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Small secreted peptides (SSPs) in tomato and their potential roles in drought stress response. 番茄中的小分泌肽及其在干旱胁迫反应中的潜在作用。
Q1 HORTICULTURE Pub Date : 2023-08-25 DOI: 10.1186/s43897-023-00063-2
Kexin Xu, Dongdong Tian, TingJin Wang, Aijun Zhang, Mohamed Abdou Youssef Elsadek, Weihong Liu, Liping Chen, Yongfeng Guo

Tomato (Solanum lycopersicum) is one of the most important vegetable crops in the world and abiotic stresses often cause serious problems in tomato production. It is thus important to identify new regulators in stress response and to devise new approaches to promote stress tolerance in tomato. Previous studies have shown that small secreted peptides (SSPs) are important signal molecules regulating plant growth and stress response by mediating intercellular communication. However, little is known about tomato SSPs, especially their roles in responding to abiotic stresses. Here we report the identification of 1,050 putative SSPs in the tomato genome, 557 of which were classified into 38 known SSP families based on their conserved domains. GO and transcriptome analyses revealed that a large proportion of SlSSPs might be involved in abiotic stress response. Further analysis indicated that stress response related cis-elements were present on the SlCEP promotors and a number of SlCEPs were significantly upregulated by drought treatments. Among the drought-inducible SlCEPs, SlCEP10 and SlCEP11b were selected for further analysis via exogenous application of synthetic peptides. The results showed that treatments with both SlCEP10 and SlCEP11b peptides enhanced tomato drought stress tolerance, indicating the potential roles of SlSSPs in abiotic stress response.

番茄是世界上最重要的蔬菜作物之一,非生物胁迫经常给番茄生产带来严重问题。因此,确定新的应激反应调节因子并设计新的方法来提高番茄的应激耐受性是很重要的。先前的研究表明,小分泌肽(SSP)是通过介导细胞间通讯调节植物生长和应激反应的重要信号分子。然而,人们对番茄SSP知之甚少,尤其是它们在应对非生物胁迫中的作用。在这里,我们报道了番茄基因组中1050个推定SSP的鉴定,其中557个根据其保守结构域分为38个已知SSP家族。GO和转录组分析表明,大部分SlSSP可能参与非生物胁迫反应。进一步的分析表明,与胁迫反应相关的顺式元件存在于SlCEP启动子上,并且干旱处理显著上调了许多SlCEP。在干旱诱导的SlCEPs中,选择SlCEP10和SlCEP11b通过外源应用合成肽进行进一步分析。结果表明,用SlCEP10和SlCEP11b肽处理提高了番茄的抗旱性,表明SlSSP在非生物胁迫反应中的潜在作用。
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引用次数: 0
Efficient and transgene-free genome editing in banana using a REG-2 promoter-driven gene-deletion system. 使用REG-2启动子驱动的基因缺失系统对香蕉进行高效且无转基因的基因组编辑。
Q1 HORTICULTURE Pub Date : 2023-08-23 DOI: 10.1186/s43897-023-00065-0
Chunhua Hu, Fan Liu, Ou Sheng, Qiaosong Yang, Tongxin Dou, Tao Dong, Chunyu Li, Huijun Gao, Weidi He, Siwen Liu, Guiming Deng, Ganjun Yi, Fangcheng Bi
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引用次数: 0
A LlMYB305-LlC3H18-LlWRKY33 module regulates thermotolerance in lily. LlMYB305-LlC3H18-LlWRKY33模块调节百合的耐热性。
Q1 HORTICULTURE Pub Date : 2023-08-17 DOI: 10.1186/s43897-023-00064-1
Ze Wu, Jiahui Liang, Ting Li, Dehua Zhang, Nianjun Teng

The CCCH proteins play important roles in plant growth and development, hormone response, pathogen defense and abiotic stress tolerance. However, the knowledge of their roles in thermotolerance are scarce. Here, we identified a heat-inducible CCCH gene LlC3H18 from lily. LlC3H18 was localized in the cytoplasm and nucleus under normal conditions, while it translocated in the cytoplasmic foci and co-located with the markers of two messenger ribonucleoprotein (mRNP) granules, processing bodies (PBs) and stress granules (SGs) under heat stress conditions, and it also exhibited RNA-binding ability. In addition, LlC3H18 exhibited transactivation activity in both yeast and plant cells. In lily and Arabidopsis, overexpression of LlC3H18 damaged their thermotolerances, and silencing of LlC3H18 in lily also impaired its thermotolerance. Similarly, Arabidopsis atc3h18 mutant also showed decreased thermotolerance. These results indicated that the appropriate expression of C3H18 was crucial for establishing thermotolerance. Further analysis found that LlC3H18 directly bound to the promoter of LlWRKY33 and activated its expression. Besides, it was found that LlMYB305 acted as an upstream factor of LlC3H18 and activated its expression. In conclusion, we demonstrated that there may be a LlMYB305-LlC3H18-LlWRKY33 regulatory module in lily that is involved in the establishment of thermotolerance and finely regulates heat stress response.

CCCH蛋白在植物生长发育、激素反应、病原体防御和非生物胁迫耐受中发挥着重要作用。然而,关于它们在耐热性中的作用的知识却很少。在这里,我们从百合中鉴定了一个热诱导CCCH基因LlC3H18。LlC3H18在正常条件下定位于细胞质和细胞核,而在热应激条件下,它在细胞质病灶中易位,并与两个信使核糖核蛋白(mRNP)颗粒、加工体(PBs)和应激颗粒(SGs)的标记物共定位,并且它还表现出RNA结合能力。此外,LlC3H18在酵母和植物细胞中都表现出反式激活活性。在百合和拟南芥中,LlC3H18的过表达损害了它们的耐热性,而在百合中LlC3H19的沉默也损害了它的耐热性。类似地,拟南芥atc3h18突变体也表现出耐热性降低。这些结果表明,C3H18的适当表达对于建立耐热性至关重要。进一步分析发现,LlC3H18直接与LlWRKY33的启动子结合并激活其表达。此外,发现LlMYB305作为LlC3H18的上游因子并激活其表达。总之,我们证明百合中可能存在一个LlMYB305-LlC3H18-LlWRKY33调节模块,该模块参与耐热性的建立并精细地调节热应激反应。
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引用次数: 0
Function and molecular mechanism analysis of CaLasSDE460 effector involved in the pathogenesis of "Candidatus Liberibacter asiaticus" in citrus. CaLasSDE460效应子在柑桔“亚洲念珠菌”发病机制中的作用及分子机制分析。
Q1 HORTICULTURE Pub Date : 2023-07-24 DOI: 10.1186/s43897-023-00062-3
Shuai Wang, Meixia Du, Liting Dong, Rongrong Qu, Danlu Ran, Juanjuan Ma, Xuefeng Wang, Lanzhen Xu, Weimin Li, Yongrui He, Xiuping Zou

Citrus Huanglongbing (HLB), caused by Candidatus Liberibacter asiaticus (CaLas), is the most serious disease worldwide. CaLasSDE460 was previously characterized as a potential virulence factor of CaLas. However, the function and mechanism of CaLasSDE460 involved in CaLas against citrus is still elusive. Here, we showed that transgenic expression of CaLasSDE460 in Wanjincheng oranges (C. sinensis Osbeck) contributed to the early growth of CaLas and the development of symptoms. When the temperature increased from 25 °C to 32 °C, CaLas growth and symptom development in transgenic plants were slower than those in WT controls. RNA-seq analysis of transgenic plants showed that CaLasSDE460 affected multiple biological processes. At 25 °C, transcription activities of the "Protein processing in endoplasmic reticulum" and "Cyanoamino acid metabolism" pathways increased while transcription activities of many pathways decreased at 32 °C. 124 and 53 genes, separately annotated to plant-pathogen interaction and MAPK signaling pathways, showed decreased expression at 32 °C, compared with these (38 for plant-pathogen interaction and 17 for MAPK signaling) at 25 °C. Several important genes (MAPKKK14, HSP70b, NCED3 and WRKY33), remarkably affected by CaLasSDE460, were identified. Totally, our data suggested that CaLasSDE460 participated in the pathogenesis of CaLas through interfering transcription activities of citrus defense response and this interfering was temperature-dependent.

柑桔黄龙病是由亚洲自由念珠菌(Candidatus Liberibacter asiaticus,CaLas)引起的世界范围内最严重的病害。CaLasSDE460先前被鉴定为CaLas的潜在毒力因子。然而,参与CaLas的CaLasSDE460对柑橘的作用和机制仍然难以捉摸。在这里,我们发现CaLasSDE460在万金城橙(C.sinensis Osbeck)中的转基因表达有助于CaLas的早期生长和症状的发展。当温度从25°C升高到32°C时,转基因植物的CaLas生长和症状发展比野生型对照慢。对转基因植物的RNA-seq分析表明,CaLasSDE460影响多种生物学过程。在25°C时,“内质网中的蛋白质加工”和“氰基氨基酸代谢”途径的转录活性增加,而在32°C时许多途径的转录活动降低。与25°C时相比,分别注释为植物-病原体相互作用和MAPK信号通路的124和53个基因(38个用于植物-病原体交互作用,17个用于MAPK信号传导)在32°C时表现出表达降低。鉴定了几个受CaLasSDE460显著影响的重要基因(MAPKKK14、HSP70b、NCED3和WRKY33)。总之,我们的数据表明,CaLasSDE460通过干扰柑橘防御反应的转录活性参与了CaLas的发病机制,这种干扰是温度依赖性的。
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引用次数: 0
Evolutionary assessment of SQUAMOSA PROMOTER BINDING PROTEIN-LIKE genes in citrus relatives with a specific focus on flowering. 柑橘亲缘关系中SQUAMOSA启动子结合蛋白样基因的进化评估,特别关注开花。
Q1 HORTICULTURE Pub Date : 2023-07-20 DOI: 10.1186/s43897-023-00061-4
Yawei Li, Shuting Wang, Prakash Babu Adhikari, Bing Liu, Shengjun Liu, Yue Huang, Gang Hu, Michitaka Notaguchi, Qiang Xu

Phase transition and floral induction in citrus requires several years of juvenility after germination. Such a long period of juvenility has been a major hindrance to its genetic improvement program. Studies have shown that miR156 along with its downstream genes SQUAMOSA PROMOTER BINDING PROTEINS (SBP) and SBP-LIKE (SPL) mediate the phase transition and floral induction process in plants. Our current study has systematically analyzed SPLs in 15 different citrus-related species, systematically annotated them based on their close homology to their respective Arabidopsis orthologs, and confirmed the functional attributes of the selected members in floral precocity. The majority of the species harbored 15 SPLs. Their cis-element assessment suggested the involvement of the SPLs in diverse developmental and physiological processes in response to different biotic and abiotic cues. Among all, SPL5, SPL9, and SPL11 stood out as consistently differentially expressed SPLs in the adult and young tissues of different citrus-related species. Independent overexpression of their F. hindsii orthologs (FhSPL5, FhSPL9, and FhSPL11) brought an enhanced expression of endogenous FLOWERING LOCUS T leading to the significantly precocious flowering in transgenic Arabidopsis lines. Future study of the genes in the citrus plant itself is expected to conclude the assessments made in the current study.

柑橘的相变和花诱导需要在发芽后几年的幼嫩期。如此长的幼年期一直是其基因改良计划的主要障碍。研究表明,miR156及其下游基因SQUAMOSA启动子结合蛋白(SBP)和SBP-LIKE(SPL)介导植物的相变和花诱导过程。我们目前的研究已经系统地分析了15个不同柑橘相关物种的SPL,并根据它们与各自拟南芥直向同源性的密切同源性对它们进行了系统的注释,并证实了所选成员在花早熟中的功能属性。大多数物种携带15个SPL。他们的顺式元素评估表明,SPL参与了不同的发育和生理过程,以响应不同的生物和非生物线索。其中,SPL5、SPL9和SPL11在不同柑橘相关物种的成年和幼龄组织中持续差异表达。它们的F.hindsii直向同源物(FhSPL5、FhSPL9和FhSPL11)的独立过表达导致内源开花位点T的表达增强,导致转基因拟南芥系中显著早熟开花。未来对柑橘植物本身基因的研究有望得出当前研究中的评估结论。
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引用次数: 0
Transcriptomes of developing fruit of cultivated and wild tomato species. 栽培和野生番茄品种发育中果实的转录组。
Q1 HORTICULTURE Pub Date : 2023-06-26 DOI: 10.1186/s43897-023-00060-5
Adi Doron-Faigenboim, Michal Moy-Komemi, Marina Petreikov, Yelena Eselson, Prashant Sonawane, Pablo Cardenas, Zhangjun Fei, Asaph Aharoni, Arthur A Schaffer
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引用次数: 0
Multilayered regulation of secondary metabolism in medicinal plants. 药用植物次生代谢的多层调控。
Q1 HORTICULTURE Pub Date : 2023-06-06 DOI: 10.1186/s43897-023-00059-y
Yan Zhao, Guanze Liu, Feng Yang, Yanli Liang, Qingqing Gao, Chunfan Xiang, Xia Li, Run Yang, Guanghui Zhang, Huifeng Jiang, Lei Yu, Shengchao Yang

Medicinal plants represent a huge reservoir of secondary metabolites (SMs), substances with significant pharmaceutical and industrial potential. However, obtaining secondary metabolites remains a challenge due to their low-yield accumulation in medicinal plants; moreover, these secondary metabolites are produced through tightly coordinated pathways involving many spatiotemporally and environmentally regulated steps. The first regulatory layer involves a complex network of transcription factors; a second, more recently discovered layer of complexity in the regulation of SMs is epigenetic modification, such as DNA methylation, histone modification and small RNA-based mechanisms, which can jointly or separately influence secondary metabolites by regulating gene expression. Here, we summarize the findings in the fields of genetic and epigenetic regulation with a special emphasis on SMs in medicinal plants, providing a new perspective on the multiple layers of regulation of gene expression.

药用植物代表了一个巨大的次生代谢产物库,这些物质具有重要的药用和工业潜力。然而,由于次生代谢产物在药用植物中的产量积累较低,因此获得次生代谢产物仍然是一个挑战;此外,这些次级代谢产物是通过紧密协调的途径产生的,涉及许多时空和环境调控的步骤。第一调控层涉及转录因子的复杂网络;最近发现的SM调节的第二个复杂层是表观遗传修饰,如DNA甲基化、组蛋白修饰和基于小RNA的机制,它们可以通过调节基因表达共同或单独影响次级代谢产物。在这里,我们总结了遗传和表观遗传学调控领域的研究结果,特别强调了药用植物中的SM,为基因表达的多层调控提供了新的视角。
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引用次数: 5
The terpene synthase (TPS) gene family in kiwifruit shows high functional redundancy and a subset of TPS likely fulfil overlapping functions in fruit flavour, floral bouquet and defence. 猕猴桃中的萜烯合成酶(TPS)基因家族表现出高度的功能冗余,TPS的一个子集可能在水果风味、花香和防御方面发挥重叠的功能。
IF 10.6 Q1 HORTICULTURE Pub Date : 2023-05-08 DOI: 10.1186/s43897-023-00057-0
Wu Wang, Mindy Y Wang, Yunliu Zeng, Xiuyin Chen, Xiaoyao Wang, Anne M Barrington, Jianmin Tao, Ross G Atkinson, Niels J Nieuwenhuizen

Volatile terpenes are important compounds that influence fruit flavour and aroma of kiwifruit. Terpenes in plants also impact on the floral bouquet and defence against pests and pathogens in leaves and fruit. To better understand the overlapping roles that terpenes may fulfil in plants, a systematic gene, chemical and biochemical analysis of terpenes and terpene synthases (TPS) was undertaken in Red5 kiwifruit (Actinidia spp.). Analysis of the Red5 genome shows it contains only 22 TPS gene models, of which fifteen encode full-length TPS. Thirteen TPS can account for the major terpene volatiles produced in different tissues of Red5 kiwifruit and in response to different stimuli. The small Red5 TPS family displays surprisingly high functional redundancy with five TPS producing linalool/nerolidol. Treatment of leaves and fruit with methyl jasmonate enhanced expression of a subset of defence-related TPS genes and stimulated the release of terpenes. Six TPS genes were induced upon herbivory of leaves by the economically important insect pest Ctenopseustis obliquana (brown-headed leaf roller) and emission, but not accumulation, of (E)- and (Z)-nerolidol was strongly linked to herbivory. Our results provide a framework to understand the overlapping biological and ecological roles of terpenes in Actinidia and other horticultural crops.

挥发性萜烯是影响猕猴桃果实风味和香气的重要化合物。植物中的萜烯也会影响花朵的芳香,以及对叶子和果实中害虫和病原体的防御。为了更好地理解萜烯在植物中可能发挥的重叠作用,对Red5猕猴桃(猕猴桃属)的萜烯和萜烯合成酶(TPS)进行了系统的基因、化学和生物化学分析。对Red5基因组的分析表明,它只包含22个TPS基因模型,其中15个编码全长TPS。13个TPS可以解释Red5猕猴桃不同组织中产生的主要萜烯挥发物以及对不同刺激的反应。小型Red5 TPS家族显示出令人惊讶的高功能冗余,有五个TPS生产芳樟醇/橙花内酯。用茉莉酸甲酯处理叶片和果实增强了防御相关TPS基因亚群的表达,并刺激了萜烯的释放。经济上重要的害虫Ctenopseustis oblitana(褐头卷叶虫)对叶片的草食性诱导了6个TPS基因,并且(E)-和(Z)-橙花内酯的释放而不是积累与草食性密切相关。我们的研究结果为理解萜烯在猕猴桃和其他园艺作物中重叠的生物和生态作用提供了一个框架。
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引用次数: 0
FERONIA and reactive oxygen species: regulators in the self-incompatibility response and in interspecific pollination. FERONIA和活性氧:自交不亲和反应和种间授粉的调节因子。
IF 10.6 Q1 HORTICULTURE Pub Date : 2023-04-28 DOI: 10.1186/s43897-023-00058-z
Zihan Song, Sheng Zhong, Li-Jia Qu
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引用次数: 0
Oxygenation alleviates waterlogging-caused damages to cherry rootstocks. 充氧可以缓解积水对樱桃砧木造成的损害。
Q1 HORTICULTURE Pub Date : 2023-04-17 DOI: 10.1186/s43897-023-00056-1
Yuxuan Wang, Yan Xu, Jieming Xu, Wanxia Sun, Zhengxin Lv, Muhammad Aamir Manzoor, Xunju Liu, Zhiyu Shen, Jiyuan Wang, Ruie Liu, Matthew D Whiting, Songtao Jiu, Caixi Zhang

Waterlogging has occurred more frequently in recent years due to climate change, so it is a huge threat to crop yield and quality. Sweet cherry, a fruit tree with a high economic value, is sensitive to waterlogging stress. One of the most effective methods for enhancing the waterlogging tolerance of sweet cherries is to select waterlogging-tolerant rootstocks. However, the waterlogging tolerance of different cherry rootstocks, and the underlying mechanism remains uncharacterized. Thus, we first evaluated the waterlogging resistance of five sweet cherry rootstocks planted in China. The data showed that 'Gisela 12' and 'Colt' were the most waterlogging-sensitive and -tolerant among the five tested varieties, respectively. Oxygenation effectively alleviated the adverse impacts of waterlogging stress on cherry rootstocks. Moreover, we found that the waterlogging group had lower relative water content, Fv/Fm value, net photosynthetic rate, and higher antioxidant enzyme activities, whereas the oxygenated group performed better in all these parameters. RNA-Seq analysis revealed that numerous DEGs were involved in energy production, antioxidant metabolism, hormone metabolism pathways, and stress-related transcription factors. These findings will help provide management strategies to enhance the waterlogging tolerance of cherry rootstocks and thereby achieve higher yield and better quality of cherries.

近年来,由于气候变化,水涝现象更加频繁,因此对作物产量和质量构成了巨大威胁。甜樱桃是一种经济价值较高的果树,对洪涝胁迫敏感。提高甜樱桃耐涝性最有效的方法之一是选择耐涝砧木。然而,不同樱桃砧木的耐涝性及其潜在机制尚不明确。因此,我们首次对我国种植的五种甜樱桃砧木的耐涝性进行了评价。结果表明,在5个试验品种中,“Gisela 12”和“Colt”分别是最敏感和最耐涝的品种。充氧能有效地减轻了淹水胁迫对樱桃砧木的不利影响。此外,我们发现内涝组的相对含水量、Fv/Fm值、净光合速率和抗氧化酶活性较低,而含氧组在所有这些参数上表现更好。RNA-Seq分析显示,许多DEG参与能量产生、抗氧化代谢、激素代谢途径和应激相关转录因子。这些发现将有助于提供提高樱桃砧木耐涝性的管理策略,从而实现更高的樱桃产量和更好的樱桃质量。
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引用次数: 1
期刊
Molecular Horticulture
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