首页 > 最新文献

2009 International Symposium on Micro-NanoMechatronics and Human Science最新文献

英文 中文
Human's weight perception and load force characteristics in lifting objects with a power assist robot 助力机器人吊运物体时人的重量感知和载荷力特性
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5351850
S. Rahman, R. Ikeura, M. Nobe, H. Sawai
This paper deals with the design of a 1DOF power assist robot for lifting objects. Human's vertical lifting force, comprises of inertial force and gravitational force, was considered as the desired dynamics of the robot system. We hypothesized that human's perception of object weight due to inertial force might be different from the perceived weight due to gravitational force for lifting object with the power assist robot system. We then simulated the system using MATLAB/SIMULINK and lifted different sizes of objects with the system. We analyzed human's perceived weights as well as load force characteristics for lifting objects with the system. The analyses show that human's perception of object weight is related to load force rates instead of load force magnitudes. The analyses clarify that the magnitude of the peak load force is to be optimized in order to optimize the motion of the power assist robot. On the other hand, load force rate is to be optimized in order to optimize the feeling of heaviness of object manipulated with the power assist robot. The results also introduce the technique of simultaneous optimization of motion and perceived heaviness. Finally, we proposed using the findings to design human-friendly power assist robots for carrying heavy objects in various industries.
本文研究了一种一自由度助力起重机器人的设计。人的垂直升力包括惯性力和重力,被认为是机器人系统的期望动力学。我们假设,在动力辅助机器人系统中,由于惯性力,人类对物体重量的感知可能与重力对物体重量的感知不同。然后利用MATLAB/SIMULINK对该系统进行仿真,并利用该系统对不同尺寸的物体进行提升。利用该系统分析了人对重物的感知重量以及重物的受力特性。分析表明,人对物体重量的感知与载荷速率有关,而与载荷大小无关。分析表明,为了优化助力机器人的运动,需要对峰值负载力的大小进行优化。另一方面,为了优化助力机器人操纵物体的重感,需要对负载力率进行优化。结果还介绍了运动和感知重量同时优化的技术。最后,我们建议利用研究结果设计人性化的动力辅助机器人,用于各种行业的重物搬运。
{"title":"Human's weight perception and load force characteristics in lifting objects with a power assist robot","authors":"S. Rahman, R. Ikeura, M. Nobe, H. Sawai","doi":"10.1109/MHS.2009.5351850","DOIUrl":"https://doi.org/10.1109/MHS.2009.5351850","url":null,"abstract":"This paper deals with the design of a 1DOF power assist robot for lifting objects. Human's vertical lifting force, comprises of inertial force and gravitational force, was considered as the desired dynamics of the robot system. We hypothesized that human's perception of object weight due to inertial force might be different from the perceived weight due to gravitational force for lifting object with the power assist robot system. We then simulated the system using MATLAB/SIMULINK and lifted different sizes of objects with the system. We analyzed human's perceived weights as well as load force characteristics for lifting objects with the system. The analyses show that human's perception of object weight is related to load force rates instead of load force magnitudes. The analyses clarify that the magnitude of the peak load force is to be optimized in order to optimize the motion of the power assist robot. On the other hand, load force rate is to be optimized in order to optimize the feeling of heaviness of object manipulated with the power assist robot. The results also introduce the technique of simultaneous optimization of motion and perceived heaviness. Finally, we proposed using the findings to design human-friendly power assist robots for carrying heavy objects in various industries.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"54 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134017636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Specific formation of trypsin resistant micelle structure on a hydrophobic peptide observed with Triton X−100 but not with ocytlglucoside Triton X−100在疏水肽上观察到胰蛋白酶抗性胶束结构的特异性形成,而细胞糖苷则没有
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5351863
Chie Katsuda, K. Niiyama, Eriko Obana, Takenori Yamamoto, T. Matsuo, K. Ohkura, M. Kataoka, Y. Shinohara
Interaction manners of the coat peptide of Pf3 phage, Pf3 peptide, with lipid bilayer have been extensively studied. We designed a derivative of Pf3 peptide, referred to as DDRK peptide, and this peptide was subjected to trypsin digestion to understand its physicochemical properties. In the presence of Triton X−100 used for solubilization of DDRK peptide, trypsin digestion of DDRK peptide caused specific cleavage at its N-terminal Lysine residue. N-terminal region of the DDRK peptide is relatively hydrophilic, but its remaining region is hydrophobic. Thus, hydrophobic region of DDRK peptide is expected to be coated by Triton micelle, and formation of micelle structure of Triton seemed to cause selective cleavage of the DDRK peptide at its hydrophilic N-terminal Lys residue by trypsin. However, such protective effect on the DDRK peptide against trypsin digestion was not observed with octylglucoside. The observed results are important for understanding the interaction manners of detergents with hydrophobic peptides.
Pf3噬菌体外壳肽Pf3肽与脂质双分子层的相互作用方式已被广泛研究。我们设计了Pf3肽的衍生物,称为DDRK肽,并对该肽进行胰蛋白酶消化以了解其物理化学性质。在Triton X−100存在的情况下,用于溶解DDRK肽,胰蛋白酶消化DDRK肽导致其n端赖氨酸残基特异性裂解。DDRK肽的n端区域是相对亲水的,但其剩余区域是疏水的。因此,DDRK肽的疏水区域可能被Triton胶束包裹,Triton胶束结构的形成可能导致DDRK肽亲水性n端Lys残基被胰蛋白酶选择性切割。然而,辛基葡萄糖苷对DDRK肽抗胰蛋白酶消化的保护作用没有观察到。研究结果对了解洗涤剂与疏水肽的相互作用方式具有重要意义。
{"title":"Specific formation of trypsin resistant micelle structure on a hydrophobic peptide observed with Triton X−100 but not with ocytlglucoside","authors":"Chie Katsuda, K. Niiyama, Eriko Obana, Takenori Yamamoto, T. Matsuo, K. Ohkura, M. Kataoka, Y. Shinohara","doi":"10.1109/MHS.2009.5351863","DOIUrl":"https://doi.org/10.1109/MHS.2009.5351863","url":null,"abstract":"Interaction manners of the coat peptide of Pf3 phage, Pf3 peptide, with lipid bilayer have been extensively studied. We designed a derivative of Pf3 peptide, referred to as DDRK peptide, and this peptide was subjected to trypsin digestion to understand its physicochemical properties. In the presence of Triton X−100 used for solubilization of DDRK peptide, trypsin digestion of DDRK peptide caused specific cleavage at its N-terminal Lysine residue. N-terminal region of the DDRK peptide is relatively hydrophilic, but its remaining region is hydrophobic. Thus, hydrophobic region of DDRK peptide is expected to be coated by Triton micelle, and formation of micelle structure of Triton seemed to cause selective cleavage of the DDRK peptide at its hydrophilic N-terminal Lys residue by trypsin. However, such protective effect on the DDRK peptide against trypsin digestion was not observed with octylglucoside. The observed results are important for understanding the interaction manners of detergents with hydrophobic peptides.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"737 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116110746","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel fluorescent probe for measurement of extracellular matrix degradation 用于测量细胞外基质降解的新型荧光探针
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5351906
T. Murai, H. Kawashima
The invasive properties of cancer cells are affected by cell adhesion to the surrounding extracellular matrix. We previously reported that degradation of the major extracellular matrix component hyaluronan upregulates cancer cell migration. Although hyaluronan degradation to smaller fragments is a key reaction in regulating cancer progression, simple methods for continuously detecting hyaluronan-degrading activity have not been established. Here, we show that fluorescently-labeled hyaluronan serves as a substrate for continuous measurement of hyaluronan-degrading activity. The developed assay method is useful for investigation of the function of hyaluronan in cancer progression.
癌细胞的侵袭特性受细胞粘附周围细胞外基质的影响。我们以前报道过主要的细胞外基质成分透明质酸的降解会上调癌细胞的迁移。虽然透明质酸降解为更小的片段是调节癌症进展的关键反应,但持续检测透明质酸降解活性的简单方法尚未建立。在这里,我们展示了荧光标记的透明质酸可以作为连续测量透明质酸降解活性的底物。该方法可用于研究透明质酸在肿瘤进展中的作用。
{"title":"Novel fluorescent probe for measurement of extracellular matrix degradation","authors":"T. Murai, H. Kawashima","doi":"10.1109/MHS.2009.5351906","DOIUrl":"https://doi.org/10.1109/MHS.2009.5351906","url":null,"abstract":"The invasive properties of cancer cells are affected by cell adhesion to the surrounding extracellular matrix. We previously reported that degradation of the major extracellular matrix component hyaluronan upregulates cancer cell migration. Although hyaluronan degradation to smaller fragments is a key reaction in regulating cancer progression, simple methods for continuously detecting hyaluronan-degrading activity have not been established. Here, we show that fluorescently-labeled hyaluronan serves as a substrate for continuous measurement of hyaluronan-degrading activity. The developed assay method is useful for investigation of the function of hyaluronan in cancer progression.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"22 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121076783","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hybrid vision-force guided fault tolerant robotic assembly for electric connectors 混合视觉力引导的电连接器容错机器人装配
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5352078
P. Di, Jian Huang, Fei Chen, H. Sasaki, T. Fukuda
To Detect and recover the errors occurred in the task of mating connectors is vital in robotic wiring harness systems. In our previous work, a set-membership approach for static piecewise affine (PWA) system was proposed. Although using the static force model, errors can be detected effectively during mating connectors, there are still some mistaken detections and unrecognized faults, due to the insufficient sensor information and limitation of model. Before the mating task, there are various kinds of grasping errors. Only using force sensor is unable to detect the grasping errors. In this study, a new hybrid vision-force guided fault tolerant approach is proposed to improve the rate of error detection. More features from the vision system are chosen as the parameters of the fault tolerant system. Multiple sensors including a force sensor, encoders and an industrial vision system are assumed to acquire the necessary information of the method. The effectiveness of these methods is finally confirmed through experiments.
在机器人线束系统中,检测和恢复连接器配合任务中发生的错误是至关重要的。在我们之前的工作中,提出了静态分段仿射系统的集隶属度方法。虽然采用静力模型可以有效地检测连接器配合过程中的误差,但由于传感器信息的不足和模型的限制,仍然存在一些错误检测和无法识别的故障。在配对任务前,存在着各种抓取误差。仅使用力传感器是无法检测抓取误差的。本文提出了一种新的混合视觉力引导容错方法,以提高错误率。从视觉系统中选取更多的特征作为容错系统的参数。假定包括力传感器、编码器和工业视觉系统在内的多个传感器来获取该方法的必要信息。最后通过实验验证了这些方法的有效性。
{"title":"Hybrid vision-force guided fault tolerant robotic assembly for electric connectors","authors":"P. Di, Jian Huang, Fei Chen, H. Sasaki, T. Fukuda","doi":"10.1109/MHS.2009.5352078","DOIUrl":"https://doi.org/10.1109/MHS.2009.5352078","url":null,"abstract":"To Detect and recover the errors occurred in the task of mating connectors is vital in robotic wiring harness systems. In our previous work, a set-membership approach for static piecewise affine (PWA) system was proposed. Although using the static force model, errors can be detected effectively during mating connectors, there are still some mistaken detections and unrecognized faults, due to the insufficient sensor information and limitation of model. Before the mating task, there are various kinds of grasping errors. Only using force sensor is unable to detect the grasping errors. In this study, a new hybrid vision-force guided fault tolerant approach is proposed to improve the rate of error detection. More features from the vision system are chosen as the parameters of the fault tolerant system. Multiple sensors including a force sensor, encoders and an industrial vision system are assumed to acquire the necessary information of the method. The effectiveness of these methods is finally confirmed through experiments.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123855290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Functional analysis of a chromosomal passenger protein, Borealin, by multiphoton excitation-evoked chromophore-assisted laser inactivation 染色体客运蛋白Borealin的多光子激发诱发的发色团辅助激光失活功能分析
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5352016
Y. Harada, P. Dai, T. Takamatsu
Borealin, one of the chromosomal passenger proteins, is reported to play important roles in the mitotic process. To analyze precise functions of Borealin in the mitotic phase, we applied the method of multiphoton excitation-evoked chromophore-assisted laser inactivation. Although further studies are needed, our results suggest that Borealin is required for mitosis, as previously reported. These results provide insights into understanding the functions of chromosomal passenger proteins during mitosis.
Borealin是染色体客运蛋白之一,据报道在有丝分裂过程中起重要作用。为了分析Borealin在有丝分裂期的精确功能,我们采用了多光子激发诱发发色团辅助激光灭活的方法。尽管需要进一步的研究,我们的结果表明Borealin是有丝分裂所必需的,正如之前报道的那样。这些结果为理解有丝分裂过程中染色体乘客蛋白的功能提供了见解。
{"title":"Functional analysis of a chromosomal passenger protein, Borealin, by multiphoton excitation-evoked chromophore-assisted laser inactivation","authors":"Y. Harada, P. Dai, T. Takamatsu","doi":"10.1109/MHS.2009.5352016","DOIUrl":"https://doi.org/10.1109/MHS.2009.5352016","url":null,"abstract":"Borealin, one of the chromosomal passenger proteins, is reported to play important roles in the mitotic process. To analyze precise functions of Borealin in the mitotic phase, we applied the method of multiphoton excitation-evoked chromophore-assisted laser inactivation. Although further studies are needed, our results suggest that Borealin is required for mitosis, as previously reported. These results provide insights into understanding the functions of chromosomal passenger proteins during mitosis.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131122456","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Human blood pressure simulation for photoelastic stress analysis in models of vasculature 用于血管系统模型光弹性应力分析的人体血压模拟
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5351809
C. Tercero, S. Ikeda, M. Matsushima, T. Fukuda, Erick Tijerino, M. Negoro, I. Takahashi
The development of a numerical criterion to evaluate the stress on models of vasculature has applications in evaluation of human skills, robots and medical tools. This criterion will enable better medical training for endovascular surgery and the development of better medical techniques and tools. We propose to use the stress produced by human blood pressure simulation in the wall of the model of vasculature as this criterion; and to measure the principal component of stress magnitude using photoelastic effect. For that we simulated human blood pressure with a 5.6% of average error, we developed a shielded urethane model of vasculature enabling water circulation and avoiding plastic deformation with pressures below 182 mmHg. We developed software to calculate the stress of the model wall. Stress produced by human blood pressure simulation and a guide wire were compared numerically in four ranges.
开发一种数值准则来评估对血管系统模型的压力,在评估人类技能、机器人和医疗工具方面具有应用价值。这一标准将使更好的血管内手术医疗培训和更好的医疗技术和工具的发展。我们建议使用人体血压模拟在血管壁模型中产生的应力作为这一标准;并利用光弹性效应测量了应力大小的主成分。为此,我们以平均误差的5.6%模拟了人体血压,我们开发了一个屏蔽的聚氨酯血管模型,使水循环和避免压力低于182 mmHg的塑性变形。我们开发了计算模型墙应力的软件。对人体血压模拟和导丝产生的应力在四个范围内进行了数值比较。
{"title":"Human blood pressure simulation for photoelastic stress analysis in models of vasculature","authors":"C. Tercero, S. Ikeda, M. Matsushima, T. Fukuda, Erick Tijerino, M. Negoro, I. Takahashi","doi":"10.1109/MHS.2009.5351809","DOIUrl":"https://doi.org/10.1109/MHS.2009.5351809","url":null,"abstract":"The development of a numerical criterion to evaluate the stress on models of vasculature has applications in evaluation of human skills, robots and medical tools. This criterion will enable better medical training for endovascular surgery and the development of better medical techniques and tools. We propose to use the stress produced by human blood pressure simulation in the wall of the model of vasculature as this criterion; and to measure the principal component of stress magnitude using photoelastic effect. For that we simulated human blood pressure with a 5.6% of average error, we developed a shielded urethane model of vasculature enabling water circulation and avoiding plastic deformation with pressures below 182 mmHg. We developed software to calculate the stress of the model wall. Stress produced by human blood pressure simulation and a guide wire were compared numerically in four ranges.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131381819","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fabrication of self organized structure by controlling growth direction of plant cells 通过控制植物细胞生长方向制备自组织结构
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5351987
Kenta Yamamoto, K. Morishima
In this paper, new fabrication methods using plant cell was proposed. First, to prevent disappearing of culture medium, we fabricated syringe injection type culture mold. Using this mold, we will fabricate any figure structure. Then, to improve fabrication process effectively, the mold which cultures plant cells was optimized. First, we investigated the relationship between growth speed and membrane thickness of the mold. And it was figured out that PDMS mold was the most suitable material to culture plant cells. We also figured out Young's modules of plant cell structure.
本文提出了利用植物细胞制备的新方法。首先,为了防止培养基消失,我们制作了注射器注射式培养模具。使用这个模具,我们将制造任何图形结构。然后,为了有效地改进制作工艺,对培养植物细胞的模具进行了优化。首先,我们研究了生长速度与模具膜厚度之间的关系。结果表明,PDMS霉菌是培养植物细胞最合适的材料。我们还计算出了杨的植物细胞结构模块。
{"title":"Fabrication of self organized structure by controlling growth direction of plant cells","authors":"Kenta Yamamoto, K. Morishima","doi":"10.1109/MHS.2009.5351987","DOIUrl":"https://doi.org/10.1109/MHS.2009.5351987","url":null,"abstract":"In this paper, new fabrication methods using plant cell was proposed. First, to prevent disappearing of culture medium, we fabricated syringe injection type culture mold. Using this mold, we will fabricate any figure structure. Then, to improve fabrication process effectively, the mold which cultures plant cells was optimized. First, we investigated the relationship between growth speed and membrane thickness of the mold. And it was figured out that PDMS mold was the most suitable material to culture plant cells. We also figured out Young's modules of plant cell structure.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122445292","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enzymatic and crystallographic characterization of archaeal tRNA splicing endonuclease 古细菌tRNA剪接内切酶的酶学和晶体学表征
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5352027
Tsubasa Kitajima, A. Hirata, Chikako Iwashita, S. Yokobori, H. Hori
RNA splicing endonuclease, which is conserved in Eukarya and Archaea, removes introns from eukaryotic nuclear tRNA and archaeal all RNA species. There are three types of subunit composition in archaeal RNA splicing endonucleases, namely α2 (homodimer in some Euryarchaea), α4 (homotetramer in other Euryarchaea) and (αβ)2 (heterotetramer in the Crenarchaea) types. In Crenarchaea, introns in precursor tRNA (pre-tRNA) molecules are found not only in anticodon arm but also in several other regions in tRNA such as D- and T-loops, variable region, and aminoacyl stem. These introns have a consensus bulge-helix-bulge motif. Crenarchaeal RNA splicing endonuclease can remove introns in such non-canonical sites. However, the broad cleavage site-specificity of the enzyme remains exclusive. Here, we report the cleavage activity of recombinant RNA splicing endonuclease from hyperthermophilic crenarcheon Aeropyrum pernix (APE) by using the pre-tRNAThr (UGU) and pre-tRNAThr (CGU), in which introns are located in anticodon and D-loops, respectively. Furthermore we report that APE RNA splicing enzyme crystallizes in space group P3(1) with two or three heterotetramers in an asymmetric unit. An X-ray diffraction data set has been collected to 2.8 Å resolution. Structural determination is now underway.
RNA剪接内切酶在真核生物和古细菌中是保守的,它能从真核生物的核tRNA和古细菌的所有RNA物种中去除内含子。古细菌RNA剪接内切酶的亚基组成有三种类型,即α2(某些Euryarchaea属同二聚体)、α4(其他Euryarchaea属同四聚体)和(αβ)2 (Crenarchaea属异四聚体)。在Crenarchaea中,tRNA前体(pre-tRNA)分子中的内含子不仅存在于反密码子臂中,还存在于tRNA的其他几个区域,如D-环和t -环、可变区和氨基基茎中。这些内含子具有一致的凸起-螺旋-凸起基序。古细菌RNA剪接内切酶可以去除这些非规范位点上的内含子。然而,该酶的广泛裂解位点特异性仍然是排他性的。本研究利用内含子分别位于反密码子和d环上的前trnathr (UGU)和前trnathr (CGU),报道了来自超嗜热性Aeropyrum pernix (APE)的重组RNA剪接内切酶的裂解活性。此外,我们报道了APE RNA剪接酶在空间群P3(1)中结晶,在不对称单元中有两个或三个异源四聚体。收集了2.8 Å分辨率的x射线衍射数据集。结构测定正在进行中。
{"title":"Enzymatic and crystallographic characterization of archaeal tRNA splicing endonuclease","authors":"Tsubasa Kitajima, A. Hirata, Chikako Iwashita, S. Yokobori, H. Hori","doi":"10.1109/MHS.2009.5352027","DOIUrl":"https://doi.org/10.1109/MHS.2009.5352027","url":null,"abstract":"RNA splicing endonuclease, which is conserved in Eukarya and Archaea, removes introns from eukaryotic nuclear tRNA and archaeal all RNA species. There are three types of subunit composition in archaeal RNA splicing endonucleases, namely α2 (homodimer in some Euryarchaea), α4 (homotetramer in other Euryarchaea) and (αβ)2 (heterotetramer in the Crenarchaea) types. In Crenarchaea, introns in precursor tRNA (pre-tRNA) molecules are found not only in anticodon arm but also in several other regions in tRNA such as D- and T-loops, variable region, and aminoacyl stem. These introns have a consensus bulge-helix-bulge motif. Crenarchaeal RNA splicing endonuclease can remove introns in such non-canonical sites. However, the broad cleavage site-specificity of the enzyme remains exclusive. Here, we report the cleavage activity of recombinant RNA splicing endonuclease from hyperthermophilic crenarcheon Aeropyrum pernix (APE) by using the pre-tRNAThr (UGU) and pre-tRNAThr (CGU), in which introns are located in anticodon and D-loops, respectively. Furthermore we report that APE RNA splicing enzyme crystallizes in space group P3(1) with two or three heterotetramers in an asymmetric unit. An X-ray diffraction data set has been collected to 2.8 Å resolution. Structural determination is now underway.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"46 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126580775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single live-bacterial cell assay of promoter activity and regulation: Escherichia coli gcl promoter 启动子活性和调控的单活细菌细胞测定:大肠杆菌gcl启动子
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5351949
J. Teramoto, Y. Yamanishi, El-Shimy H. Magdy, A. Hasegawa, M. Nakajima, T. Shimada, F. Arai, T. Fukuda, A. Ishihama
For measurement of the promoter activity and regulation within single bacterial cells, we constructed various types of the cell chip. After gelation of portions of E. coli culture wihin the cell chip, we have succeeded, for the first time, the real-time single-bacterial cell assay of promoter activity. Here we applied this newly developed system for measurement of the activity and regulation of E. coli gcl promoter.
为了测量单个细菌细胞内启动子的活性和调控,我们构建了不同类型的细胞芯片。在细胞芯片内的大肠杆菌培养部分凝胶化后,我们第一次成功地进行了启动子活性的实时单细胞检测。本研究将该系统应用于大肠杆菌gcl启动子活性和调控的测定。
{"title":"Single live-bacterial cell assay of promoter activity and regulation: Escherichia coli gcl promoter","authors":"J. Teramoto, Y. Yamanishi, El-Shimy H. Magdy, A. Hasegawa, M. Nakajima, T. Shimada, F. Arai, T. Fukuda, A. Ishihama","doi":"10.1109/MHS.2009.5351949","DOIUrl":"https://doi.org/10.1109/MHS.2009.5351949","url":null,"abstract":"For measurement of the promoter activity and regulation within single bacterial cells, we constructed various types of the cell chip. After gelation of portions of E. coli culture wihin the cell chip, we have succeeded, for the first time, the real-time single-bacterial cell assay of promoter activity. Here we applied this newly developed system for measurement of the activity and regulation of E. coli gcl promoter.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"42 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132601093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The effects of the current stimulation on electrical activity in dissociated neurons 电流刺激对游离神经元电活动的影响
Pub Date : 2009-12-11 DOI: 10.1109/MHS.2009.5352068
Minori Tokuda, A. Kiyohara, Takahisa Taguch, S. Kudoh
Rat hippocampal neurons were cultured on a dish with 64 micro planer electrodes. We found that the silent and reproducible period lasting for 1 sec immediately after the activity evoked in advance. In addition, the repetitive stimuli suppress the spontaneously occurring bursting activity in frequency. These results suggest that distinct internal state of the neuronal circuit was triggered by an electrical stimulation, and these dynamics of network activity may contribute to information processing. In previous study, we developed the neuro-robot system in which the neurons were connected to a robot body and interacted with external world. By utilizing the dynamics of a living neuronal network, it can be designed that, so to speak, the robot, which behaves according to the history of the sensor inputs which the neuronal network has memorized. We are verifying whether the dynamics intrinsic in a neural network can contribute to the action determination of a creature, by moving such a model system.
用64个微刨电极培养大鼠海马神经元。我们发现,在活动发生后立即出现持续1秒的沉默和再现期。此外,重复刺激在频率上抑制了自发发生的爆破活动。这些结果表明,电刺激可以触发神经元回路的不同内部状态,这些网络活动的动态可能有助于信息处理。在之前的研究中,我们开发了神经-机器人系统,其中神经元连接到机器人身体并与外部世界相互作用。通过利用一个活的神经网络的动力学,可以设计出,可以说,机器人,它的行为是根据神经网络记忆的传感器输入的历史。通过移动这样一个模型系统,我们正在验证神经网络中固有的动力学是否有助于生物的行动决定。
{"title":"The effects of the current stimulation on electrical activity in dissociated neurons","authors":"Minori Tokuda, A. Kiyohara, Takahisa Taguch, S. Kudoh","doi":"10.1109/MHS.2009.5352068","DOIUrl":"https://doi.org/10.1109/MHS.2009.5352068","url":null,"abstract":"Rat hippocampal neurons were cultured on a dish with 64 micro planer electrodes. We found that the silent and reproducible period lasting for 1 sec immediately after the activity evoked in advance. In addition, the repetitive stimuli suppress the spontaneously occurring bursting activity in frequency. These results suggest that distinct internal state of the neuronal circuit was triggered by an electrical stimulation, and these dynamics of network activity may contribute to information processing. In previous study, we developed the neuro-robot system in which the neurons were connected to a robot body and interacted with external world. By utilizing the dynamics of a living neuronal network, it can be designed that, so to speak, the robot, which behaves according to the history of the sensor inputs which the neuronal network has memorized. We are verifying whether the dynamics intrinsic in a neural network can contribute to the action determination of a creature, by moving such a model system.","PeriodicalId":344667,"journal":{"name":"2009 International Symposium on Micro-NanoMechatronics and Human Science","volume":"58 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2009-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128467901","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
期刊
2009 International Symposium on Micro-NanoMechatronics and Human Science
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1