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The ILR3-NRTs/NIA1/SWEET12 module regulates nitrogen uptake and utilization in apple. ilr3 - nrt /NIA1/SWEET12模块调控苹果氮素吸收和利用。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-09-03 DOI: 10.1186/s43897-025-00172-0
Hong-Liang Li, Ran-Xin Liu, Xiang Wu, Xin-Long Guo, Shan-Shan Li, Tian-Tian Wang, Yan-Yan Guo, Xiao-Fei Wang, Chun-Xiang You

Nitrogen (N) is essential for the physiological metabolism, growth, and development of plants. Plants have evolved a complex regulatory network for the efficient regulation of N uptake and utilization to adapt to fluctuations in environmental N levels. However, the mechanisms underlying the regulation of N absorption and utilization in apple remain unclear. Here, we identified MdILR3 (IAA-LEUCINE RESISTANT3) as an upstream regulator of MdNRT2.4 through yeast one-hybrid (Y1H) screening. MdILR3 overexpression significantly up-regulated the expression of MdNRT2.3/2.4 and MdNIA1, resulting in an increase in nitrate content and nitrate reductase activity. Y1H and EMSA assays revealed that MdILR3 directly interacted with the promoters of MdNRT2.3/2.4 and MdNIA1. Furthermore, MdILR3 can directly bind to the promoter of MdSWEET12 and activate its expression, thereby regulating sucrose transport to provide energy for N uptake in roots. In summary, we provide physiological and molecular evidence suggesting that MdILR3 may positively regulate nitrate response by activating the expression of genes related to N uptake and sugar transport. Our findings suggest that genetic improvements in apple could enhance its ability to absorb and utilize N.

氮(N)是植物生理代谢、生长发育所必需的。植物为了适应环境氮水平的波动,进化出了一个复杂的调控网络,可以有效地调控氮素的吸收和利用。然而,苹果对氮的吸收和利用调控机制尚不清楚。在这里,我们通过酵母单杂交(Y1H)筛选发现MdILR3 (IAA-LEUCINE RESISTANT3)是MdNRT2.4的上游调节因子。MdILR3过表达显著上调MdNRT2.3/2.4和MdNIA1的表达,导致硝酸盐含量和硝酸盐还原酶活性增加。Y1H和EMSA分析显示,MdILR3直接与MdNRT2.3/2.4和MdNIA1的启动子相互作用。此外,MdILR3可以直接结合MdSWEET12的启动子并激活其表达,从而调节蔗糖运输,为根系吸收N提供能量。综上所述,我们提供的生理和分子证据表明,MdILR3可能通过激活与氮吸收和糖转运相关的基因表达来积极调节硝酸盐反应。结果表明,对苹果进行遗传改良可以提高其对氮素的吸收和利用能力。
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引用次数: 0
ClPS1 gene-mediated manipulation of 2n pollen formation enables the creation of triploid seedless watermelon. ClPS1基因介导的2n花粉形成调控可以产生三倍体无籽西瓜。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-09-02 DOI: 10.1186/s43897-025-00170-2
Wenyu Pang, Qiaran Wang, Chenxin Li, Wenbing He, Jiafa Wang, Shujuan Tian, Li Yuan

Seedless watermelons are increasingly dominating the consumer market due to their convenience and high quality. However, traditional triploid watermelon breeding faces challenges such as long breeding cycles and low survival rates of triploid F1 progeny, severely hindering both breeding and production. In this study, we identified the ClPS1 gene as being associated with the formation of 2n gametes in watermelon. Expression analysis revealed that ClPS1 is highly expressed during meiosis and microsporogenesis. Using CRISPR/Cas9, we generated ClPS1-targeted mutants, which disrupted chromosome segregation at metaphase II. This led to the production of diploid male spores and abnormal division of male spores, ultimately generating diploid pollen grains, while female meiosis remained unaffected. Moreover, self-fertilization or crosses using these mutants as paternal parents yielded triploid and aneuploid watermelons. Our findings demonstrate, for the first time, the molecular manipulation of 2n gametes to create triploid seedless watermelons, offering new insights into polyploid breeding and evolutionary studies in the Cucurbitaceae family and other species.

无籽西瓜因其方便和高品质而日益主导着消费市场。然而,传统的三倍体西瓜育种面临育种周期长、三倍体F1后代成活率低等挑战,严重阻碍了西瓜的育种和生产。在本研究中,我们发现ClPS1基因与西瓜2n个配子的形成有关。表达分析表明,ClPS1在减数分裂和小孢子发生过程中高度表达。利用CRISPR/Cas9,我们产生了clps1靶向突变体,该突变体破坏了中期II的染色体分离。这导致二倍体雄性孢子的产生和雄性孢子的异常分裂,最终产生二倍体花粉粒,而雌性减数分裂不受影响。此外,自交受精或将这些突变体作为父本杂交,可以获得三倍体和非整倍体西瓜。我们的研究结果首次证明了2n个配子的分子操纵可以产生三倍体无籽西瓜,为葫芦科和其他物种的多倍体育种和进化研究提供了新的见解。
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引用次数: 0
Apyrase in horticultural crops: insights into growth, stress adaptation and quality regulation. 园艺作物中的Apyrase:对生长、胁迫适应和质量调控的见解。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-09-01 DOI: 10.1186/s43897-025-00168-w
Ying Li, Youxia Shan, Shuting Zhang, Jun Zhang, Junxian He, Hongxia Qu, Xuewu Duan, Yueming Jiang

Apyrases are a kind of nucleoside triphosphate diphosphohydrolases that catalyze the removal of the terminal phosphate group from nucleoside triphosphate (NTP) or nucleoside diphosphate (NDP). They also function either intracellularly or extracellularly in mediating the NTP/NDP homeostasis critical for plant growth, development, senescence, stress response and adaptation. Initial studies elucidated the biochemistry, structure and function of plant apyrases, while the recent progresses include the crystallography, newly discovered interaction partners and downstream targets for diverse apyrases. Furthermore, these apyrases play diverse roles in horticultural crops with the new recognition of extracellular ATP (eATP) receptors. This review summarized the types, structures, biochemical and physiological functions of plant apyrases and highlighted their roles in plant growth, development, biotic/abiotic stress responses and adaptation. The physiological activities among the apyrases, eATP with its receptor and eATP/iATP homeostasis, were reviewed. In particular, the quality formation / deterioration of postharvest horticultural crops caused by apyrases was emphasized. This paper reviewed the recent advances in the multiple roles of apyrases in horticultural crops and provided insights into the regulation of physiological activities by the enzyme from molecular network perspectives.

apyrase是一种催化三磷酸核苷(NTP)或二磷酸核苷(NDP)末端磷酸基去除的核苷二磷酸水解酶。它们还在细胞内或细胞外介导NTP/NDP稳态,对植物的生长、发育、衰老、胁迫反应和适应至关重要。初步研究阐明了植物apyrase的生物化学、结构和功能,而最近的研究进展包括晶体学、新发现的相互作用伙伴和下游靶点。此外,随着细胞外ATP (eATP)受体的新识别,这些酶在园艺作物中发挥着不同的作用。本文综述了植物脲酶的类型、结构、生化和生理功能,重点介绍了它们在植物生长发育、生物/非生物胁迫响应和适应中的作用。综述了磷酸酶的生理活性、eATP及其受体以及eATP/iATP的稳态。特别强调了由酵素引起的园艺作物采后品质的形成/恶化。本文综述了合成酶在园艺作物中的多种作用的最新进展,并从分子网络的角度对合成酶对生理活动的调控进行了探讨。
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引用次数: 0
The role, regulation and application of plant fruit trichomes. 植物果实毛状体的作用、调控及应用。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-08-08 DOI: 10.1186/s43897-025-00167-x
Ying Fu, Meng Li, Wei Zhang, Xueting Liu, Li Huang, Sen Zhang, Xinyue Liang, Liuxin Zhang, Kexuan Tang, Jocelyn K C Rose, Qian Shen

Trichomes, hair-like specialized epidermal structures on the surface of most plant organs, play key roles in plant defense against herbivores, reducing water loss, and shielding plants from UV radiation, among other functions. Controlling trichome development and the biosynthesis of trichome-derived specialized metabolites is a common defensive strategy adopted by plants to protect themselves from environmental stresses. However, trichomes exhibit distinctive functions in different plant tissues. Fruits, being the most economically valuable organs of many horticultural plants, often have trichomes on their surface. Nevertheless, there is a notable lack of research on the regulation and function of fruit trichomes, in comparison to the extensive studies conducted on trichomes in other plant tissues. Further investigation is needed to elucidate the specific functions of fruit trichomes. The regulation of plant trichome development and the multiple roles of trichomes represent a dynamic area of plant biology with significant implications for agriculture and biotechnology. This review aims to enhance the understanding of the functions, regulatory mechanisms, and applications of fruit trichomes, emphasizing their importance in advancing agricultural sustainability and productivity.

毛状体是大多数植物器官表面的毛发状特化表皮结构,在植物防御食草动物、减少水分流失和保护植物免受紫外线辐射等功能中起着关键作用。控制毛状体的发育和毛状体衍生的特殊代谢物的生物合成是植物保护自己免受环境胁迫的一种常见防御策略。然而,毛状体在不同的植物组织中表现出不同的功能。水果是许多园艺植物最具经济价值的器官,其表面通常有毛状体。然而,与对其他植物组织中毛状体的广泛研究相比,对果实毛状体的调控和功能的研究明显缺乏。水果毛状体的具体功能有待进一步研究。植物毛状体发育的调控和毛状体的多重作用代表了植物生物学的一个动态领域,对农业和生物技术具有重要意义。本文旨在加深对水果毛状体的功能、调控机制及其应用的认识,强调其在促进农业可持续性和生产力方面的重要性。
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引用次数: 0
Mechanism mediating the biosynthesis of the anti-insect volatile (Z)-3-hexenyl acetate in Acacia confusa Merr., an intercropping plant in tea plantations. 刺槐抗虫挥发物(Z)-3-己烯酯乙酸酯生物合成的调控机制。茶园的间作植物。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-08-07 DOI: 10.1186/s43897-025-00165-z
Guotai Jian, Jianlong Li, Yong Wu, Chengshun Liu, Ronghua Li, Jiajia Qian, Yongxia Jia, Hanxiang Li, Jinchi Tang, Lanting Zeng

Intercropping tea plants with Acacia confusa Merr. offers an environmentally sustainable approach to insect population control in tea plantations. However, the primary compounds in A. confusa responsible for this effect and their biosynthetic mechanisms remain undetermined. This study identified (Z)-3-hexenyl acetate, (Z)-3-hexenol, and 1-hexanol as the major volatiles in A. confusa. Field experiments demonstrated that all three compounds affected the tea leafhopper, a significant pest. (Z)-3-Hexenyl acetate repelled leafhoppers, while the other two compounds attracted them. Leafhopper feeding on tea leaves significantly decreased after fumigation with (Z)-3-hexenyl acetate, potentially altering the metabolism of defensive substances in tea leaves. These findings suggest (Z)-3-hexenyl acetate as a crucial component for pest control in tea plantations intercropped with A. confusa. Furthermore, the study identified the nucleus- and cytoplasm-localized AcAAT4 in A. confusa as responsible for (Z)-3-hexenyl acetate biosynthesis. Notably, AcAAT4 expression and the production of the upstream transcription factor AcMYC2b corresponded to the (Z)-3-hexenyl acetate emission pattern. The research also elucidated the positive regulatory effects of nucleus-localized AcMYC2b on AcAAT4 expression. These findings elucidate the molecular basis of (Z)-3-hexenyl acetate emission from A. confusa and provide a theoretical foundation for enhancing intercropping practices in tea plantations.

茶树与金合欢间作。为茶园害虫控制提供了一种环境可持续的方法。然而,造成这种效果的主要化合物及其生物合成机制尚不清楚。本研究鉴定出(Z)-3-己烯乙酸酯、(Z)-3-己烯醇和1-己醇是鸢尾中挥发物的主要成分。田间试验表明,这三种化合物都能影响茶叶蝉,这是一种重要的害虫。(Z)-3-乙酸己烯酯对叶蝉有排斥作用,而其他两种化合物对叶蝉有吸引作用。经乙酸(Z)-3-己烯酯熏蒸后,叶蝉对茶叶的取食显著减少,可能改变了茶叶中防御物质的代谢。这些结果表明乙酸(Z)-3-己烯酯是间作茶园害虫防治的关键成分。此外,该研究还发现了位于细胞核和细胞质上的AcAAT4负责(Z)-3-乙酸己烯酯的生物合成。值得注意的是,AcAAT4的表达和上游转录因子AcMYC2b的产生符合(Z)-3-乙酸己烯酯的发射模式。本研究还阐明了核定位AcMYC2b对AcAAT4表达的正向调控作用。这些发现阐明了茶树(Z)-3-己烯乙酸酯释放的分子基础,为加强茶园间作提供了理论依据。
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引用次数: 0
Chloroplast acetyltransferase GNAT2 acts as a redox-regulated switch for state transitions in tomato. 番茄叶绿体乙酰转移酶GNAT2是氧化还原调控的状态转换开关。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-08-06 DOI: 10.1186/s43897-025-00164-0
Xiaoyun Wang, Jianghao Wu, Hongxin Li, Ying Liu, Dexian Han, Danhui Dong, Jialong Zhang, Lixin Zhang, Na Zhang, Yang-Dong Guo

State transition is a dynamic process to balance the amount of light energy received by photosystem I (PSI) and photosystem II (PSII) so as to maintain an optimal photosynthetic yield and to minimize photo-damage in a fluctuating light environment. Recent studies show that chloroplast acetyltransferase participates in the acetylation of photosynthetic proteins and state transitions. However, the exact molecular mechanisms are poorly understood. In this study, we characterized a chloroplast acetyltransferase in Solanum lycopersicum, SlGNAT2, and found that mutants lacking this enzyme are deficient in state transitions and retarded in growth under fluctuating light. Acetyltransferase activity assays and fluorescence measurements suggest that 6Lys of mature SlLhcb2 protein is a target of SlGNAT2 and might be involved in state transitions. In addition, 131Cys-related redox changes of SlGNAT2 affect its acetylation activity on SlLhcb2 and influence the assembly of the PSI-LHCI-LHCII supercomplex. Therefore, we propose that the chloroplast redox state may regulate the activity of SlGNAT2 which in turn acetylates SlLhcb2 and mediates state transitions in higher plants.

状态转换是光系统I (PSI)和光系统II (PSII)在波动光环境中平衡接收光能的动态过程,以保持最佳光合产量并最大限度地减少光损伤。近年来的研究表明,叶绿体乙酰转移酶参与光合蛋白的乙酰化和状态转换。然而,确切的分子机制尚不清楚。在这项研究中,我们鉴定了茄属番茄叶绿体乙酰转移酶SlGNAT2,发现缺乏该酶的突变体在波动光下缺乏状态转换和生长迟缓。乙酰转移酶活性测定和荧光测定表明,成熟SlLhcb2蛋白的6Lys是SlGNAT2的靶标,可能参与了状态转变。此外,13cys相关的SlGNAT2氧化还原变化影响其对SlLhcb2的乙酰化活性,并影响PSI-LHCI-LHCII超配合物的组装。因此,我们认为叶绿体氧化还原状态可能调节SlGNAT2的活性,SlGNAT2反过来使SlLhcb2乙酰化并介导高等植物的状态转变。
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引用次数: 0
Integrative metabolome and genome-wide transcriptome analyses reveal the regulatory network for bioactive compound biosynthesis in lettuce upon UV-A radiation. 综合代谢组和全基因组转录组分析揭示了UV-A辐射下生菜生物活性化合物生物合成的调控网络。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-08-05 DOI: 10.1186/s43897-025-00163-1
Lingyan Zha, Shiwei Wei, Xiao Yang, Qingliang Niu, Danfeng Huang, Jingjin Zhang

Ultraviolet A (UV-A) radiation possesses great potential for enhancing the bioactive properties of vegetables and also has promising application prospects in controlled-environment agriculture. Lettuce is a widely cultivated model vegetable in controlled-environment agriculture with abundant health-beneficial bioactive compounds. However, the comprehensive regulatory effectiveness and mechanism of UV-A on bioactive compounds in lettuce remain largely unclear. To address this issue, we performed transcriptomic and metabolomic analyses of UV-A-treated lettuce to construct a global map of metabolic features and transcriptional regulatory networks for all major bioactive compounds. Our study revealed that UV-A promotes the accumulation of most phenylpropanoids and vitamins (provitamin A and vitamin E/K1/B6) but represses the biosynthesis of sesquiterpenoids. MYB transcription factors (TFs) are key activators of bioactive compound biosynthesis promoted by UV-A, whereas WRKY TFs primarily inhibit the production of sesquiterpenoids. Moreover, light signaling plays a crucial and direct regulatory function in stimulating the biosynthesis of phenylpropanoids and vitamins but not in that of sesquiterpenoids. In comparison, hormone signaling dominates a more decisive regulatory role in repressing sesquiterpenoid biosynthesis through working directly and interacting with WRKY TFs. This study paves the way toward an understanding of the bioactive compound regulation and genetic improvement of lettuce bioactivity value.

紫外线A (UV-A)辐射在提高蔬菜生物活性方面具有很大的潜力,在控制环境农业中具有广阔的应用前景。莴苣是一种具有丰富的有益健康的生物活性物质,被广泛栽培的环境农业示范蔬菜。然而,UV-A对生菜中生物活性物质的综合调控效果及其机制尚不清楚。为了解决这个问题,我们对uv - a处理的生菜进行了转录组学和代谢组学分析,以构建所有主要生物活性化合物的代谢特征和转录调控网络的全球图谱。我们的研究表明,UV-A促进了大多数苯丙素和维生素(维生素原A和维生素E/K1/B6)的积累,但抑制了倍半萜的生物合成。MYB转录因子是UV-A促进生物活性化合物生物合成的关键激活因子,而WRKY转录因子主要抑制倍半萜的产生。此外,光信号在刺激苯丙素和维生素的生物合成中起着至关重要的直接调节作用,而在倍半萜类化合物的生物合成中不起作用。相比之下,激素信号通过直接与WRKY TFs相互作用,在抑制倍半萜类生物合成中起着更决定性的调节作用。本研究为了解生菜生物活性化合物的调控和生物活性价值的遗传改良奠定了基础。
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引用次数: 0
Two gap-free genomes of Argentina provide insights into their genetic relationships. 阿根廷的两个无间隙基因组提供了对它们的遗传关系的见解。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-08-04 DOI: 10.1186/s43897-025-00160-4
Xien Wu, Qin Qiao, Qiang Cao, Zhongqiong Tian, La Qiong, Ticao Zhang
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引用次数: 0
A single nucleotide substitution in the SlMCT gene contributes to great morphological alternations in tomato. SlMCT基因的单核苷酸替换导致了番茄的形态变化。
IF 8.1 Q1 HORTICULTURE Pub Date : 2025-08-01 DOI: 10.1186/s43897-025-00159-x
Mengyi Yu, Yinge Xie, Zilin Qian, Yu Zhong, Huolin Shen, Wencai Yang

Terpenoids, a group of metabolites, are important to plant development and color formation, and serve as valuable nutrients for humans. The enzyme 4-diphosphocytidyl- 2 C-methyl-D-erythritol cytidyltransferase (MCT) plays a pivotal role in the methylerythritol phosphate (MEP) pathway for terpenoid biosynthesis. However, the potential lethality of MCT mutants has hindered further exploration into its functional role in terpenoid metabolite families in plants. Here, we characterized a rare MCT mutant yfm with dwarfism, chlorosis, small leaves, and yellow fruits in tomato. Map-based cloning and sequence analysis revealed that a single nucleotide substitution in the SlMCT gene, which resulted in a point mutation (Leu297Pro) in amino acid in the mutant. Over-expression and complementation of the wild-type SlMCTT in the yfm mutant restored the fruit color and the other defective phenotypes. This mutation altered the gene expressions and metabolic components in the MEP and other pathways. Consequently, the total contents of carotenoids, chlorophyll, IAA, GAs, and SA were decreased, while the contents of CK, JA, and ABA were increased. Eventually, these alterations led to changes in plant phenotypes and fruit color in yfm. These findings provide novel insights into understanding the roles of MCT on plant development and pigment biosynthesis.

萜类化合物是一组代谢产物,对植物的发育和颜色的形成至关重要,是人类宝贵的营养物质。4-二磷酸胞基- 2 c -甲基-d -赤藓糖醇胞基转移酶(MCT)在萜类生物合成的甲基赤藓糖醇磷酸(MEP)途径中起关键作用。然而,MCT突变体的潜在致命性阻碍了对其在植物萜类代谢产物家族中的功能作用的进一步探索。在这里,我们描述了一个罕见的MCT突变体yfm,它在番茄中具有侏儒症、黄化、小叶和黄色果实。基于图谱的克隆和序列分析表明,SlMCT基因中存在单核苷酸替换,导致突变体的氨基酸发生点突变(Leu297Pro)。野生型SlMCTT在yfm突变体中的过表达和互补恢复了果实颜色和其他缺陷表型。该突变改变了MEP和其他途径中的基因表达和代谢成分。类胡萝卜素、叶绿素、IAA、GAs、SA总含量降低,CK、JA、ABA含量升高。最终,这些改变导致了yfm中植物表型和果实颜色的变化。这些发现为理解MCT在植物发育和色素生物合成中的作用提供了新的见解。
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引用次数: 0
Apoplastic proteomic reveals Colletotrichum fructicola effector CfXyn11A recognized by tobacco and suppressed by pear in the apoplast. 外质体蛋白质组学揭示了烟草识别、梨抑制的炭疽菌外质体效应因子CfXyn11A。
IF 10.6 Q1 HORTICULTURE Pub Date : 2025-07-07 DOI: 10.1186/s43897-025-00161-3
Chenyang Han, Shutian Tao, Zhihua Xie, Fengquan Liu, Shaoling Zhang

Colletotrichum fructicola is a hemibiotrophic fungal plant pathogen that transitions from biotrophic growth on living host tissue to necrotrophic tissue destruction. During the hemibiotrophic phase, numerous proteins are secreted into the apoplast, mediating host‒pathogen interactions. In this study, we employed apoplastic proteomics and RNA-seq to analyse the proteins secreted during the interaction between C. fructicola and pear. A secreted xylanase, CfXyn11A, was identified as a dual-function effector. In the nonhost Nicotiana benthamiana, it triggered immune responses, including reactive oxygen species production and programmed cell death. However, CfXyn11A evades detection in the host pear, enabling its role in cell wall degradation and nutrient acquisition. Genetic and biochemical assays confirmed that the immune-triggering function of CfXyn11A relies on its apoplastic localization and is independent of enzymatic activity. Additionally, we identified an aspartic protease-like protein, PbXIP1, in the pear apoplast, which binds CfXyn11A to suppress its enzymatic activity and virulence. This study highlights the role of apoplastic proteomics in elucidating the molecular mechanisms underlying plant immunity and pathogen virulence and emphasizes the contrasting outcomes of CfXyn11A in different host contexts. The findings provide new insights into the interplay between extracellular effectors and plant defense proteins during fungal infection.

果糖炭疽菌是一种半生物营养型植物真菌病原体,它在寄主组织上由生物营养型生长过渡到坏死性组织破坏。在半生物营养阶段,许多蛋白质分泌到外质体中,介导宿主与病原体的相互作用。在本研究中,我们采用外质体蛋白质组学和RNA-seq分析了C. fructicola与梨相互作用过程中分泌的蛋白质。分泌的木聚糖酶CfXyn11A被鉴定为具有双重功能的效应物。在非宿主的benthamiana中,它引发了免疫反应,包括活性氧的产生和程序性细胞死亡。然而,CfXyn11A避开了宿主梨的检测,使其在细胞壁降解和营养获取中发挥作用。遗传和生化分析证实,CfXyn11A的免疫触发功能依赖于其胞外定位,不依赖于酶活性。此外,我们在梨外质体中发现了一种天冬氨酸蛋白酶样蛋白PbXIP1,该蛋白与CfXyn11A结合,抑制其酶活性和毒力。本研究强调了外质体蛋白质组学在阐明植物免疫和病原体毒力的分子机制中的作用,并强调了CfXyn11A在不同寄主环境下的对比结果。这些发现为真菌感染过程中细胞外效应物与植物防御蛋白之间的相互作用提供了新的见解。
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引用次数: 0
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Molecular Horticulture
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