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Enhanced leaf disease detection: UNet for segmentation and optimized EfficientNet for disease classification 增强叶片病害检测:用于分割的 UNet 和用于病害分类的优化 EfficientNet
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-09-14 DOI: 10.1016/j.simpa.2024.100701
Jameer Kotwal , Ramgopal Kashyap , Pathan Mohd Shafi , Vinod Kimbahune
This manuscript delineates the code developed for a published scholarly article aimed at supporting researchers in addressing plant leaf disease detection and classification (PLDC) challenges while evaluating the efficacy of various deep learning models. Furthermore, the research incorporates preprocessing strategies, correlation, segmentation employing the UNet model, feature extraction methods and EfficientNet model. The software model generates graphs such as confusion matrix, ROC curve (Receiver Operating Characteristic), and visual representations of loss and accuracy graphs. The initial research was disseminated in the Multimedia Tools and Applications journal, and the accompanying dataset was also introduced in the Data in Brief journal.
本手稿描述了为一篇已发表的学术文章开发的代码,旨在支持研究人员应对植物叶片病害检测和分类(PLDC)挑战,同时评估各种深度学习模型的功效。此外,该研究还纳入了预处理策略、相关性、采用 UNet 模型的分割、特征提取方法和 EfficientNet 模型。软件模型可生成混淆矩阵、ROC 曲线(Receiver Operating Characteristic)等图形,以及损失和准确率图形的可视化表示。最初的研究成果在《多媒体工具与应用》期刊上发表,随附的数据集也在 《Data in Brief》期刊上介绍。
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引用次数: 0
FlowTransformer: A flexible python framework for flow-based network data analysis 流量转换器基于流量的网络数据分析的灵活 python 框架
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-09-07 DOI: 10.1016/j.simpa.2024.100702
Liam Daly Manocchio, Siamak Layeghy, Marius Portmann

FlowTransformer is a software framework tailored for building Machine Learning based Network Intrusion Detection Systems (NIDSs) leveraging transformer architectures known for their effectiveness in both NLP and more broadly for handling sequences of data. FlowTransformer is a flexible pipeline composed of a definable dataset definition, efficient preprocessing, and a flexible model construction, supporting different input-encodings, transformer models and classification heads. Furthermore, users can extend the framework by defining their own components. FlowTransformer’s contribution lies in its easy customisation, and ability to leverage transformers to enable enhanced long-term pattern detection, offering cybersecurity researchers and practitioners a valuable tool.

FlowTransformer 是一个软件框架,专为构建基于机器学习的网络入侵检测系统(NIDS)而设计,它利用了在 NLP 和更广泛的数据序列处理方面以高效著称的转换器架构。FlowTransformer 是一个灵活的管道,由可定义的数据集定义、高效的预处理和灵活的模型构建组成,支持不同的输入编码、转换器模型和分类头。此外,用户还可以通过定义自己的组件来扩展该框架。FlowTransformer 的贡献在于它易于定制,并能利用转换器实现增强的长期模式检测,为网络安全研究人员和从业人员提供了一个宝贵的工具。
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引用次数: 0
CALDINTAV: A simple software for dynamic analysis of high-speed railway bridges using the semi-analytical modal method CALDINTAV:采用半解析模态法对高速铁路桥梁进行动态分析的简易软件
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-09-07 DOI: 10.1016/j.simpa.2024.100700
Khanh Nguyen , José M. Goicolea

The increasing prevalence of high-speed trains necessitates robust analysis tools to ensure the safety and reliability of railway bridges. This paper presents a user-friendly software application designed for the dynamic analysis of railway bridges subjected to high-speed train loadings. Leveraging the semi-analytical modal method, the software offers a balanced approach that combines computational efficiency with high accuracy. Key features include an intuitive interface, rapid analysis capabilities, and reliable prediction of bridge responses, facilitating design optimization and maintenance planning. This software is poised to become an indispensable tool for structural engineers, researchers, and infrastructure planners.

随着高速列车的日益普及,需要强有力的分析工具来确保铁路桥梁的安全性和可靠性。本文介绍了一款用户友好型应用软件,专门用于对承受高速列车荷载的铁路桥梁进行动态分析。利用半解析模态法,该软件提供了一种兼顾计算效率和高精度的方法。其主要特点包括直观的界面、快速的分析能力和可靠的桥梁响应预测,有助于设计优化和维护规划。该软件有望成为结构工程师、研究人员和基础设施规划人员不可或缺的工具。
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引用次数: 0
QF-LCS: Quantum Field Lens Coding Simulator and Game Tool for Strong System State Predictions QF-LCS:用于强系统状态预测的量子场透镜编码模拟器和游戏工具
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-09-04 DOI: 10.1016/j.simpa.2024.100703
Philip Baback Alipour, Thomas Aaron Gulliver

A quantum field lens coding simulator (QF-LCS) is presented on a high-level end-user application software run by CLI GUI with custom commands input by the user to process, analyze, validate QF-LC algorithm (QF-LCA) datasets in a QF-LC Python game. On the low-level system software, measurement data are acquired from quantum computers. The datasets contain these measurement data, processed and classified according to QF-LCA circuit design and steps determining system states and their prediction. This software, impacts advances made in applied sciences, statistics, law and physics, where data validation of samples including system simulation projecting and predicting events are achieved.

量子场透镜编码模拟器(QF-LCS)是一个高级终端用户应用软件,通过 CLI ⟷ GUI 运行,用户输入自定义命令,在 QF-LC Python 游戏中处理、分析、验证 QF-LC 算法(QF-LCA)数据集。在底层系统软件中,测量数据来自量子计算机。数据集包含这些测量数据,并根据确定系统状态及其预测的 QF-LCA 电路设计和步骤进行处理和分类。该软件对应用科学、统计学、法学和物理学的进步产生了影响,实现了包括系统模拟预测事件在内的样本数据验证。
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引用次数: 0
Assessing and improving the quality of Fortran code in scientific software: FortranAnalyser 评估和改进科学软件中 Fortran 代码的质量:FortranAnalyser
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-09-01 DOI: 10.1016/j.simpa.2024.100692
Michael García-Rodríguez , Juan A. Añel , Javier Rodeiro-Iglesias

Despite its age, Fortran remains essential in many scientific fields. Ensuring code quality in long-term projects with evolving standards is critical, but few tools analyse Fortran, and they are not free. We present FortranAnalyser, a multi-platform, static analysis tool designed to enhance Fortran code quality. This paper outlines its development, features, and comparison with other tools. Additionally, we demonstrate its effectiveness through real-world applications, such as improving the Fortran code in a major global climate model.

尽管年代久远,Fortran 仍然是许多科学领域必不可少的工具。在标准不断发展的长期项目中,确保代码质量至关重要,但分析 Fortran 的工具却很少,而且还不是免费的。我们推出的 FortranAnalyser 是一款多平台静态分析工具,旨在提高 Fortran 代码质量。本文概述了它的开发、功能以及与其他工具的比较。此外,我们还通过实际应用证明了它的有效性,例如改进了一个主要全球气候模型中的 Fortran 代码。
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引用次数: 0
qlty: Handling large tensors in scientific imaging deep-learning workflows qlty:在科学成像深度学习工作流程中处理大型张量
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-08-26 DOI: 10.1016/j.simpa.2024.100696
Petrus H. Zwart

In scientific imaging, deep learning has become a pivotal tool for image analytics. However, handling large volumetric datasets, which often exceed the memory capacity of standard GPUs, require special attention when subjected to deep learning efforts. This paper introduces qlty, a toolkit designed to address these challenges through tensor management techniques. qlty offers robust methods for subsampling, cleaning, and stitching of large-scale spatial data, enabling effective training and inference even in resource-limited environments.

在科学成像领域,深度学习已成为图像分析的重要工具。然而,处理大型体积数据集通常会超出标准 GPU 的内存容量,因此在进行深度学习时需要特别注意。qlty 提供了对大规模空间数据进行子采样、清理和拼接的强大方法,即使在资源有限的环境中也能进行有效的训练和推理。
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引用次数: 0
SpectroChat: A windows executable graphical user interface for chemometrics analysis of spectroscopic data SpectroChat:用于光谱数据化学计量学分析的窗口可执行图形用户界面
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-08-23 DOI: 10.1016/j.simpa.2024.100698
Md. Toukir Ahmed, Md Wadud Ahmed, Mohammed Kamruzzaman

“SpectroChat”, a user-friendly, windows-based graphical user interface (GUI) for chemometric analysis, is designed to avoid the complexity of high-level programming and expensive software subscriptions. Developed in Python, this software offers versatile data partitioning, spectral pre-processing, and an optimizable genetic algorithm (GA) for feature selection for spectroscopic data analysis. SpectroChat enables the execution of multivariate regression analyses with options for hyperparameter adjustments and saving model diagnostics. This open-source software, designed to alleviate resource constraints, streamlines chemometric studies without requiring advanced programming platforms.

"SpectroChat "是一款用户友好、基于视窗的图形用户界面(GUI),用于化学计量分析,旨在避免高级编程的复杂性和昂贵的软件订阅。该软件使用 Python 开发,提供多功能数据分区、光谱预处理和可优化的遗传算法(GA),用于光谱数据分析的特征选择。SpectroChat 可执行多变量回归分析,并提供超参数调整和保存模型诊断的选项。这款开源软件旨在缓解资源限制,无需高级编程平台即可简化化学计量学研究。
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引用次数: 0
PixSim: Enhancing high-resolution large-scale forest simulations PixSim:增强高分辨率大尺度森林模拟
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-08-22 DOI: 10.1016/j.simpa.2024.100695
Nicolas Cattaneo, Rasmus Astrup, Clara Antón-Fernández

PixSim is a flexible, open-source forest growth simulator designed to operate at the pixel level of high-resolution, wall-to-wall forest resource maps generated through remote sensing approaches. PixSim addresses the need to adapt forest growth simulators to the data produced by modern remote sensing-based forest inventories, rather than relying on stand-level averages from traditional field-based inventories. By operating at the pixel level, PixSim captures intra-stand variability in high-resolution forest resource maps, which is often overlooked by stand-level simulators. This capability aligns with the current focus on precision forestry, aimed at improving management decisions with localized data and small-scale management. Implemented in the R programming language, PixSim features minimal package dependencies, provides flexibility and scalability, and has been optimized for high-resolution, large-scale simulations, ensuring efficient computation. The simulator’s flexibility and open-source nature support the incorporation of management modules and the inclusion of climate change scenarios in simulations.

PixSim 是一种灵活的开源森林生长模拟器,设计用于在通过遥感方法生成的高分辨率、满墙森林资源地图的像素级上运行。PixSim 解决了森林生长模拟器与基于遥感的现代森林资源调查所产生的数据相适应的问题,而不是依赖于传统的基于实地调查的林分平均值。通过像素级操作,PixSim 可捕捉高分辨率森林资源地图中的林分内部变化,而林分级模拟器往往会忽略这一点。这一功能与当前对精准林业的关注相吻合,旨在通过本地化数据和小规模管理改进管理决策。PixSim 使用 R 编程语言实现,具有最小的软件包依赖性、灵活性和可扩展性,并针对高分辨率、大规模模拟进行了优化,以确保高效计算。该模拟器的灵活性和开源性支持在模拟中加入管理模块和气候变化情景。
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引用次数: 0
PostgREST Data Provider for React-Admin: Bootstrap the creation of user interfaces on top of PostgreSQL databases 用于 React-Admin 的 PostgREST 数据提供程序:在 PostgreSQL 数据库之上引导创建用户界面
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-08-22 DOI: 10.1016/j.simpa.2024.100699
Raphael Scheible

In today’s data-driven world, vast amounts of data are stored in relational databases like i2b2, often using middleware applications for delivery. PostgreSQL, a widely used open-source DBMS, offers advanced features, including Foreign Data Wrappers (FDWs) for integration with other DBMSs. However, accessing data typically requires SQL knowledge. RESTful APIs simplify data interactions, and tools like PostgREST convert PostgreSQL databases into RESTful APIs. Our work introduces a PostgREST Data Provider that bridges React-Admin with PostgREST. A demo application showcases its capabilities, using KeyCloak for authentication and integrating an i2b2 database with FDW, fuzzy full-text search with ZomboDB, and utilizing GRASCCO discharge letters linked to i2b2 patients.

在当今数据驱动的世界中,大量数据存储在 i2b2 等关系数据库中,通常使用中间件应用程序进行传输。PostgreSQL 是一种广泛使用的开源 DBMS,具有高级功能,包括用于与其他 DBMS 集成的外来数据封装器(FDW)。不过,访问数据通常需要 SQL 知识。RESTful API 简化了数据交互,PostgREST 等工具可将 PostgreSQL 数据库转换为 RESTful API。我们的工作介绍了 PostgREST 数据提供程序,它将 React-Admin 与 PostgREST 连接起来。一个演示应用程序展示了它的功能,包括使用 KeyCloak 进行身份验证,将 i2b2 数据库与 FDW 集成,使用 ZomboDB 进行模糊全文搜索,以及利用 GRASCCO 出院信链接到 i2b2 患者。
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引用次数: 0
Virtual reality implementation of the Corsi test and pilot study on acceptance 科尔西试验的虚拟现实实施和接受试验研究
IF 1.3 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-08-22 DOI: 10.1016/j.simpa.2024.100693
Patrícia Szabó , Patrik Filotás , Cecilia Sik-Lanyi , Soma Zsebi , Renáta Cserjési

This article explores the serious application of virtual reality (VR) for assessing spatial memory, focusing on the Corsi test. Developed using the Unity game engine, this application allows for more convenient parameter modification and faster evaluation through digital iterations. The use of VR technology enhances precision, reliability, and user immersion. This article details the developmental stages and psychophysiological responses of participants performing the task in VR. Results from a trial with 14 participants indicated reduced heart rate and improved outcomes compared with traditional methods. This highlights the potential of VR integration to enhance the accuracy, flexibility, and participant comfort in assessment procedures.

本文探讨了虚拟现实(VR)在空间记忆评估中的应用,重点是柯西测试。该应用使用 Unity 游戏引擎开发,通过数字迭代,可以更方便地修改参数并加快评估速度。VR 技术的使用提高了精确度、可靠性和用户沉浸感。本文详细介绍了在 VR 中执行任务的参与者的发展阶段和心理生理反应。14 名参与者的试验结果表明,与传统方法相比,心率降低,结果改善。这凸显了 VR 集成在提高评估程序的准确性、灵活性和参与者舒适度方面的潜力。
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引用次数: 0
期刊
Software Impacts
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