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Disruption of the nucleocapsid-RNA condensation by punicalagin is a broad-spectrum antiviral approach 槟榔苷破坏核衣壳- rna缩合是一种广谱抗病毒方法
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2026-01-01 DOI: 10.1016/j.fmre.2025.07.007
Shao-Zhen Jiang , Liu-Bing Yu , Beilei Shen , Jie Pan , Xiao-Wei Li , Rong-Bo Luo , Ling-Jun Fan , Bing-Shuo Qian , Yunkai Zhu , Ziqiao Wang , Yu Liu , Tingting Li , Xin-Ran Zhang , Yu Yu , Wen Xue , Tian Xia , Hong Cai , Qiu-Ying Han , Kai Wang , Xin Xu , Tao Li
The formation of liquid condensates by nucleocapsid (N) protein and viral RNA is a critical and highly conserved event in the life cycle of numerous viruses. Targeting this process emerges as a possible strategy to combat viral infections. Here, we discover that punicalagin, a natural compound derived from Punica granatum, exhibits potent pan-antiviral activity. Through a screening of 2799 compounds, we identified that punicalagin inhibits the formation of N-RNA condensations at nanomolar concentrations, resulting in significant inhibition of viral replication. The oral administration of punicalagin effectively dampens the viral load in tissues of mice infected with various viruses, such as SARS-CoV-2, vesicular stomatitis virus (VSV) and influenza A virus (IAV). Moreover, we show that punicalagin also blocks the virus-stimulated inflammation by targeting mitochondrial antiviral signaling protein (MAVS), thereby alleviating tissue damage and lethality in the infected animals. Thus, by reporting that punicalagin targets the conserved process across different viruses, our work suggests a new paradigm for developing antiviral therapies against both current and future viral threats.
核衣壳蛋白(N)与病毒RNA形成液体凝聚体是许多病毒生命周期中一个关键且高度保守的事件。针对这一过程成为对抗病毒感染的一种可能策略。在这里,我们发现从石榴中提取的天然化合物石榴苷具有强大的泛抗病毒活性。通过对2799种化合物的筛选,我们发现punicalagin在纳摩尔浓度下抑制N-RNA凝聚的形成,从而显著抑制病毒复制。口服punicalagin可有效抑制感染多种病毒(如SARS-CoV-2、水疱性口炎病毒(VSV)和甲型流感病毒(IAV))的小鼠组织中的病毒载量。此外,我们发现punicalagin还通过靶向线粒体抗病毒信号蛋白(MAVS)来阻断病毒刺激的炎症,从而减轻受感染动物的组织损伤和致死率。因此,通过报道punicalagin靶向不同病毒的保守过程,我们的工作为开发针对当前和未来病毒威胁的抗病毒治疗提供了新的范例。
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引用次数: 0
Harnessing multi-omics and machine learning for predicting immune checkpoint blockade responses: Advances, challenges, and future directions 利用多组学和机器学习预测免疫检查点阻断反应:进展、挑战和未来方向
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2026-01-01 DOI: 10.1016/j.fmre.2025.08.009
Shiwei Cao , Junwei Liu , Yixue Li
Immune checkpoint blockade (ICB) therapies have revolutionized cancer treatment, showing success across various cancer types. However, there is variability in response rates among different cancers and individual patients. This highlights the critical need for precise patient stratification. Machine Learning and Deep Learning models are increasingly utilized to predict ICB responses by integrating multi-omics data, such as clinical, genomic, radiomic, and transcriptomic information. This review outlines the key methodologies of these predictive models. It underscores their role in enhancing response prediction. We delve into the advanced mechanisms of ICB response and discuss the biological foundations that inform these models. This demonstrates how basic research informs clinical application. We aim to offer comprehensive insights into how artificial intelligence can optimize patient stratification for ICB therapy.
免疫检查点阻断(ICB)疗法已经彻底改变了癌症治疗,在各种癌症类型中都取得了成功。然而,不同癌症和个体患者的反应率存在差异。这突出了对精确患者分层的迫切需要。机器学习和深度学习模型越来越多地用于通过整合多组学数据(如临床、基因组、放射组学和转录组学信息)来预测ICB反应。本文概述了这些预测模型的主要方法。它强调了它们在增强反应预测方面的作用。我们深入研究了ICB反应的高级机制,并讨论了为这些模型提供信息的生物学基础。这证明了基础研究如何影响临床应用。我们的目标是为人工智能如何优化ICB治疗的患者分层提供全面的见解。
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引用次数: 0
MULGONET: An interpretable neural network framework to integrate multi-omics data for cancer recurrence prediction and biomarker discovery MULGONET:一个可解释的神经网络框架,整合多组学数据,用于癌症复发预测和生物标志物发现
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2026-01-01 DOI: 10.1016/j.fmre.2025.01.004
Wei Lan , Zhentao Tang , Haibo Liao , Qingfeng Chen , Yi-Ping Phoebe Chen , Zhaolei Zhang , Jianxin Wang
Multi-omics cancer data provides complementary views of tumorigenesis and progression. Technical challenges exist in integrating these heterogeneous data into deep learning models to better understand tumorigenesis and predict cancer recurrence. We herein propose a novel end-to-end deep learning method (MULGONET) for cancer recurrence prediction and biomarker discovery. First, MULGONET can effectively solve the curse of dimensionality and the lack of model interpretability in multi-omics data integration. Second, it explores interactions and regulatory relationships between genes and GO terms, thus providing biological insights. Benchmark results show that MULGONET outperforms other contemporary classification methods. It achieves AUPRs of 0.774 ± 0.015, 0.873 ± 0.003 and 0.702 ± 0.011 on the bladder, pancreatic and stomach cancer datasets, respectively. We also show that MULGONET can effectively identify prognostic genes and GO terms associated with cancer recurrence.
多组学癌症数据提供了肿瘤发生和进展的补充观点。将这些异构数据整合到深度学习模型中以更好地了解肿瘤发生和预测癌症复发存在技术挑战。在此,我们提出了一种新的端到端深度学习方法(MULGONET),用于癌症复发预测和生物标志物发现。首先,MULGONET可以有效解决多组学数据集成中存在的维数困扰和模型可解释性不足的问题。其次,它探索基因与氧化石墨烯术语之间的相互作用和调控关系,从而提供生物学见解。基准测试结果表明,MULGONET优于其他当代分类方法。该方法在膀胱癌、胰腺癌和胃癌数据集上的aupr分别为0.774±0.015、0.873±0.003和0.702±0.011。我们还发现MULGONET可以有效地识别与癌症复发相关的预后基因和GO术语。
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引用次数: 0
Enhanced hole transport of nonpolar InGaN-based light-emitting diodes with lateral p-type superlattice doping structure 具有横向p型超晶格掺杂结构的非极性ingan基发光二极管的空穴输运增强
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2026-01-01 DOI: 10.1016/j.fmre.2024.03.028
Hongchang Tao , Shengrui Xu , Yachao Zhang , Huake Su , Yuan Gao , Xu Liu , Ruixue Ding , Lei Xie , Haitao Wang , Jincheng Zhang , Yue Hao
In this work, we propose a novel structure for nonpolar (10–10)-plane InGaN-based light-emitting diode (LED) using a lateral p-type Al0.2Ga0.8N/GaN superlattice structure as the hole injection layer. The main objective is to increase the hole concentration and facilitate vertical hole injection. The nonpolar InGaN-based LED lacks polarization along the growth plane (10–10), but the lateral direction along [0001] exhibits strong polarization. Therefore, the Al0.2Ga0.8N/GaN superlattice structure, which is periodic along the [0001] direction, induces net polarization charges at the GaN/Al0.2Ga0.8N interface, resulting in increased ionization rates of the acceptors. Additionally, the high-density two-dimensional hole gases formed at the Al0.2Ga0.8N/GaN interfaces along the [0001] direction can efficiently inject vertically into the quantum wells. Based on the numerical simulation results, the proposed LED structure offers improved electrical characteristics, effective hole injection, and enhanced optical performance compared to the nonpolar LED with conventional p-type doping structure.
在这项工作中,我们提出了一种采用横向p型Al0.2Ga0.8N/GaN超晶格结构作为空穴注入层的非极性(10-10)平面ingan基发光二极管(LED)的新结构。主要目的是提高井眼浓度,促进垂直井眼注入。非极性ingan基LED沿生长平面(10-10)缺乏极化,但沿[0001]的横向方向表现出强极化。因此,沿[0001]方向周期性的Al0.2Ga0.8N/GaN超晶格结构在GaN/Al0.2Ga0.8N界面处诱导出净极化电荷,导致受体电离率增加。此外,在Al0.2Ga0.8N/GaN界面沿[0001]方向形成的高密度二维空穴气体可以有效地垂直注入量子阱。基于数值模拟结果,与传统p型掺杂结构的非极性LED相比,所提出的LED结构具有更好的电特性、有效的空穴注入和更高的光学性能。
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引用次数: 0
Self-powered decentralized water treatment clean boat with electrochemical fenton system for antibiotic remediation in natural water bodies 基于电化学fenton系统的自供电分散式水处理清洁船用于天然水体的抗生素修复
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2026-01-01 DOI: 10.1016/j.fmre.2025.02.015
Zhongxin Chen, Xiaosong Gu, Xiang-Yang Lou, Huiling Zhou, Jiaxin Liang, Yangzi Shangguan, Hong Chen
Decentralized solutions for the low-cost and sustainable treatment of large-scale natural water bodies contaminated with organic pollutants are urgently needed. This study introduces a self-powered clean boat using a photovoltaic (PV)-driven electrochemical Fenton system, featuring a gas diffusion electrode (GDE) and a quasi-solid hydrogel electrolyte. This setup enables in-situ oxygen reduction in low-conductivity lake water, achieving a high H2O2 production rate of 290 ± 10 mg L1 h−1. The hydrogel, containing Fe2+/Fe3+ pairs, enriches ion concentration, enhances conductivity, and triggers the Fenton reaction to convert H2O2 into •OH radicals for efficient antibiotic degradation. The boat achieved a 99.4% removal rate for tetracycline (TC) at 1 mg L−1 in contaminated water within 3 h, demonstrating over 98% removal efficiency for other common antibiotics. This system integrates clean energy use, H2O2 production, Fenton reaction activation, and pollutant degradation, addressing the limitations of conventional electrochemical methods in low-conductivity waters. It offers a sustainable solution for decentralized water treatment in pilot-scale experiments with low unique energy consumption (0.43 kWh mg−1) by solar energy.
迫切需要低成本和可持续地处理被有机污染物污染的大规模自然水体的分散解决方案。本研究介绍了一种使用光伏(PV)驱动的电化学Fenton系统的自供电清洁船,该系统具有气体扩散电极(GDE)和准固体水凝胶电解质。该装置可在低电导率的湖水中实现原位氧还原,H2O2产量高达290±10 mg L−1 h−1。该水凝胶含有Fe2+/Fe3+对,可富集离子浓度,增强电导率,并触发Fenton反应将H2O2转化为•OH自由基,有效降解抗生素。该船在污染水中以1 mg L−1的浓度在3小时内对四环素(TC)的去除率达到99.4%,对其他常见抗生素的去除率超过98%。该系统集成了清洁能源利用、H2O2生产、Fenton反应活化和污染物降解,解决了传统电化学方法在低电导率水域中的局限性。它为中试规模实验中的分散式水处理提供了可持续的解决方案,太阳能的独特能耗低(0.43 kWh mg - 1)。
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引用次数: 0
Expanding bioinformatics: Toward a paradigm shift from data to theory 扩展生物信息学:迈向从数据到理论的范式转变
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2026-01-01 DOI: 10.1016/j.fmre.2024.11.019
Zhang Zhang
Bioinformatics is an interdisciplinary, fast-developing, and broad-ranging field, coevolving with and empowered by advanced technologies across multiple related disciplines. Given the ever-growing volume of biological data generated at multiple levels and scales, bioinformatics represents a holistic approach to decipher the complexity of biological systems and thus holds significant potential to realize a paradigm shift by transforming data to theory. Here I articulate a vision of expanding bioinformatics from data to theory that paves the way for the paradigm shift in biology, which can consolidate fragmented research findings within a theoretical framework, drive theory-guided AI modelling and experimentation with enhanced explainability and reduced parameter space, drive biological research from a holistic perspective, and further strengthen the identity and coherence of bioinformatics as a discipline.
生物信息学是一个跨学科的、快速发展的、广泛的领域,与多个相关学科的先进技术共同发展并得到了它们的支持。鉴于在多个层次和尺度上产生的生物数据量不断增长,生物信息学代表了一种解读生物系统复杂性的整体方法,因此通过将数据转化为理论来实现范式转变具有重大潜力。在这里,我阐述了将生物信息学从数据扩展到理论的愿景,为生物学的范式转变铺平了道路,这可以在理论框架内整合碎片化的研究成果,推动理论指导的人工智能建模和实验,增强可解释性和减少参数空间,从整体角度推动生物学研究,并进一步加强生物信息学作为一门学科的身份和一致性。
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引用次数: 0
Application of stellate ganglion modulation in mental disorders and the future prospects of physical therapies 星状神经节调节在精神障碍中的应用及物理治疗的未来展望
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2026-01-01 DOI: 10.1016/j.fmre.2025.09.024
Yu’ang Liu , Linzi Liu , Zijing Deng , Yifang Zhou , Li Xiao , Yanqing Tang
The treatment of mental disorders faces significant challenges due to their complex etiology and the limitations of existing therapies. Neuromodulation has emerged as a promising approach for managing these conditions. Among the various neuromodulatory strategies, stellate ganglion modulation (SGM) specifically targets the sympathetic nervous system by inhibiting neural activity at the cervical stellate ganglion (SG). Stellate ganglion block (SGB), a chemical form of SGM achieved through local anesthetic injection into the SG, suppresses sympathetic nerve impulses to the head, neck, and upper limbs. Evidence suggests that SGB offers a favorable safety profile and demonstrates notable efficacy in treating post-traumatic stress disorder. Moreover, preliminary findings indicate its potential in managing depression and sleep disorders. Current hypotheses propose that SGB alleviates psychological symptoms via two pathways: ascending regulation, which modulates neuroendocrine activity and neuroinflammation, and descending regulation, which influences cardiovascular and digestive functions, thereby engaging the heart–brain and gut–brain axes. Recently, physical energy-based modalities for SGM, including electrical, magnetic, optical, thermal, and ultrasonic stimulation, have been explored as alternatives to conventional chemical modulation. Invasive physical methods such as electroacupuncture and radiofrequency ablation show preliminary efficacy and safety, while noninvasive approaches provide simpler and safer options, with some evidence of benefit in conditions such as arrhythmia. However, clinical validation in psychiatric populations remains limited. Despite the therapeutic promise of physical SGM, key questions persist regarding its mechanisms, efficacy, and safety in mental disorders. Future research should aim to expand preclinical studies, verify these techniques in psychiatric populations, standardize stimulation parameters, develop closed-loop feedback systems, and assess long-term outcomes.
由于其复杂的病因和现有治疗方法的局限性,精神障碍的治疗面临着重大挑战。神经调节已经成为一种很有前途的治疗这些疾病的方法。在各种神经调节策略中,星状神经节调节(SGM)通过抑制颈星状神经节(SG)的神经活动特异性地作用于交感神经系统。星状神经节阻滞(SGB)是一种化学形式的SGM,通过向SG注射局麻药来抑制头部、颈部和上肢的交感神经冲动。有证据表明,SGB具有良好的安全性,并在治疗创伤后应激障碍方面表现出显著的疗效。此外,初步研究结果表明,它在治疗抑郁症和睡眠障碍方面具有潜力。目前的假设认为,SGB通过两条途径缓解心理症状:上行调节,通过调节神经内分泌活动和神经炎症;下行调节,通过影响心血管和消化功能,从而参与心脑和肠脑轴。最近,基于物理能量的SGM模式,包括电、磁、光、热和超声波刺激,已经被探索作为传统化学调制的替代品。电针和射频消融等侵入性物理方法显示出初步的有效性和安全性,而非侵入性方法提供了更简单和更安全的选择,并有证据表明对心律失常等疾病有益。然而,在精神病人群中的临床验证仍然有限。尽管生理上的SGM有治疗前景,但关于其在精神障碍中的机制、疗效和安全性的关键问题仍然存在。未来的研究应着眼于扩大临床前研究,在精神病学人群中验证这些技术,标准化刺激参数,开发闭环反馈系统,并评估长期结果。
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引用次数: 0
Spin vector potential and spin Aharonov-Bohm effect 自旋矢量势和自旋Aharonov-Bohm效应
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2025-11-01 DOI: 10.1016/j.fmre.2023.10.003
Jing-Ling Chen , Xing-Yan Fan , Xiang-Ru Xie
The Aharonov-Bohm (AB) effect is an important discovery of quantum theory. It serves as a surprising quantum phenomenon in which an electrically charged particle can be affected by an electromagnetic potential, despite being confined to a region in which both the magnetic field and electric field are zero. This fact gives the electromagnetic potentials greater significance in quantum physics than in classical physics. The original AB effect belongs to an “electromagnetic type”. A certain vector potential is crucial for building a certain type of AB effect. In this work, we focus on the “spin”, which is an intrinsic property of microscopic particles that has been widely accepted nowadays. First, we propose the hypothesis of spin vector potential by considering a particle with a spin operator. Second, to verify the existence of such a spin vector potential, we present a gedanken double-slit interference experiment (i.e., the spin AB effect), which is possible to be observed in the lab. Third, we apply the spin vector potential to naturally explain why there were the Dzyaloshinsky-Moriya-type interaction and the dipole-dipole interaction between spins, and also predict a new type of spin-orbital interaction.
Aharonov-Bohm (AB)效应是量子理论的一个重要发现。这是一种令人惊讶的量子现象,其中带电粒子可以受到电磁势的影响,尽管它被限制在磁场和电场都为零的区域内。这一事实使电磁势在量子物理学中比在经典物理学中具有更大的意义。原AB效应属于“电磁型”。特定的向量势对于构建特定类型的AB效应至关重要。在这项工作中,我们关注的是“自旋”,这是目前被广泛接受的微观粒子的固有特性。首先,我们通过考虑具有自旋算子的粒子,提出了自旋矢量势的假设。其次,为了验证这种自旋矢量势的存在,我们提出了一个可以在实验室中观察到的双缝干涉实验(即自旋AB效应)。第三,我们运用自旋矢量势自然地解释了自旋之间存在dzyaloshinsky - moriya型相互作用和偶极子-偶极子相互作用的原因,并预测了一种新的自旋-轨道相互作用。
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引用次数: 0
Breakup dynamics of weakly bound nuclei at energies around the Coulomb barrier 库仑势垒周围弱束缚核的分裂动力学
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2025-11-01 DOI: 10.1016/j.fmre.2023.10.006
L. Yang , C.J. Lin , N.R. Ma , P.W. Wen , H.M. Jia , F. Yang
The present work provides a literature survey of breakup reactions induced by weakly bound nuclei at energies around the Coulomb barrier. We review the inclusive and exclusive breakup data of stable weakly bound nuclei 6,7Li and 9Be, as well as light radioactive projectiles reported within the last decade. Several theoretical and data analysis tools used to describe the data are reviewed as well. Similarities and differences in the behavior of breakup reactions involving these weakly bound nuclei are discussed. It is found that, for 6,7Li and 9Be, transfer-triggered breakup is a significant mode, which, however, is not observed in drip-line nuclear systems. Moreover, differences in the breakup dynamics and the contribution of breakup to the total reaction cross section at energies close to the Coulomb barrier seem to emerge between neutron-halo and proton-halo systems. Possible explanations for the observed differences are discussed.
本文综述了库仑势垒周围弱束缚原子核引起的分裂反应。我们回顾了近十年来报道的稳定弱束缚原子核6,7li和9Be的包含和不包含的分裂数据,以及轻放射性弹丸。几个理论和数据分析工具,用于描述数据进行了审查。讨论了涉及这些弱束缚核的分裂反应行为的异同。研究发现,对于6,7li和9Be,转移引发的破裂是一个重要的模式,而在滴线核系统中没有观察到这种模式。此外,在中子-晕和质子-晕体系之间,在接近库仑势垒的能量处,分裂动力学和分裂对总反应截面的贡献似乎有所不同。对观察到的差异的可能解释进行了讨论。
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引用次数: 0
Pushing forward kinetic modeling tools for polymer circularity design and recycling 推动聚合物循环设计和回收的动力学建模工具
IF 6.3 3区 综合性期刊 Q1 Multidisciplinary Pub Date : 2025-11-01 DOI: 10.1016/j.fmre.2025.01.014
Jiang Wang , Tian-Tian Wang , Robert Conka , Dagmar R. D'hooge , Zheng-Hong Luo , Yin-Ning Zhou
Polymer circularity has received increasing attention due to ecological benefits, by which plastic waste should be reused or converted into high-value products in an economic framework balanced with virgin polymer production. From a chemical engineering point of view, the understanding of reaction kinetics and chemical modifications plays a crucial role in improving the process towards polymer circularity. This reaction kinetics is connected to molecular variations for which (micro)kinetic models are essential. In this perspective, the main kinetic simulation methods are summarized, focusing on their respective characteristics and challenges, besides differentiating between deterministic and stochastic methods. The application of kinetic simulations in polymer circularity processes is clarified in the form of three case studies, including (i) mechanical recycling with deliberate chemical modification by reactive extrusion, (ii) chemical recycling aiming at monomer recovery, and (iii) recycling-by-design aiming at vitrimer molecular design. Attention is also paid to the relevance of benchmarking the methods applied.
聚合物循环由于其生态效益而受到越来越多的关注,通过这种循环,塑料废物应该在与原始聚合物生产平衡的经济框架中被再利用或转化为高价值产品。从化学工程的角度来看,对反应动力学和化学修饰的理解在改善聚合物的循环过程中起着至关重要的作用。这种反应动力学与分子变化有关,其中(微)动力学模型是必不可少的。从这个角度总结了主要的动力学仿真方法,重点分析了它们各自的特点和面临的挑战,并对确定性方法和随机方法进行了区分。动力学模拟在聚合物循环过程中的应用以三个案例研究的形式进行了澄清,包括(i)通过反应挤出进行故意化学改性的机械回收,(ii)旨在单体回收的化学回收,以及(iii)旨在聚合物分子设计的设计回收。还注意对所采用的方法进行基准测试的相关性。
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引用次数: 0
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Fundamental Research
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