Pub Date : 2026-02-07DOI: 10.1021/acs.jafc.5c09758
Qianqian Zhong, Yiting Wei, Zhen Zhang, Luyao Tang, Yuqing Xu, Yuhan Ye, Jun Liu, Xiong Yao, Li Zhu, Weilin Zhang, Yuexing Wang, Yuchun Rao
Rice lesion mimic mutants (LMMs) spontaneously form lesion-like symptoms without pathogen infection and are vital for studying plant immune and defense responses. Here, we identified an EMS-mutagenized Nipponbare-derived LMM, russet spots leaf (rsp), exhibiting leaf russet spots and deteriorated agronomic traits with significantly reduced grain yield. These abnormal phenotypes correlate with impaired photosynthetic efficiency, aberrant programmed cell death (PCD) and excessive reactive oxygen species (ROS) accumulation. Moreover, rsp shows enhanced resistance to bacterial blight and rice stripe virus, driven by altered defense-related genes and metabolites. Map-based cloning localized RSP (encoding MED subunit 33a), where a single nucleotide substitution causes its inactivation. This mutation alters plant responses to abiotic stresses and exogenous hormones, likely via disrupting its conserved domain mediating multiple biological processes. Our findings confirm RSP as a pivotal regulator of immune responses and grain yield, laying a theoretical foundation for breeding high-yield, high-quality and disease-resistant rice cultivars.
{"title":"RSP Gene Encodes a MED Subunit 33a, Which Is Involved in the Regulation of PCD and Immune Responses.","authors":"Qianqian Zhong, Yiting Wei, Zhen Zhang, Luyao Tang, Yuqing Xu, Yuhan Ye, Jun Liu, Xiong Yao, Li Zhu, Weilin Zhang, Yuexing Wang, Yuchun Rao","doi":"10.1021/acs.jafc.5c09758","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c09758","url":null,"abstract":"<p><p>Rice lesion mimic mutants (LMMs) spontaneously form lesion-like symptoms without pathogen infection and are vital for studying plant immune and defense responses. Here, we identified an EMS-mutagenized Nipponbare-derived LMM, russet spots leaf (rsp), exhibiting leaf russet spots and deteriorated agronomic traits with significantly reduced grain yield. These abnormal phenotypes correlate with impaired photosynthetic efficiency, aberrant programmed cell death (PCD) and excessive reactive oxygen species (ROS) accumulation. Moreover, rsp shows enhanced resistance to bacterial blight and rice stripe virus, driven by altered defense-related genes and metabolites. Map-based cloning localized RSP (encoding MED subunit 33a), where a single nucleotide substitution causes its inactivation. This mutation alters plant responses to abiotic stresses and exogenous hormones, likely via disrupting its conserved domain mediating multiple biological processes. Our findings confirm RSP as a pivotal regulator of immune responses and grain yield, laying a theoretical foundation for breeding high-yield, high-quality and disease-resistant rice cultivars.</p>","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":" ","pages":""},"PeriodicalIF":6.2,"publicationDate":"2026-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146130515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Catalytic promiscuity provides fundamental insights into enzyme evolution. To address the multiobjective challenges in discovering and evolving promiscuous activities, we developed EnzySFC, an AI-assisted platform that combines de novo enzyme discovery with functional evolution, enabling coordinated optimization of activity and specificity. Using EnzySFC, we experimentally validated 10 uncharacterized nitrilases from 1113 candidates: 90% showed catalytic activity toward the target substrate, and 80% demonstrated amide formation. Notably, a wild-type nitrilase from a Phototrophicales bacterium exhibited exclusive nitrile hydratase activity. Through AI-driven evolution, 16 mutants of a nitrilase from an Actinomycetia bacterium were experimentally verified within a single prediction cycle. Seven variants displayed increased amide production, five of which exceeded 80% amide proportion. The top four variants achieved a 100% amide yield with complete substrate conversion. This platform establishes a transferable framework for multiobjective enzyme engineering and accelerates the development of efficient enzyme catalysts.
{"title":"Artificial Intelligence Platform EnzySFC for Enzyme Screening and Functional Conversion: Completely Redirecting Nitrilase to Nitrile Hydratase Function","authors":"Shuiqin Jiang, Zhelin Zheng, Hua Dong, Siwei Zhang, Qi Tong, Dong Yi","doi":"10.1021/acs.jafc.5c14148","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c14148","url":null,"abstract":"Catalytic promiscuity provides fundamental insights into enzyme evolution. To address the multiobjective challenges in discovering and evolving promiscuous activities, we developed EnzySFC, an AI-assisted platform that combines de novo enzyme discovery with functional evolution, enabling coordinated optimization of activity and specificity. Using EnzySFC, we experimentally validated 10 uncharacterized nitrilases from 1113 candidates: 90% showed catalytic activity toward the target substrate, and 80% demonstrated amide formation. Notably, a wild-type nitrilase from a <i>Phototrophicales bacterium</i> exhibited exclusive nitrile hydratase activity. Through AI-driven evolution, 16 mutants of a nitrilase from an <i>Actinomycetia bacterium</i> were experimentally verified within a single prediction cycle. Seven variants displayed increased amide production, five of which exceeded 80% amide proportion. The top four variants achieved a 100% amide yield with complete substrate conversion. This platform establishes a transferable framework for multiobjective enzyme engineering and accelerates the development of efficient enzyme catalysts.","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":"10 1","pages":""},"PeriodicalIF":6.1,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146122240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
NAFLD-related hepatic steatosis is a growing global health concern. We developed food-grade gliadin hydrolysate-berberine-chitosan nanoparticles (BBR-NPs) and evaluated their bioactivity in oleic acid-challenged HepG2 cells and high-fat diet (HFD)-fed mice. In vitro, BBR-NPs reduced triglycerides, total cholesterol, and LDL-C, increased HDL-C, and alleviated oxidative stress by decreasing ROS and malondialdehyde while enhancing superoxide dismutase activity. In vivo, oral BBR-NPs attenuated hepatic lipid deposition and improved serum/hepatic lipid indices, ALT/AST, oxidative stress markers, insulin resistance, and inflammatory cytokines, with generally more pronounced effects than free berberine at the same nominal dose in this model. Integrated hepatic metabolomics and transcriptomics suggested coordinated regulation of lipid homeostasis, including fatty acid oxidation, de novo lipogenesis, and cholesterol/bile acid metabolism. Collectively, BBR-NPs represent a scalable oral delivery approach that may enhance berberine's metabolic benefits in diet-induced steatosis; however, pharmacokinetic and tissue exposure studies are needed to confirm formulation-specific advantages.
{"title":"Nanoparticle-Based Oral Delivery of Berberine Attenuates High-Fat Diet-Induced Hepatic Steatosis in Mice: Insights from Integrated Hepatic Metabolomic and Transcriptomic Analyses.","authors":"Xiaoxiao Li, Xiaofeng Miao, Xinrui Zhang, Hailong Tian, Luyang Wang, Jin Liu, Jinyang Zhang, Rui Tan, Jihong Huang","doi":"10.1021/acs.jafc.5c15040","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c15040","url":null,"abstract":"<p><p>NAFLD-related hepatic steatosis is a growing global health concern. We developed food-grade gliadin hydrolysate-berberine-chitosan nanoparticles (BBR-NPs) and evaluated their bioactivity in oleic acid-challenged HepG2 cells and high-fat diet (HFD)-fed mice. <i>In vitro</i>, BBR-NPs reduced triglycerides, total cholesterol, and LDL-C, increased HDL-C, and alleviated oxidative stress by decreasing ROS and malondialdehyde while enhancing superoxide dismutase activity. <i>In vivo</i>, oral BBR-NPs attenuated hepatic lipid deposition and improved serum/hepatic lipid indices, ALT/AST, oxidative stress markers, insulin resistance, and inflammatory cytokines, with generally more pronounced effects than free berberine at the same nominal dose in this model. Integrated hepatic metabolomics and transcriptomics suggested coordinated regulation of lipid homeostasis, including fatty acid oxidation, de novo lipogenesis, and cholesterol/bile acid metabolism. Collectively, BBR-NPs represent a scalable oral delivery approach that may enhance berberine's metabolic benefits in diet-induced steatosis; however, pharmacokinetic and tissue exposure studies are needed to confirm formulation-specific advantages.</p>","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":" ","pages":""},"PeriodicalIF":6.2,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146130566","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The growing global demand for food is limited by low seed germination rates, a key constraint in crop production. Priestia megaterium W101, a plant growth-promoting rhizobacterium with high indole-3-acetic acid (IAA) yield, was found to significantly promote the germination of wheat seeds and the growth of the root system. For the first time, we characterized in Priestia megaterium a complete indole-3-pyruvic acid (IPyA) pathway, encoded by ipdC, patB, feaB, and gene1566, together with a yedL-encoded alternative pathway, through integrated multiomics analyses and CRISPR/Cas9-mediated heterologous expression. In addition, we reconstructed the complete IPyA pathway in Bacillus subtilis 168, which increased IAA production by approximately 98% compared to that in the wild-type strain. Overall, this study elucidates the IAA biosynthetic network in W101 and highlights its potential as a core strain for sustainable microbial inoculant development in green agriculture.
{"title":"Exploration and Confirmation of the Indole-3-Acetic Acid Biosynthetic Pathway in Plant Growth-Promoting Rhizobacteria Priestia megaterium W101","authors":"Xu Wang, Fan Wang, Ruinan Zhang, Litao Wang, Haiyan Wang, Hai Zhang, Chenying Wu, Hengran Yi, Yindi Nan, Shumin Li, Yongqiang Tian, Yanli Zheng","doi":"10.1021/acs.jafc.5c13041","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c13041","url":null,"abstract":"The growing global demand for food is limited by low seed germination rates, a key constraint in crop production. <i>Priestia megaterium</i> W101, a plant growth-promoting rhizobacterium with high indole-3-acetic acid (IAA) yield, was found to significantly promote the germination of wheat seeds and the growth of the root system. For the first time, we characterized in <i>Priestia megaterium</i> a complete indole-3-pyruvic acid (IPyA) pathway, encoded by <i>ipdC</i>, <i>patB</i>, <i>feaB</i>, and <i>gene1566</i>, together with a <i>yedL</i>-encoded alternative pathway, through integrated multiomics analyses and CRISPR/Cas9-mediated heterologous expression. In addition, we reconstructed the complete IPyA pathway in <i>Bacillus subtilis</i> 168, which increased IAA production by approximately 98% compared to that in the wild-type strain. Overall, this study elucidates the IAA biosynthetic network in W101 and highlights its potential as a core strain for sustainable microbial inoculant development in green agriculture.","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":"1 1","pages":""},"PeriodicalIF":6.1,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146122237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This work constructed a recombinant lactic acid bacterium secreting β-galactosidase for GOS formation during milk fermentation. First, GalINF, a β-galactosidase derived from infant feces, was characterized to effectively produce GOS in milk, reaching a content of 10.03 g/L. To export GalINF in Lactococcus lactis, six signal peptide candidates were employed, resulting in extracellular activities as low as 52.83–85.65 U/L. Then, GalINF (114.6 kDa) was split into two complementary modules, M1-P723 and A724-I1023, which could be independently secreted and actively reconstituted with the help of the protein scaffold SpyCatcher/SpyTag. The resultant Lc. lactis B1RG exhibited an extracellular β-galactosidase activity of 544.22 U/L. Fermentation of pasteurized milk with Lc. lactis B1RG and the traditional yogurt starters reduced lactose to 19.67 g/L and yielded 7.17 g/L GOS. This work established an effective strategy to export large-sized proteins extracellularly and demonstrated the applicability of LAB secreting β-galactosidase for GOS-enriched fermented dairy products.
{"title":"Secretion of β-Galactosidase in Lactic Acid Bacteria Mediated by Enzyme-Active Reconstitution and Its Potential for GOS Formation During Milk Fermentation","authors":"Meng Wang, Tingting Zhang, Yu Lou, Wentao Kong, Jian Kong, Tingting Guo","doi":"10.1021/acs.jafc.5c15973","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c15973","url":null,"abstract":"This work constructed a recombinant lactic acid bacterium secreting β-galactosidase for GOS formation during milk fermentation. First, Gal<sub>INF</sub>, a β-galactosidase derived from infant feces, was characterized to effectively produce GOS in milk, reaching a content of 10.03 g/L. To export Gal<sub>INF</sub> in <i>Lactococcus lactis</i>, six signal peptide candidates were employed, resulting in extracellular activities as low as 52.83–85.65 U/L. Then, Gal<sub>INF</sub> (114.6 kDa) was split into two complementary modules, M<sub>1</sub>-P<sub>723</sub> and A<sub>724</sub>-I<sub>1023</sub>, which could be independently secreted and actively reconstituted with the help of the protein scaffold SpyCatcher/SpyTag. The resultant <i>Lc. lactis</i> B1RG exhibited an extracellular β-galactosidase activity of 544.22 U/L. Fermentation of pasteurized milk with <i>Lc. lactis</i> B1RG and the traditional yogurt starters reduced lactose to 19.67 g/L and yielded 7.17 g/L GOS. This work established an effective strategy to export large-sized proteins extracellularly and demonstrated the applicability of LAB secreting β-galactosidase for GOS-enriched fermented dairy products.","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":"83 1","pages":""},"PeriodicalIF":6.1,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146122516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Phosphorus (P) deficiency reduces the crop yield, yet its impact on legume seed quality remains unclear. Herein, we found that phosphate (Pi) starvation led to a significant decrease in soybean (Glycine max) yield. However, seed nitrogen, protein, and amino acid concentrations were significantly increased by Pi starvation. Combined with ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) and RNA sequencing analyses of developing seeds, a total of 522 differentially accumulated metabolites (DAMs) were identified, particularly increased accumulations of amino acids, such as l-arginine and l-glutamine. Meanwhile, a total of 3793 differentially expressed genes (DEGs) were detected, with 1764 upregulated and 2029 downregulated by Pi starvation. Notably, the integration of metabolomic and transcriptomic analyses revealed a tight connection between DEGs and DAMs in developing seeds, especially for nitrogen translocation and assimilation. Collectively, this study highlights the complex and distinct responses of young soybean seeds to P deficiency, which provides candidate genes for improving the soybean seed protein concentration.
{"title":"Integrated Metabolomic and Transcriptomic Analysis Reveals Mechanisms Underlying Increased Nitrogen and Protein Concentrations by Phosphorus Deficiency in Soybean Seeds","authors":"Cang Tian, Qi Guo, Meiling Hu, Xing Lu, Tianqi Wang, Cuiyue Liang, Jiang Tian","doi":"10.1021/acs.jafc.5c12081","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c12081","url":null,"abstract":"Phosphorus (P) deficiency reduces the crop yield, yet its impact on legume seed quality remains unclear. Herein, we found that phosphate (Pi) starvation led to a significant decrease in soybean (<i>Glycine max</i>) yield. However, seed nitrogen, protein, and amino acid concentrations were significantly increased by Pi starvation. Combined with ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) and RNA sequencing analyses of developing seeds, a total of 522 differentially accumulated metabolites (DAMs) were identified, particularly increased accumulations of amino acids, such as <span>l</span>-arginine and <span>l</span>-glutamine. Meanwhile, a total of 3793 differentially expressed genes (DEGs) were detected, with 1764 upregulated and 2029 downregulated by Pi starvation. Notably, the integration of metabolomic and transcriptomic analyses revealed a tight connection between DEGs and DAMs in developing seeds, especially for nitrogen translocation and assimilation. Collectively, this study highlights the complex and distinct responses of young soybean seeds to P deficiency, which provides candidate genes for improving the soybean seed protein concentration.","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":"68 1","pages":""},"PeriodicalIF":6.1,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146122530","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-06DOI: 10.1021/acs.jafc.5c12554
Yaxuan Jiang, Ximei Ji, Le Ma, Mingjing Li, Shutian Fan, Pei Lei, Fanjuan Meng
Low temperature has a serious effect on Actinidia arguta growth and development. However, the mechanisms of how MYB proteins participate in freezing stress in A. arguta are still unclear. In this study, AaMYB16 was transformed into Arabidopsis thaliana and A. arguta. The relevant physiological and biochemical indexes were determined, and the regulatory model of AaMYB16 was preliminarily discussed. The results showed that there was an interaction between AaMYB16 and AabHLH137. AabHLH18 and AabHLH137 played a role in the upstream of AaMYB16. Overexpress AaMYB16 increased plant susceptibility to freezing stress, whereas silencing AaMYB16 enhanced freezing tolerance in A. arguta. Our results suggest that AaMYB16 is a negative regulator of freeze response in A. arguta. The AabHLH18/AabHLH137-AaMYB16 module plays an important role in freezing stress. These results provide insights into the molecular mechanism of low-temperature regulation of A. arguta, and a theoretical basis for fruit storage and breeding of A. arguta.
{"title":"The Transcription Factor AaMYB16 Regulates Freezing Stress in <i>Actinidia Arguta</i> Siebold & Zucc. Planch. ex Miq.","authors":"Yaxuan Jiang, Ximei Ji, Le Ma, Mingjing Li, Shutian Fan, Pei Lei, Fanjuan Meng","doi":"10.1021/acs.jafc.5c12554","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c12554","url":null,"abstract":"<p><p>Low temperature has a serious effect on <i>Actinidia arguta</i> growth and development. However, the mechanisms of how MYB proteins participate in freezing stress in <i>A. arguta</i> are still unclear. In this study, <i>AaMYB16</i> was transformed into <i>Arabidopsis thaliana</i> and <i>A. arguta</i>. The relevant physiological and biochemical indexes were determined, and the regulatory model of <i>AaMYB16</i> was preliminarily discussed. The results showed that there was an interaction between AaMYB16 and AabHLH137. AabHLH18 and AabHLH137 played a role in the upstream of <i>AaMYB16</i>. Overexpress <i>AaMYB16</i> increased plant susceptibility to freezing stress, whereas silencing <i>AaMYB16</i> enhanced freezing tolerance in <i>A. arguta</i>. Our results suggest that <i>AaMYB16</i> is a negative regulator of freeze response in <i>A. arguta</i>. The AabHLH18/AabHLH137-AaMYB16 module plays an important role in freezing stress. These results provide insights into the molecular mechanism of low-temperature regulation of <i>A. arguta</i>, and a theoretical basis for fruit storage and breeding of <i>A. arguta</i>.</p>","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":" ","pages":""},"PeriodicalIF":6.2,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146130551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-06DOI: 10.1021/acs.jafc.5c11974
Huixia Di, Zhouhao Lei, Jianing Li, Xiaochun Li
The accurate detection of hazardous pesticide residues is crucial for public health. Surface-enhanced Raman scattering (SERS) holds potential but faces practical limitations, including spectral overlap and matrix interference. To address these limitations, we developed a convolutional neural network (CNN)-assisted SERS platform with a hybrid substrate comprising a silver nanostar (AgNS) and hydrophobic silver nanoisland film (AgNIF). This platform synergizes localized surface plasmon resonance with a local concentration effect to achieve high sensitivity, demonstrating a broad linear range and low detection limits for nine pesticides. Coupled with an optimal data preprocessing protocol, our CNN model achieved superior classification accuracy: 99.44% for single pesticides, 98.47% for binary mixtures, 98.09% for ternary mixtures, and 94.60% in spiked tomato samples. Therefore, this work demonstrates a label-free, sensitive and accurate tool for pesticide detection and identification, holding great promise for guiding pesticide application and ensuring food safety.
{"title":"A Highly Sensitive Silver Nanostars/Silver Nanoisland Films Hybrid SERS Platform Assisted by a Convolutional Neural Network for Accurate Pesticide Detection","authors":"Huixia Di, Zhouhao Lei, Jianing Li, Xiaochun Li","doi":"10.1021/acs.jafc.5c11974","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c11974","url":null,"abstract":"The accurate detection of hazardous pesticide residues is crucial for public health. Surface-enhanced Raman scattering (SERS) holds potential but faces practical limitations, including spectral overlap and matrix interference. To address these limitations, we developed a convolutional neural network (CNN)-assisted SERS platform with a hybrid substrate comprising a silver nanostar (AgNS) and hydrophobic silver nanoisland film (AgNIF). This platform synergizes localized surface plasmon resonance with a local concentration effect to achieve high sensitivity, demonstrating a broad linear range and low detection limits for nine pesticides. Coupled with an optimal data preprocessing protocol, our CNN model achieved superior classification accuracy: 99.44% for single pesticides, 98.47% for binary mixtures, 98.09% for ternary mixtures, and 94.60% in spiked tomato samples. Therefore, this work demonstrates a label-free, sensitive and accurate tool for pesticide detection and identification, holding great promise for guiding pesticide application and ensuring food safety.","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":"110 1","pages":""},"PeriodicalIF":6.1,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146122235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-06DOI: 10.1021/acs.jafc.5c12678
Shousheng Liu, Haiping Zhang, Ronghuan Du, Xi Gao, Tianren Wang, Wenping Qin, Dan Sun, Hui Liang, Peng Wang
Emerging research evidence has established the critical role of inflammatory cascades in the development and progression of alcoholic liver injury with hepatocellular death serving as a principal driver. Notably, the dysregulated interplay between mitochondrial homeostasis and pyroptosis is primarily responsible for the alcohol-induced aberrant liver immune microenvironment, characterized by nonresolving inflammation. Given the considerable limitations in the current treatment for alcoholic steatohepatitis (ASH), it is imperative to explore targeted nutritional interventions as alternative therapies. Here, we established an ASH model with C57BL/6J mice and demonstrated that astaxanthin (AST) administration significantly protected against alcohol-induced inflammatory liver injury through dual mechanisms: 1) suppression of hepatocyte pyroptosis by inhibiting the NLRP-3/Caspase/GSDMD signaling axis and 2) mitigation of mitochondrial dysfunction evidenced by structural membrane integrity restoration and redox homeostasis rebalancing. Mechanistically, AST intervention impeded the cytoplasmic translocation of mitochondrial DNA (mtDNA), thereby concurrently inhibiting AIM2 inflammasome activation and cGAS/STING signaling. In vitro studies further confirmed dose-dependent attenuation of alcohol-induced hepatotoxicity by AST, marked by reduced pyroptotic cell death and diminished proinflammatory cytokine secretion (IL-1β, IL-18). Mitochondrial protection was further evidenced through restored membrane potential (ΔΨm), decreased cytoplasmic Cytochrome C release, and attenuated mtDNA leakage. Moreover, we identified a novel molecular interaction, wherein AST competitively binds lipid-binding motifs within the β1-β2 loop of the GSDMD-N-terminal domain, potentially interfering with pyroptotic pore formation. Further overexpression experiments confirmed the improvement effect of AST on pyroptosis induced by GSDMD-N pore formation. Concurrently, AST exhibited potent antioxidant effects against alcohol-induced cardiolipin peroxidation, suggesting dual therapeutic modalities targeting both pyroptotic execution and mitochondrial membrane stabilization. Collectively, our findings identify AST as a promising candidate for therapeutic interventions against alcoholic inflammatory liver injury through coordinated modulation of the pyroptosis-mitochondrial homeostasis crosstalk, offering novel insights into nutritional intervention strategies for alcohol-related liver pathologies.
{"title":"Targeting the Pyroptosis-Mitochondrial Homeostasis Crosstalk: Astaxanthin Attenuates Alcohol-Induced Inflammatory Liver Injury via Inhibition of cGAS-STING Signaling.","authors":"Shousheng Liu, Haiping Zhang, Ronghuan Du, Xi Gao, Tianren Wang, Wenping Qin, Dan Sun, Hui Liang, Peng Wang","doi":"10.1021/acs.jafc.5c12678","DOIUrl":"10.1021/acs.jafc.5c12678","url":null,"abstract":"<p><p>Emerging research evidence has established the critical role of inflammatory cascades in the development and progression of alcoholic liver injury with hepatocellular death serving as a principal driver. Notably, the dysregulated interplay between mitochondrial homeostasis and pyroptosis is primarily responsible for the alcohol-induced aberrant liver immune microenvironment, characterized by nonresolving inflammation. Given the considerable limitations in the current treatment for alcoholic steatohepatitis (ASH), it is imperative to explore targeted nutritional interventions as alternative therapies. Here, we established an ASH model with C57BL/6J mice and demonstrated that astaxanthin (AST) administration significantly protected against alcohol-induced inflammatory liver injury through dual mechanisms: 1) suppression of hepatocyte pyroptosis by inhibiting the NLRP-3/Caspase/GSDMD signaling axis and 2) mitigation of mitochondrial dysfunction evidenced by structural membrane integrity restoration and redox homeostasis rebalancing. Mechanistically, AST intervention impeded the cytoplasmic translocation of mitochondrial DNA (mtDNA), thereby concurrently inhibiting AIM2 inflammasome activation and cGAS/STING signaling. In vitro studies further confirmed dose-dependent attenuation of alcohol-induced hepatotoxicity by AST, marked by reduced pyroptotic cell death and diminished proinflammatory cytokine secretion (IL-1β, IL-18). Mitochondrial protection was further evidenced through restored membrane potential (ΔΨm), decreased cytoplasmic Cytochrome <i>C</i> release, and attenuated mtDNA leakage. Moreover, we identified a novel molecular interaction, wherein AST competitively binds lipid-binding motifs within the β1-β2 loop of the GSDMD-N-terminal domain, potentially interfering with pyroptotic pore formation. Further overexpression experiments confirmed the improvement effect of AST on pyroptosis induced by GSDMD-N pore formation. Concurrently, AST exhibited potent antioxidant effects against alcohol-induced cardiolipin peroxidation, suggesting dual therapeutic modalities targeting both pyroptotic execution and mitochondrial membrane stabilization. Collectively, our findings identify AST as a promising candidate for therapeutic interventions against alcoholic inflammatory liver injury through coordinated modulation of the pyroptosis-mitochondrial homeostasis crosstalk, offering novel insights into nutritional intervention strategies for alcohol-related liver pathologies.</p>","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":" ","pages":""},"PeriodicalIF":6.2,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146123132","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-06DOI: 10.1021/acs.jafc.5c12464
Chenchen Nan, Xiaolong Guo, Jiale Cheng, Xin Li, Jun Feng, Jufang Wang, Hongxin Fu
Sabinene, a high-value monoterpene with broad industrial applications, is facing growing demand. To enable sustainable and cost-efficient production, we engineered the yeast Pichia pastoris for sabinene production from methanol. Through systematic metabolic engineering, we implemented a multipronged strategy to optimize sabinene biosynthesis: (1) enhancing precursor supply and synthase activity via fusion proteins (ERG20WW-tNPPS1 and ERG20WW-t37SabS1 (H561F)), (2) redirecting carbon flux through the phosphoketolase-phosphotransacetylase pathway, and (3) upregulating the mevalonate pathway via overexpression of a truncated HMGR. The engineered strain achieved record-high sabinene titers of 3.24 g/L in shake flasks and 6.38 g/L in a 3-L bioreactor. Notably, this yield surpasses those achieved with conventional sugar-based feedstocks in other microbial hosts, underscoring the potential of methanol as a superior carbon source for terpenoid biosynthesis. This work not only establishes P. pastoris as a promising platform for sabinene production, but also paves the way for methanol-based biomanufacturing of diverse natural products.
{"title":"De Novo Biosynthesis of Sabinene from Methanol by Multiple Engineered Pichia pastoris","authors":"Chenchen Nan, Xiaolong Guo, Jiale Cheng, Xin Li, Jun Feng, Jufang Wang, Hongxin Fu","doi":"10.1021/acs.jafc.5c12464","DOIUrl":"https://doi.org/10.1021/acs.jafc.5c12464","url":null,"abstract":"Sabinene, a high-value monoterpene with broad industrial applications, is facing growing demand. To enable sustainable and cost-efficient production, we engineered the yeast <i>Pichia pastoris</i> for sabinene production from methanol. Through systematic metabolic engineering, we implemented a multipronged strategy to optimize sabinene biosynthesis: (1) enhancing precursor supply and synthase activity via fusion proteins (<i>ERG20</i><sup><i>WW</i></sup>-<i>tNPPS1</i> and <i>ERG20</i><sup><i>WW</i></sup>-<i>t37SabS1</i> (<i>H561F</i>)), (2) redirecting carbon flux through the phosphoketolase-phosphotransacetylase pathway, and (3) upregulating the mevalonate pathway via overexpression of a truncated HMGR. The engineered strain achieved record-high sabinene titers of 3.24 g/L in shake flasks and 6.38 g/L in a 3-L bioreactor. Notably, this yield surpasses those achieved with conventional sugar-based feedstocks in other microbial hosts, underscoring the potential of methanol as a superior carbon source for terpenoid biosynthesis. This work not only establishes <i>P. pastoris</i> as a promising platform for sabinene production, but also paves the way for methanol-based biomanufacturing of diverse natural products.","PeriodicalId":41,"journal":{"name":"Journal of Agricultural and Food Chemistry","volume":"302 1","pages":""},"PeriodicalIF":6.1,"publicationDate":"2026-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146122236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}