Intracellular organelles are critical for regulating biochemical and signaling events essential for cellular homeostasis. Their dynamic behaviors, including morphology, localization, interactions, and turnover, significantly influence cell fate under physiological and pathological conditions. Recent advances in materials science, cell biology, and nanotechnology have enabled precise modulation of organelle dynamics using engineered bioactive materials. Nanoplatforms with tunable chemical and structural properties show exceptional potential for interfacing with organelles, facilitating synergistic signaling for targeted regulation. These material-organelle interactions can disrupt aberrant functions or restore equilibrium, offering novel therapeutic strategies for diseases like cancer, neurodegeneration, and metabolic disorders. However, the mechanisms underlying nanomaterial-mediated organelle modulation remain poorly understood, and clinical translation faces challenges, with few FDA- or EMA-approved nanotherapeutics available. This review summarizes progress in nanomaterial-mediated regulation of organelle dynamics, focusing on mitochondria, lysosomes, and the endoplasmic reticulum. It outlines design principles for organelle-targeting materials, surveys tools for monitoring organelle behavior, and discusses molecular mechanisms of intracellular modulation. Additionally, it addresses challenges and opportunities for clinical translation and proposes future research directions to inspire next-generation therapeutic materials for precise subcellular intervention.
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