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CsWRKY11 cooperates with CsNPR1 to regulate SA-triggered leaf de-greening and reactive oxygen species burst in cucumber. CsWRKY11 与 CsNPR1 合作调控 SA 触发的黄瓜叶片脱绿和活性氧猝灭。
Q1 HORTICULTURE Pub Date : 2024-05-22 DOI: 10.1186/s43897-024-00092-5
Dingyu Zhang, Ziwei Zhu, Bing Yang, Xiaofeng Li, Hongmei Zhang, Hongfang Zhu

Salicylic acid (SA) is a multi-functional phytohormone, regulating diverse processes of plant growth and development, especially triggering plant immune responses and initiating leaf senescence. However, the early SA signaling events remain elusive in most plant species apart from Arabidopsis, and even less is known about the multi-facet mechanism underlying SA-regulated processes. Here, we report the identification of a novel regulatory module in cucumber, CsNPR1-CsWRKY11, which mediates the regulation of SA-promoted leaf senescence and ROS burst. Our analyses demonstrate that under SA treatment, CsNPR1 recruits CsWRKY11 to bind to the promoter of CsWRKY11 to activate its expression, thus amplifying the primary SA signal. Then, CsWRKY11 cooperates with CsNPR1 to directly regulate the expression of both chlorophyll degradation and ROS biosynthesis related genes, thereby inducing leaf de-greening and ROS burst. Our study provides a solid line of evidence that CsNPR1 and CsWRKY11 constitute a key module in SA signaling pathway in cucumber, and gains an insight into the interconnected regulation of SA-triggered processes.

水杨酸(SA)是一种多功能植物激素,可调节植物生长发育的多种过程,尤其是触发植物免疫反应和启动叶片衰老。然而,除拟南芥外,大多数植物物种的早期 SA 信号转导事件仍然难以捉摸,对 SA 调控过程的多方面机制更是知之甚少。在这里,我们报告了在黄瓜中发现了一个新的调控模块 CsNPR1-CsWRKY11,它介导了对 SA 促进的叶片衰老和 ROS 暴发的调控。我们的分析表明,在 SA 处理下,CsNPR1 会招募 CsWRKY11 与 CsWRKY11 启动子结合,激活其表达,从而放大 SA 的主信号。然后,CsWRKY11与CsNPR1合作,直接调控叶绿素降解和ROS生物合成相关基因的表达,从而诱导叶片脱绿和ROS猝灭。我们的研究为 CsNPR1 和 CsWRKY11 构成黄瓜 SA 信号通路的一个关键模块提供了确凿的证据,并深入揭示了 SA 触发过程的相互调控关系。
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引用次数: 0
Predicted roles of long non-coding RNAs in abiotic stress tolerance responses of plants. 长非编码 RNA 在植物非生物胁迫耐受反应中的作用预测
Q1 HORTICULTURE Pub Date : 2024-05-15 DOI: 10.1186/s43897-024-00094-3
Iuh Imaduwage, Madhavi Hewadikaram

The plant genome exhibits a significant amount of transcriptional activity, with most of the resulting transcripts lacking protein-coding potential. Non-coding RNAs play a pivotal role in the development and regulatory processes in plants. Long non-coding RNAs (lncRNAs), which exceed 200 nucleotides, may play a significant role in enhancing plant resilience to various abiotic stresses, such as excessive heat, drought, cold, and salinity. In addition, the exogenous application of chemicals, such as abscisic acid and salicylic acid, can augment plant defense responses against abiotic stress. While how lncRNAs play a role in abiotic stress tolerance is relatively well-studied in model plants, this review provides a comprehensive overview of the current understanding of this function in horticultural crop plants. It also delves into the potential role of lncRNAs in chemical priming of plants in order to acquire abiotic stress tolerance, although many limitations exist in proving lncRNA functionality under such conditions.

植物基因组具有大量的转录活性,但由此产生的大多数转录本缺乏编码蛋白质的潜力。非编码 RNA 在植物的生长发育和调控过程中起着举足轻重的作用。超过 200 个核苷酸的长非编码 RNA(lncRNA)可能在增强植物对各种非生物胁迫(如过热、干旱、寒冷和盐度)的抗逆性方面发挥重要作用。此外,外源施用脱落酸和水杨酸等化学物质也能增强植物对非生物胁迫的防御反应。lncRNA如何在非生物胁迫耐受性中发挥作用在模式植物中的研究相对较多,本综述全面概述了目前对园艺作物中lncRNA功能的认识。它还深入探讨了 lncRNA 在植物获得非生物胁迫耐受性的化学引物中的潜在作用,尽管在证明 lncRNA 在这种条件下的功能方面存在许多限制。
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引用次数: 0
Recent advances of kwifruit genome and genetic transformation. 猕猴桃基因组和遗传转化的最新进展。
Q1 HORTICULTURE Pub Date : 2024-05-10 DOI: 10.1186/s43897-024-00096-1
Yingzhen Wang, Yongsheng Liu
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引用次数: 0
Unveiling rootstock-induced dwarfing from comparative genomic analysis. 通过比较基因组分析揭示根茎诱导的矮化现象。
Q1 HORTICULTURE Pub Date : 2024-05-06 DOI: 10.1186/s43897-024-00097-0
Tingting Zhao, Quan Sun, Da-Gang Hu
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引用次数: 0
MetaDb: a database for metabolites and their regulation in plants with an emphasis on medicinal plants. MetaDb:以药用植物为重点的植物代谢物及其调控数据库。
Q1 HORTICULTURE Pub Date : 2024-04-29 DOI: 10.1186/s43897-024-00095-2
Qingqing Gao, Jiajin Zhang, Juntao Cao, Chunfan Xiang, Chengxiao Yuan, Xia Li, Juan Wang, Pinhan Zhou, Lesong Li, Jia Liu, Hongchun Xie, Ruolan Li, Guilin Huang, Chaohui Li, Guanghui Zhang, Shengchao Yang, Yan Zhao
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引用次数: 0
Cell wall remodeling promotes callus formation in poplar. 细胞壁重塑促进杨树茧的形成
Q1 HORTICULTURE Pub Date : 2024-04-29 DOI: 10.1186/s43897-024-00093-4
Geng Zhang, Peipei Liu, Guifang Zhang, Xiaomin Yao, Xinwei Wang, Yueqian Zhang, Jinxing Lin, Yaning Cui, Xiaojuan Li
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引用次数: 0
Haplotype-resolved genome assembly of the diploid Rosa chinensis provides insight into the mechanisms underlying key ornamental traits. 二倍体蔷薇的单倍型解析基因组组装深入揭示了关键观赏性状的内在机制。
Q1 HORTICULTURE Pub Date : 2024-04-16 DOI: 10.1186/s43897-024-00088-1
Xiaoni Zhang, Quanshu Wu, Lan Lan, Dan Peng, Huilin Guan, Kaiqing Luo, Manzhu Bao, Mohammed Bendahmane, Xiaopeng Fu, Zhiqiang Wu

Roses are consistently ranked at the forefront in cut flower production. Increasing demands of market and changing climate conditions have resulted in the need to further improve the diversity and quality of traits. However, frequent hybridization leads to highly heterozygous nature, including the allelic variants. Therefore, the absence of comprehensive genomic information leads to them making it challenging to molecular breeding. Here, two haplotype-resolved chromosome genomes for Rosa chinensis 'Chilong Hanzhu' (2n = 14) which is high heterozygous diploid old Chinese rose are generated. An amount of genetic variation (1,605,616 SNPs, 209,575 indels) is identified. 13,971 allelic genes show differential expression patterns between two haplotypes. Importantly, these differences hold valuable insights into regulatory mechanisms of traits. RcMYB114b can influence cyanidin-3-glucoside accumulation and the allelic variation in its promoter leads to differences in promoter activity, which as a factor control petal color. Moreover, gene family expansion may contribute to the abundance of terpenes in floral scents. Additionally, RcANT1, RcDA1, RcAG1 and RcSVP1 genes are involved in regulation of petal number and size under heat stress treatment. This study provides a foundation for molecular breeding to improve important characteristics of roses.

玫瑰花在切花生产中一直名列前茅。日益增长的市场需求和不断变化的气候条件使得人们需要进一步提高品种的多样性和质量。然而,频繁的杂交导致了高度杂合性,包括等位基因变异。因此,缺乏全面的基因组信息使分子育种面临挑战。在此,我们生成了高杂合子二倍体中国老蔷薇'赤龙含珠'(2n = 14)的两个单倍型染色体基因组。确定了大量的遗传变异(1,605,616 个 SNPs,209,575 个 indels)。13,971 个等位基因在两个单倍型之间表现出不同的表达模式。重要的是,这些差异为了解性状的调控机制提供了宝贵的信息。RcMYB114b 可影响花青素-3-葡萄糖苷的积累,其启动子的等位基因变异导致启动子活性的差异,而启动子活性是控制花瓣颜色的一个因素。此外,基因家族的扩展可能有助于花香中萜烯类物质的丰富。此外,RcANT1、RcDA1、RcAG1 和 RcSVP1 基因参与热胁迫处理下花瓣数量和大小的调控。这项研究为分子育种改善玫瑰的重要特性奠定了基础。
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引用次数: 0
DNA methylation-mediated ROS production contributes to seed abortion in litchi. DNA 甲基化介导的 ROS 生成导致荔枝种子流产。
Q1 HORTICULTURE Pub Date : 2024-04-02 DOI: 10.1186/s43897-024-00089-0
Hanhan Xie, Yedan Zheng, Mengyue Xue, Yulian Huang, Dawei Qian, Minglei Zhao, Jianguo Li

Although there is increasing evidence suggesting that DNA methylation regulates seed development, the underlying mechanisms remain poorly understood. Therefore, we aimed to shed light on this by conducting whole-genome bisulfite sequencing using seeds from the large-seeded cultivar 'HZ' and the abortive-seeded cultivar 'NMC'. Our analysis revealed that the 'HZ' seeds exhibited a hypermethylation level compared to the 'NMC' seeds. Furthermore, we found that the genes associated with differentially methylated regions (DMRs) and differentially expressed genes (DEGs) were mainly enriched in the reactive oxygen species (ROS) metabolic pathway. To investigate this further, we conducted nitroblue tetrazolium (NBT) and 2,7-Dichlorodihydrofluorescein (DCF) staining, which demonstrated a significantly higher amount of ROS in the 'NMC' seeds compared to the 'HZ' seeds. Moreover, we identified that the gene LcGPX6, involved in ROS scavenging, exhibited hypermethylation levels and parallelly lower expression levels in 'NMC' seeds compared to 'HZ' seeds. Interestingly, the ectopic expression of LcGPX6 in Arabidopsis enhanced ROS scavenging and resulted in lower seed production. Together, we suggest that DNA methylation-mediated ROS production plays a significant role in seed development in litchi, during which hypermethylation levels of LcGPX6 might repress its expression, resulting in the accumulation of excessive ROS and ultimately leading to seed abortion.

尽管越来越多的证据表明 DNA 甲基化调控着种子的发育,但人们对其潜在机制仍然知之甚少。因此,我们利用大粒种子栽培品种 "HZ "和败育种子栽培品种 "NMC "的种子进行了全基因组亚硫酸氢盐测序,旨在揭示这一问题。我们的分析表明,与 "NMC "种子相比,"HZ "种子表现出高甲基化水平。此外,我们发现与差异甲基化区域(DMRs)和差异表达基因(DEGs)相关的基因主要富集在活性氧(ROS)代谢途径中。为了进一步研究这一点,我们进行了硝基蓝四氮唑(NBT)和 2,7-二氯二氢荧光素(DCF)染色,结果表明与 "HZ "种子相比,"NMC "种子中的 ROS 含量明显更高。此外,我们还发现,与 "HZ "种子相比,参与清除 ROS 的基因 LcGPX6 在 "NMC "种子中表现出高甲基化水平,同时表达水平也较低。有趣的是,LcGPX6 在拟南芥中的异位表达增强了 ROS 清除能力,导致种子产量降低。综上所述,我们认为 DNA 甲基化介导的 ROS 产生在荔枝种子的发育过程中起着重要作用,在这一过程中,LcGPX6 的高甲基化水平可能会抑制其表达,导致过量 ROS 的积累,最终导致种子流产。
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引用次数: 0
Cytokinin facilitates the patterning of the adventitious root apical meristem from leaf cuttings. 细胞分裂素能促进叶插不定根顶端分生组织的形态形成。
Q1 HORTICULTURE Pub Date : 2024-03-26 DOI: 10.1186/s43897-024-00091-6
Ning Zhai, Beibei Sun, Shasha Wu, Feng Zhou, Yuling Jiao, Lin Xu
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引用次数: 0
TrichomeLess Regulator 3 is required for trichome initial and cuticle biosynthesis in Artemisia annua. 黄花蒿的毛状体初始化和角质层生物合成需要无毛状体调节器 3。
Q1 HORTICULTURE Pub Date : 2024-03-19 DOI: 10.1186/s43897-024-00085-4
Boran Dong, Zihan Xu, Xingxing Wang, JinXing Li, Ying Xiao, Doudou Huang, Zongyou Lv, Wansheng Chen

Artemisinin is primarily synthesized and stored in the subepidermal space of the glandular trichomes of Artemisia annua. The augmentation of trichome density has been demonstrated to enhance artemisinin yield. However, existing literature lacks insights into the correlation between the stratum corneum and trichomes. This study aims to unravel the involvement of TrichomeLess Regulator 3 (TLR3), which encodes the transcription factor, in artemisinin biosynthesis and its potential association with the stratum corneum. TLR3 was identified as a candidate gene through transcriptome analysis. The role of TLR3 in trichome development and morphology was investigated using yeast two-hybrid, pull-down analysis, and RNA electrophoresis mobility assay. Our research revealed that TLR3 negatively regulates trichome development. It modulates the morphology of Arabidopsis thaliana trichomes by inhibiting branching and inducing the formation of abnormal trichomes in Artemisia annua. Overexpression of the TLR3 gene disrupts the arrangement of the stratum corneum and reduces artemisinin content. Simultaneously, TLR3 possesses the capacity to regulate stratum corneum development and trichome follicle morphology by interacting with TRICHOME AND ARTEMISININ REGULATOR 1, and CycTL. Consequently, our findings underscore the pivotal role of TLR3 in the development of glandular trichomes and stratum corneum biosynthesis, thereby influencing the morphology of Artemisia annua trichomes.

青蒿素主要在黄花蒿腺毛的表皮下空间合成和储存。事实证明,增加毛状体密度可提高青蒿素产量。然而,现有文献缺乏对角质层与毛状体之间相关性的深入研究。本研究旨在揭示无毛状体调节器 3(TLR3)(编码转录因子)参与青蒿素生物合成的情况及其与角质层的潜在关联。通过转录组分析,TLR3 被确定为候选基因。我们使用酵母双杂交、拉低分析和 RNA 电泳迁移率测定法研究了 TLR3 在毛状体发育和形态中的作用。我们的研究发现,TLR3 负向调控毛状体的发育。它通过抑制拟南芥毛状体的分枝和诱导黄花蒿中异常毛状体的形成来调节拟南芥毛状体的形态。过量表达 TLR3 基因会破坏角质层的排列并降低青蒿素含量。同时,TLR3 还能通过与毛囊和青蒿素调节因子 1 及 CycTL 相互作用,调节角质层的发育和毛囊形态。因此,我们的发现强调了 TLR3 在腺毛状体的发育和角质层生物合成中的关键作用,从而影响了黄花蒿毛状体的形态。
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Molecular Horticulture
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