibited by a large amount of antinutrients in the body can be nausea, bloating, headaches, rashes, nutritional deficiencies, etc. Phytates, oxalates, and lectins are few of the well-known antinutrients. Science has acknowledged several ways in order to alter the negative influence antinutrients exhibiting on human health. Mechanical, thermal and biochemical approaches act synergistically to provide food with lower antinutritional levels. The purpose of this review was to synthesize the availability of antinutrients, clear their effect on the human body, and commemorate possible paths to disable them. This review provides links to the available literature as well as enables a systematic view of the recently published research on the topic of plant-based antinutrients.
{"title":"Antinutrients in Plant-based Foods: A Review","authors":"A. Popova, D. Mihaylova","doi":"10.2174/1874070701913010068","DOIUrl":"https://doi.org/10.2174/1874070701913010068","url":null,"abstract":"Modern society has easy access to a vast informational database. The pursuit of sustainable green and healthy lifestyle leads to a series of food choices. Therefore, it is of importance to provide reliable, comprehensive and up-to-date information about food content including both nutritional and antinutritional elements.\u0000 Nutrients are associated with positive effects on human health. Antinutrients, on the other hand, are far less popular for the contemporary man. They are highly bioactive, capable of deleterious effects as well as some beneficial health effects in man, and vastly available in plant-based foods. These compounds are of natural or synthetic origin, interfere with the absorption of nutrients, and can be responsible for some mischievous effects related to the nutrient absorption. Some of the common symptoms exhibited by a large amount of antinutrients in the body can be nausea, bloating, headaches, rashes, nutritional deficiencies, etc. Phytates, oxalates, and lectins are few of the well-known antinutrients.\u0000 Science has acknowledged several ways in order to alter the negative influence antinutrients exhibiting on human health. Mechanical, thermal and biochemical approaches act synergistically to provide food with lower antinutritional levels.\u0000 \u0000 The purpose of this review was to synthesize the availability of antinutrients, clear their effect on the human body, and commemorate possible paths to disable them. This review provides links to the available literature as well as enables a systematic view of the recently published research on the topic of plant-based antinutrients.","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"22 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115910692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-06-26DOI: 10.2174/1874070701913010059
Farzad Rahmati
Nanoparticles in biotechnology studies have played a significant role during the recent years and a wide range of them are being applied in food industries to prolong the microorganisms viability for more effective function in food processing and human gut. The main purpose of this research was evaluating the viability of two bacteria of Lactobacillus casei and Lactobacillus bulgaricus treated through double-coated beads including alginate Chitosan (First coating), and Eudragit S100 (Second coating) in simulated Gastrointestinal (GI) circumstance and yogurt. Free cells were employed as a control test and the results reflected that microencapsulated strains can survive longer than the normal cells. The number of free cells of L. casei and L. bulgaricus respectively decreased from 6.0×106 and 7.2×106 (In the first day) to 4.1×105 and 5.3×106 (In the day 32) in GI condition. Also, in the same intervals of time, the number of double-coated L. casei and L. bulgaricus decreased respectively from 6.9×108 and 7.1×108 to 4.5×107 and 3.1×107 in simulated condition. Furthermore, the pH rate steadily decreased, however, it was more dramatic in the first week, whereas the trend gradually became more moderate in the last two measurements. Results indicated that microencapsulation increases the bacteria viability. Also, the pattern of pH changes was similar for both strains and revealed that the rates of pH and acidity in both double-coated and normal forms are close to the control test in the final measurement.
{"title":"Impact of Microencapsulation on Two Probiotic Strains in Alginate Chitosan and Eudragit S100 Under Gastrointestinal and Normal Conditions","authors":"Farzad Rahmati","doi":"10.2174/1874070701913010059","DOIUrl":"https://doi.org/10.2174/1874070701913010059","url":null,"abstract":"\u0000 \u0000 Nanoparticles in biotechnology studies have played a significant role during the recent years and a wide range of them are being applied in food industries to prolong the microorganisms viability for more effective function in food processing and human gut.\u0000 \u0000 \u0000 \u0000 The main purpose of this research was evaluating the viability of two bacteria of Lactobacillus casei and Lactobacillus bulgaricus treated through double-coated beads including alginate Chitosan (First coating), and Eudragit S100 (Second coating) in simulated Gastrointestinal (GI) circumstance and yogurt. Free cells were employed as a control test and the results reflected that microencapsulated strains can survive longer than the normal cells.\u0000 \u0000 \u0000 \u0000 The number of free cells of L. casei and L. bulgaricus respectively decreased from 6.0×106 and 7.2×106 (In the first day) to 4.1×105 and 5.3×106 (In the day 32) in GI condition. Also, in the same intervals of time, the number of double-coated L. casei and L. bulgaricus decreased respectively from 6.9×108 and 7.1×108 to 4.5×107 and 3.1×107 in simulated condition. Furthermore, the pH rate steadily decreased, however, it was more dramatic in the first week, whereas the trend gradually became more moderate in the last two measurements.\u0000 \u0000 \u0000 \u0000 Results indicated that microencapsulation increases the bacteria viability. Also, the pattern of pH changes was similar for both strains and revealed that the rates of pH and acidity in both double-coated and normal forms are close to the control test in the final measurement.\u0000","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"117013445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-04-30DOI: 10.2174/1874070701913010037
S. Zafar, Aiman Zafar
In this article, silver nanoparticles (AgNPs) were synthesized by the biological green technique, using the aqueous extracts obtained from fruits of Phoenix dactylifera (date palm). This method is simple, rapid, non-toxic, and sustainable, and substitutes for the conventional physical/chemical methods. The cytotoxic activities of AgNPs derived from date fruit extract have not been mentioned in the earlier studies. The biosynthesized AgNPs are analyzed by Fourier transform infrared spectroscopy (FT-IR), UV-visible spectroscopy (UV-vis), and Transmission Electron Microscopy (TEM) methods. The assessment of antimicrobial effect towards human pathogenic microbial strains and their potential cytotoxicity against human breast cancer cell lines (MCF-7) were also evaluated. FT-IR spectral studies showed that phytomolecules such as carbohydrates, phenolic acids and flavonoids present in date fruits extract are involved in the reduction and capping of the AgNPs. UV-vis spectrum revealed Surface Plasmon Resonance (SPR) at 425 nm which attributes the presence of AgNPs in aqueous extract. TEM micrographs showed that AgNPs particle diameter is ranged from 20 nm to 100 nm with spherical morphology. The biosynthesized AgNPs exhibited significant antimicrobial activity towards human microbial strains. Phytosynthesized NPs also induce cytotoxicity via necrosis, apoptosis and mitodepressive mechanisms that can disturb the cellular components at various stages of cell cycle. The present study concludes that biologically synthesized AgNPs using Phoenix dactylifera is cost-effective, rapid, non-toxic, and sustainable and can be effectively used as an adjunct for the treatment of breast carcinoma.
{"title":"Biosynthesis and Characterization of Silver Nanoparticles Using Phoenix dactylifera Fruits Extract and their In Vitro Antimicrobial and Cytotoxic Effects","authors":"S. Zafar, Aiman Zafar","doi":"10.2174/1874070701913010037","DOIUrl":"https://doi.org/10.2174/1874070701913010037","url":null,"abstract":"\u0000 \u0000 In this article, silver nanoparticles (AgNPs) were synthesized by the biological green technique, using the aqueous extracts obtained from fruits of Phoenix dactylifera (date palm). This method is simple, rapid, non-toxic, and sustainable, and substitutes for the conventional physical/chemical methods. The cytotoxic activities of AgNPs derived from date fruit extract have not been mentioned in the earlier studies.\u0000 \u0000 \u0000 \u0000 The biosynthesized AgNPs are analyzed by Fourier transform infrared spectroscopy (FT-IR), UV-visible spectroscopy (UV-vis), and Transmission Electron Microscopy (TEM) methods. The assessment of antimicrobial effect towards human pathogenic microbial strains and their potential cytotoxicity against human breast cancer cell lines (MCF-7) were also evaluated.\u0000 \u0000 \u0000 \u0000 FT-IR spectral studies showed that phytomolecules such as carbohydrates, phenolic acids and flavonoids present in date fruits extract are involved in the reduction and capping of the AgNPs. UV-vis spectrum revealed Surface Plasmon Resonance (SPR) at 425 nm which attributes the presence of AgNPs in aqueous extract. TEM micrographs showed that AgNPs particle diameter is ranged from 20 nm to 100 nm with spherical morphology. The biosynthesized AgNPs exhibited significant antimicrobial activity towards human microbial strains. Phytosynthesized NPs also induce cytotoxicity via necrosis, apoptosis and mitodepressive mechanisms that can disturb the cellular components at various stages of cell cycle.\u0000 \u0000 \u0000 \u0000 The present study concludes that biologically synthesized AgNPs using Phoenix dactylifera is cost-effective, rapid, non-toxic, and sustainable and can be effectively used as an adjunct for the treatment of breast carcinoma.\u0000","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"577 1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132677469","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-04-30DOI: 10.2174/1874070701913010047
S. Sahu, S. Shera, R. Banik
Streptomyces olivaceusMTCC 6820 is a potent microorganism for cholesterol oxidase (ChOx) production through the submerged fermentation process. Statistical optimization of the process parameters for submerged fermentation enhances the production of enzymes.This work is aimed to optimize the culture conditions for the fermentative production of cholesterol oxidase byStreptomyces olivaceusMTCC 6820 using combined Response Surface Methodology (RSM) and Artificial Neural Network (ANN) techniques.The ChOx production (U/ml) was modeled and optimized as a function of six independent variables (culture conditions) using RSM and ANN.ChOx production enhanced 2.2 fold,i.e1.9 ± 0.21 U/ml under unoptimized conditions to 4.2 ± 0.51 U/ml after the optimization of culture conditions. Higher coefficient of determination (R2= 97.09 %) for RSM and lower values of MSE (0.039) and MAPE (3.46 %) for ANN proved the adequacy of both the models. The optimized culture conditions predicted by RSMvs. ANN were pH (7.5), inoculum age (48 h), inoculum size (11.25 % v/v), fermentation period (72 h), incubation temperature (30°C) and shaking speed (175 rpm).The modeling, optimization and prediction abilities of both RSM and ANN methodologies were compared. The values of Pearson correlation coefficient (r) (ANN0.98> RSM0.95), regression coefficient (R2) between experimental activity, RSM and ANN predicted ChOx activity, respectively (ANN0.96> RSM0.90) and Absolute Average Deviation (AAD) for (ANN3.46%< RSM9.87%) substantiated better prediction ability of ANN than RSM. These statistical values indicated the superiority of ANN in capturing the non-linear behavior of the system.
{"title":"Optimization of Process Parameters for Cholesterol Oxidase Production by Streptomyces Olivaceus MTCC 6820","authors":"S. Sahu, S. Shera, R. Banik","doi":"10.2174/1874070701913010047","DOIUrl":"https://doi.org/10.2174/1874070701913010047","url":null,"abstract":"Streptomyces olivaceusMTCC 6820 is a potent microorganism for cholesterol oxidase (ChOx) production through the submerged fermentation process. Statistical optimization of the process parameters for submerged fermentation enhances the production of enzymes.This work is aimed to optimize the culture conditions for the fermentative production of cholesterol oxidase byStreptomyces olivaceusMTCC 6820 using combined Response Surface Methodology (RSM) and Artificial Neural Network (ANN) techniques.The ChOx production (U/ml) was modeled and optimized as a function of six independent variables (culture conditions) using RSM and ANN.ChOx production enhanced 2.2 fold,i.e1.9 ± 0.21 U/ml under unoptimized conditions to 4.2 ± 0.51 U/ml after the optimization of culture conditions. Higher coefficient of determination (R2= 97.09 %) for RSM and lower values of MSE (0.039) and MAPE (3.46 %) for ANN proved the adequacy of both the models. The optimized culture conditions predicted by RSMvs. ANN were pH (7.5), inoculum age (48 h), inoculum size (11.25 % v/v), fermentation period (72 h), incubation temperature (30°C) and shaking speed (175 rpm).The modeling, optimization and prediction abilities of both RSM and ANN methodologies were compared. The values of Pearson correlation coefficient (r) (ANN0.98> RSM0.95), regression coefficient (R2) between experimental activity, RSM and ANN predicted ChOx activity, respectively (ANN0.96> RSM0.90) and Absolute Average Deviation (AAD) for (ANN3.46%< RSM9.87%) substantiated better prediction ability of ANN than RSM. These statistical values indicated the superiority of ANN in capturing the non-linear behavior of the system.","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"34 11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"120949484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-04-24DOI: 10.2174/1874070701913010027
V. Dobreva, B. Zhekova, G. Dobrev
Purification of enzymes by conventional methods such as precipitation and chromatographic techniques is a costly and time-consuming procedure and may lead to low yields of enzyme activity. Alternative liquid-liquid extraction methods such as Aqueous Two-Phase Systems (ATPS) and Three Phase Partitioning (TPP) are characterized by the high enzyme yields and purification degree. The objective of this study was the application of partitioning systems ATPS and TPP for purification of lipase produced in solid-state fermentation by Rhizopus arrhizus. ATPS and TPP were used for purification of lipase, obtained by solid state cultivation of Rhizopus arrhizus. Lipase was isolated with PEG4000/potassium sodium tartrate ATPS and the effect of the system composition, including PEG 4000 and potassium sodium tartrate concentrations on lipase partitioning was studied. When using 30% PEG4000/21% potassium sodium tartrate, lipase was distributed in the top phase, and the highest recovery yield of 217% and purification fold of 6.1 were achieved. It was found that at PEG4000 concentration of or higher than 15%, the enzyme was present in the top polymer-rich phase with a partitioning yield of over 90%. Upon application of TPP for lipase isolation, the effect of t-butanol concentration, ammonium sulfate concentration and pH on enzyme partitioning was investigated. The highest lipase recovery yield of 71% and 19.1-fold purification were achieved in the interfacial phase in the presence of 30% ammonium sulfate saturation with 1.0:0.5 crude extract/t-butanol ratio at pH 7 in a single step. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis and zymographic analysis showed significant purification of lipase by TPP and the presence of two multiple forms of the enzyme. ATPS (PEG4000/ Potassium sodium tartrate) and TPP (1.0:0.5 crude extract/t-butanol ratio, 30% ammonium sulfate saturation, pH 7) proved to be rapid methods for the isolation and purification of lipase and they can be used in downstream processing for industrial preparation of the enzyme.
{"title":"Use of Aqueous Two-Phase and Three-Phase Partitioning Systems for Purification of Lipase Obtained in Solid-State Fermentation by Rhizopus arrhizus","authors":"V. Dobreva, B. Zhekova, G. Dobrev","doi":"10.2174/1874070701913010027","DOIUrl":"https://doi.org/10.2174/1874070701913010027","url":null,"abstract":"\u0000 \u0000 Purification of enzymes by conventional methods such as precipitation and chromatographic techniques is a costly and time-consuming procedure and may lead to low yields of enzyme activity. Alternative liquid-liquid extraction methods such as Aqueous Two-Phase Systems (ATPS) and Three Phase Partitioning (TPP) are characterized by the high enzyme yields and purification degree.\u0000 \u0000 \u0000 \u0000 The objective of this study was the application of partitioning systems ATPS and TPP for purification of lipase produced in solid-state fermentation by Rhizopus arrhizus.\u0000 \u0000 \u0000 \u0000 ATPS and TPP were used for purification of lipase, obtained by solid state cultivation of Rhizopus arrhizus.\u0000 \u0000 \u0000 \u0000 Lipase was isolated with PEG4000/potassium sodium tartrate ATPS and the effect of the system composition, including PEG 4000 and potassium sodium tartrate concentrations on lipase partitioning was studied. When using 30% PEG4000/21% potassium sodium tartrate, lipase was distributed in the top phase, and the highest recovery yield of 217% and purification fold of 6.1 were achieved. It was found that at PEG4000 concentration of or higher than 15%, the enzyme was present in the top polymer-rich phase with a partitioning yield of over 90%. Upon application of TPP for lipase isolation, the effect of t-butanol concentration, ammonium sulfate concentration and pH on enzyme partitioning was investigated. The highest lipase recovery yield of 71% and 19.1-fold purification were achieved in the interfacial phase in the presence of 30% ammonium sulfate saturation with 1.0:0.5 crude extract/t-butanol ratio at pH 7 in a single step. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis and zymographic analysis showed significant purification of lipase by TPP and the presence of two multiple forms of the enzyme.\u0000 \u0000 \u0000 \u0000 ATPS (PEG4000/ Potassium sodium tartrate) and TPP (1.0:0.5 crude extract/t-butanol ratio, 30% ammonium sulfate saturation, pH 7) proved to be rapid methods for the isolation and purification of lipase and they can be used in downstream processing for industrial preparation of the enzyme.\u0000","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127033302","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-04-17DOI: 10.2174/1874070701913010018
Zin Quat Tan, Hui Yin Leow, David Charles Weerasingam Lee, K. Karisnan, A. A. Song, C. Mai, W. Yap, S. Lim, K. Lai
Microorganisms are the great sources of Natural Products (NPs); these are imperative to their survival apart from conferring competitiveness amongst each other within their environmental niches. Primary and secondary metabolites are the two major classes of NPs that help in cell development, where antimicrobial activity is closely linked with secondary metabolites. To capitalize on the effects of secondary metabolites, co-culture methods have been often used to develop an artificial microbial community that promotes the action of these metabolites. Different analytical techniques will subsequently be employed based on the metabolite specificity and sensitivity to further enhance the metabolite induction. Liquid Chromatography-Mass Spectrometry (LC-MS) and Gas Chromatography (GC)-MS are commonly used for metabolite separation while Nuclear Magnetic Resonance (NMR) and Mass Spectrometry (MS) have been used as tools to elucidate the structure of compounds. This review intends to discuss current systems in use for co-culture in addition to its advantages, with discourse into the investigation of specific techniques in use for the detailed study of secondary metabolites. Further advancements and focus on co-culture technologies are required to fully realize the massive potential in synthetic biological systems.
{"title":"Co-Culture Systems for the Production of Secondary Metabolites: Current and Future Prospects","authors":"Zin Quat Tan, Hui Yin Leow, David Charles Weerasingam Lee, K. Karisnan, A. A. Song, C. Mai, W. Yap, S. Lim, K. Lai","doi":"10.2174/1874070701913010018","DOIUrl":"https://doi.org/10.2174/1874070701913010018","url":null,"abstract":"Microorganisms are the great sources of Natural Products (NPs); these are imperative to their survival apart from conferring competitiveness amongst each other within their environmental niches. Primary and secondary metabolites are the two major classes of NPs that help in cell development, where antimicrobial activity is closely linked with secondary metabolites. To capitalize on the effects of secondary metabolites, co-culture methods have been often used to develop an artificial microbial community that promotes the action of these metabolites. Different analytical techniques will subsequently be employed based on the metabolite specificity and sensitivity to further enhance the metabolite induction. Liquid Chromatography-Mass Spectrometry (LC-MS) and Gas Chromatography (GC)-MS are commonly used for metabolite separation while Nuclear Magnetic Resonance (NMR) and Mass Spectrometry (MS) have been used as tools to elucidate the structure of compounds. This review intends to discuss current systems in use for co-culture in addition to its advantages, with discourse into the investigation of specific techniques in use for the detailed study of secondary metabolites. Further advancements and focus on co-culture technologies are required to fully realize the massive potential in synthetic biological systems.","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128124338","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-03-22DOI: 10.2174/1874070701913010006
Muhamed Adem, Dereje Beyene, T. Feyissa, K. Zhao, T. Jiang
Bamboos are perennial grasses classified under family Poaceae and subfamily Bambusoideae and are among the fastest growing plants on earth. Despite ecological and economic significances, Ethiopian lowland bamboo (O. abyssinica) lacks global gene expression under abiotic stress. Plastic pot germinated seedlings of O. abyssinica were subjected to 200 µm NaCl and 25% PEG-6000 (Poly Ethylene glycol) to induce salt and drought stress, respectively. Using the Illumina sequencing platform, fifteen cDNA libraries were constructed and sequenced to generate the first drought and salt stress transcriptome profiling of the species so as to elucidate genome-wide transcriptome changes in response to such stresses. Following quality control, 754,444,646 clean paired-ends reads were generated, and then de novo assembled into 406,181 unigenes. Functional annotation against the public databases presented annotation of 217,067 (53.4%) unigenes, where NCBI-Nr 203,777, Swissport 115,741, COG 81,632 and KEGG 80,587. Prediction of Transcripts Factors (TFs) have generated 4,332 TFs organized into 64 TF families. Analysis of Differentially Expressed Genes (DEGs) provided 65,471 genes where 569 genes belong to all stresses. Protein families with a higher number of differentially expressed genes include bZIP (49), WRKY (43), MYB (38), AP2/ERF (30), HD-ZIP (25) and MYB related (21). In addition to revealing the genome-wide level appraisal of transcriptome resources of the species, this study also uncovered the comprehensive understanding of key stress responsive protein-coding genes, protein families and pathways which could be used as the basis for further studies.
{"title":"De Novo Assembly and Transcriptome Profiling of Ethiopian Lowland Bamboo Oxytenanthera Abyssinica (A. rich) Munro Under Drought and Salt Stresses","authors":"Muhamed Adem, Dereje Beyene, T. Feyissa, K. Zhao, T. Jiang","doi":"10.2174/1874070701913010006","DOIUrl":"https://doi.org/10.2174/1874070701913010006","url":null,"abstract":"\u0000 \u0000 Bamboos are perennial grasses classified under family Poaceae and subfamily Bambusoideae and are among the fastest growing plants on earth. Despite ecological and economic significances, Ethiopian lowland bamboo (O. abyssinica) lacks global gene expression under abiotic stress.\u0000 \u0000 \u0000 \u0000 Plastic pot germinated seedlings of O. abyssinica were subjected to 200 µm NaCl and 25% PEG-6000 (Poly Ethylene glycol) to induce salt and drought stress, respectively. Using the Illumina sequencing platform, fifteen cDNA libraries were constructed and sequenced to generate the first drought and salt stress transcriptome profiling of the species so as to elucidate genome-wide transcriptome changes in response to such stresses.\u0000 \u0000 \u0000 \u0000 Following quality control, 754,444,646 clean paired-ends reads were generated, and then de novo assembled into 406,181 unigenes. Functional annotation against the public databases presented annotation of 217,067 (53.4%) unigenes, where NCBI-Nr 203,777, Swissport 115,741, COG 81,632 and KEGG 80,587. Prediction of Transcripts Factors (TFs) have generated 4,332 TFs organized into 64 TF families. Analysis of Differentially Expressed Genes (DEGs) provided 65,471 genes where 569 genes belong to all stresses. Protein families with a higher number of differentially expressed genes include bZIP (49), WRKY (43), MYB (38), AP2/ERF (30), HD-ZIP (25) and MYB related (21).\u0000 \u0000 \u0000 \u0000 In addition to revealing the genome-wide level appraisal of transcriptome resources of the species, this study also uncovered the comprehensive understanding of key stress responsive protein-coding genes, protein families and pathways which could be used as the basis for further studies.\u0000","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"48 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-03-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130767445","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-02-28DOI: 10.2174/1874070701913010001
F. Haghi, Neda Shirmohammadlou, Rabab Bagheri, Samar Jamali, H. Zeighami
Enterococci are part of the microbial flora of the gastrointestinal tract of animals and human and can be released into the environment through fecal materials. These microorganisms play an important role in the dissemination of antibiotic resistance genes. Vancomycin-Resistant Enterococci (VRE) have been obtained in municipal sewage, hospital and agricultural wastes and healthy carriers. The aim of this study was to investigate the frequency of VRE in sewage and fecal samples of healthy carriers.This study was performed on fecal specimens of 100 healthy carriers and 100 samples of sewage in Zanjan Province. Fecal and sewage samples were cultured on Trypticase Soy Agar and biochemical tests were performed for Enterococci identification. Antimicrobial susceptibility testing was performed as CLSI guidelines and vancomycin resistance was determined using the agar dilution method.Of 200 cultured samples, 141 isolates of Enterococci were detected. 64 isolates were detected from fecal and 77 were isolated from the sewage samples. Antibiotic resistance profile of fecal isolates was as follows: tetracycline (57.8%), ciprofloxacin (54.7%), phosphomycin (54.7%), erythromycin (51.5%), chloramphenicol (12.5%), amoxicillin (21.8%) and gatifloxacin (23.5%). Also for the sewage samples, the most antibiotic resistance was detected against ciprofloxacin (76.6%) followed by tetracycline (74%), erythromycin (68.8%), phosphomycin (61%). According to Agar dilution method, among 141 isolates of Enterococci, 15 (10.6%) isolates were vancomycin resistant: 11 of sewage isolates (14.3%) and 4 of the carrier isolates (6.2%).Our study describes the high frequency of VRE in municipal sewage and healthy carriers. Regarding the importance of VRE strains in the clinical and environment, it seems necessary to follow up on the issue.
{"title":"High Frequency of Vancomycin-Resistant Enterococci in Sewage and Fecal Samples of Healthy Carriers","authors":"F. Haghi, Neda Shirmohammadlou, Rabab Bagheri, Samar Jamali, H. Zeighami","doi":"10.2174/1874070701913010001","DOIUrl":"https://doi.org/10.2174/1874070701913010001","url":null,"abstract":"Enterococci are part of the microbial flora of the gastrointestinal tract of animals and human and can be released into the environment through fecal materials. These microorganisms play an important role in the dissemination of antibiotic resistance genes. Vancomycin-Resistant Enterococci (VRE) have been obtained in municipal sewage, hospital and agricultural wastes and healthy carriers. The aim of this study was to investigate the frequency of VRE in sewage and fecal samples of healthy carriers.This study was performed on fecal specimens of 100 healthy carriers and 100 samples of sewage in Zanjan Province. Fecal and sewage samples were cultured on Trypticase Soy Agar and biochemical tests were performed for Enterococci identification. Antimicrobial susceptibility testing was performed as CLSI guidelines and vancomycin resistance was determined using the agar dilution method.Of 200 cultured samples, 141 isolates of Enterococci were detected. 64 isolates were detected from fecal and 77 were isolated from the sewage samples. Antibiotic resistance profile of fecal isolates was as follows: tetracycline (57.8%), ciprofloxacin (54.7%), phosphomycin (54.7%), erythromycin (51.5%), chloramphenicol (12.5%), amoxicillin (21.8%) and gatifloxacin (23.5%). Also for the sewage samples, the most antibiotic resistance was detected against ciprofloxacin (76.6%) followed by tetracycline (74%), erythromycin (68.8%), phosphomycin (61%). According to Agar dilution method, among 141 isolates of Enterococci, 15 (10.6%) isolates were vancomycin resistant: 11 of sewage isolates (14.3%) and 4 of the carrier isolates (6.2%).Our study describes the high frequency of VRE in municipal sewage and healthy carriers. Regarding the importance of VRE strains in the clinical and environment, it seems necessary to follow up on the issue.","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2019-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114755237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2018-12-28DOI: 10.2174/1874070701811140282
A. Moncalvo, R. Dordoni, A. Silva, Fumi, S. DiPiazza, G. Spigno
Ochratoxin A is a nephrotoxin which may occur in wines characterised by higher pH than the average. In the last decades the mechanisms responsible for ochratoxin A reduction by lactic acid bacteria have been investigated and identified as mainly cell walls adsorption and / or enzymatic conversion to ochratoxin-α, a non-toxic metabolite. Since lactic acid bacteria are involved in the malolactic fermentation during the wine-making process, selected starter cultures could be exploited to guarantee safe ochratoxin A level in wines also from contaminated grapes. A lactic acid bacteria strain (Lactobacillus plantarum V22) was previously selected for its ability of both degrading ochratoxin A and carrying out malolactic fermentation at high pH. This study was aimed at assessing if the selected L. plantarum strain, can reduce ochratoxin A because it can use it as a carbon source. L. plantarum V22 was grown in the presence of ochratoxin A in two different synthetic substrates, with or without malic acid, monitoring the reduction of ochratoxin A and the presence of ochratoxin α as an indicator for a toxin enzymatic hydrolysis. The presence of residual not hydrolysed ochratoxin A bound to the bacteria cell walls was also evaluated to quantify the ochratoxin A removal due to simple adsorption. A significant reduction of 19.5 ± 2.0% in ochratoxin A concentration was observed only in the presence of malic acid. The quantified fraction of ochratoxin A adsorbed on cell walls was irrelevant and the metabolite ochratoxin α could not be detected. There is a possibility that L. plantarum V22 can degrade ochratoxin A through a not yet identified metabolic pathway.
{"title":"Ochratoxin A Removal by Lactobacillus Plantarum V22 in Synthetic Substrates","authors":"A. Moncalvo, R. Dordoni, A. Silva, Fumi, S. DiPiazza, G. Spigno","doi":"10.2174/1874070701811140282","DOIUrl":"https://doi.org/10.2174/1874070701811140282","url":null,"abstract":"\u0000 \u0000 Ochratoxin A is a nephrotoxin which may occur in wines characterised by higher pH than the average. In the last decades the mechanisms responsible for ochratoxin A reduction by lactic acid bacteria have been investigated and identified as mainly cell walls adsorption and / or enzymatic conversion to ochratoxin-α, a non-toxic metabolite. Since lactic acid bacteria are involved in the malolactic fermentation during the wine-making process, selected starter cultures could be exploited to guarantee safe ochratoxin A level in wines also from contaminated grapes. A lactic acid bacteria strain (Lactobacillus plantarum V22) was previously selected for its ability of both degrading ochratoxin A and carrying out malolactic fermentation at high pH.\u0000 \u0000 \u0000 \u0000 This study was aimed at assessing if the selected L. plantarum strain, can reduce ochratoxin A because it can use it as a carbon source.\u0000 \u0000 \u0000 \u0000 \u0000 L. plantarum V22 was grown in the presence of ochratoxin A in two different synthetic substrates, with or without malic acid, monitoring the reduction of ochratoxin A and the presence of ochratoxin α as an indicator for a toxin enzymatic hydrolysis. The presence of residual not hydrolysed ochratoxin A bound to the bacteria cell walls was also evaluated to quantify the ochratoxin A removal due to simple adsorption.\u0000 \u0000 \u0000 \u0000 A significant reduction of 19.5 ± 2.0% in ochratoxin A concentration was observed only in the presence of malic acid. The quantified fraction of ochratoxin A adsorbed on cell walls was irrelevant and the metabolite ochratoxin α could not be detected.\u0000 \u0000 \u0000 \u0000 There is a possibility that L. plantarum V22 can degrade ochratoxin A through a not yet identified metabolic pathway.\u0000","PeriodicalId":296126,"journal":{"name":"The Open Biotechnology Journal","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2018-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131618612","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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