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Building up spectral libraries for mapping erythrocytes by hyperspectral dark field microscopy 建立高光谱暗场显微镜测定红细胞的光谱文库
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160133
Marco Conti, R. Scanferlato, M. Louka, A. Sansone, Carla Marzetti, C. Ferreri
BACKGROUND: Red blood cells (RBC) are obtained by non-invasive methods and widely used for diagnostic tests of health status. Hyperspectral Dark Field Microscopy (HDFM) is a promising technique for nanoscale bio imaging and spectral analysis without additional sample preparation. OBJECTIVE: Develop a protocol for human RBC characterization by HDFM, checking the feasibility of a reference spectral library that can image and afford a new comprehensive descriptor of RBC status. METHOD: A step-by-step protocol for HDFM measurement of human RBC was for the first time established using 5 µl of EDTA-treated whole blood from healthy adults (n = 30). Hyperspectral characteristics of solutions/suspensions at biological concentrations of phospholipids, hemoglobin, spectrin, cholesterol and protoporphyrin IX, as the most relevant RBC components, were also determined. RESULTS: A library made of 8 end-member spectra and classification of their spectral distribution carried out by Single Angle Mapper (SAM) were determined, furnishing a comprehensive mapping and descriptor of healthy human RBC. The spectra of single components allowed some of the RBC spectral bands to be attributed. CONCLUSIONS: This work reports for the first time the hyperspectral optical imaging of the human RBC by a library made of 8 scattering spectra, whose spectral signatures are compared with those of the main RBC molecular components. The percent distribution of the spectral end-members was also achieved, thus giving for the first time the HDFM mapping of human healthy RBCs. The protocol developed herein allows the clinical potential of hyperspectral imaging to be developed for the use of RBC mapping in health and disease.
背景:红细胞(RBC)是通过非侵入性方法获得的,广泛用于健康状况的诊断测试。高光谱暗场显微镜(HDFM)是一种很有前途的纳米级生物成像和光谱分析技术,无需额外的样品制备。目的:建立一种人类红细胞HDFM表征方案,检查参考光谱库的可行性,该库可以成像并提供新的红细胞状态综合描述符。方法:采用5µl经edta处理的健康成人全血(n = 30),首次建立了一步一步测定人红细胞HDFM的方案。在生物浓度的磷脂、血红蛋白、光谱蛋白、胆固醇和原卟啉IX作为最相关的红细胞成分时,还测定了溶液/悬浮液的高光谱特性。结果:建立了8个端元光谱文库,并利用单角成像仪(SAM)对其光谱分布进行了分类,为健康人红细胞提供了全面的图谱和描述。单一组分的光谱允许一些RBC光谱带归属。结论:本文首次报道了由8个散射光谱组成的文库对人红细胞进行高光谱成像,并与红细胞主要分子成分的光谱特征进行了比较。光谱末端成员的百分比分布也得到了实现,从而首次给出了人类健康红细胞的HDFM图谱。本文开发的协议允许开发高光谱成像在健康和疾病中使用RBC制图的临床潜力。
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引用次数: 21
The effect of irradiance and integration time in in vivo normal skin Raman measurements assessed by multivariate statistical analysis 通过多元统计分析评估辐照度和积分时间对体内正常皮肤拉曼测量的影响
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160140
A. Elka, Violetta Moulia, P. Spyridonos, N. Kourkoumelis
BACKGROUND: The successful discrimination of the subtle spectral characteristics of human skin in Raman spectra requires optimal acquisition parameters. We explore the translational momentum of Raman spectroscopy towards clinical practice by fine-tuning two basic experimental parameters (irradiance and integration time) of a portable Raman system used in skin measurements. OBJECTIVE: The aim of this study is to construct a generic protocol for recording the optimal Raman signal for in vivo skin measurements. METHODS: In vivo spectra were collected from two individuals of normal Fitzpatrick type III skin type. We assessed two different irradiation setups with three different integration times each by separating the raw signal from the noise using multivariate analysis. RESULTS: Our results showed that under a time threshold no optimal measurement conditions can be achieved. On the other hand, increased laser power and acquisition time do not offer a significant advantage over the selected lower values. Baseline correction is the most critical component for analysing normalized skin Raman spectra. CONCLUSIONS: A simple working protocol based on multivariate statistics offers the relative adjustment of irradiance and signal integration time among other experimental parameters that must be examined for optimal Raman measurements of skin.
背景:在拉曼光谱中成功识别人体皮肤细微的光谱特征需要优化的采集参数。我们通过微调用于皮肤测量的便携式拉曼系统的两个基本实验参数(辐照度和积分时间)来探索拉曼光谱在临床实践中的平移动量。目的:本研究的目的是构建一种用于记录体内皮肤测量的最佳拉曼信号的通用方案。方法:采集2例正常Fitzpatrick III型皮肤的体内光谱。我们通过使用多变量分析将原始信号与噪声分离,评估了两种不同的辐照设置和三种不同的积分时间。结果:在一定的时间阈值下,不存在最优的测量条件。另一方面,增加的激光功率和采集时间并不比选择的较低的值提供显著的优势。基线校正是分析归一化皮肤拉曼光谱最关键的组成部分。结论:基于多元统计的简单工作方案提供了辐照度和信号整合时间等实验参数的相对调整,这些参数必须用于皮肤的最佳拉曼测量。
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引用次数: 2
A dual-modal optical system combining depth-sensitive laser induced fluorescence (LIF) spectroscopy and optical coherence tomography (OCT) for analyzing layered biological tissue 一种结合深度敏感激光诱导荧光(LIF)光谱和光学相干断层扫描(OCT)的双峰光学系统,用于分析层状生物组织
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160147
K. M. Khan, Ragesh Kumar, Hemant Krishna, K. D. Rao, S. Majumder
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引用次数: 4
Design and first applications of a flexible Raman micro-spectroscopic system for biological imaging 生物成像柔性拉曼微光谱系统的设计和首次应用
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160141
R. Kiselev, I. Schie, S. Aškrabić, C. Krafft, J. Popp
Typical commercial Raman micro-spectroscopic systems do not offer much flexibility to the end user, thus limiting potential research applications. We present a design of a simple, highly flexible and portable confocal Raman microscope with a detailed list of parts. The system can perform spectral acquisition in different modes: single-point spectroscopy, hyperspectral point mapping or hyperspectral line mapping. Moreover, the microscope can be easily converted between inverted and upright configurations, which can be beneficial for specific situations. Fiber coupling enables to connect various lasers for excitation and spectrometer/CCD combinations for signal detection. The performance of the instrument is demonstrated via Raman spectroscopy at 785 nm excitation wavelength, single point mapping of pancreatic cancer cells placed onto a quartz substrate and line mapping of polystyrene beads.
典型的商用拉曼微光谱系统不能为最终用户提供很大的灵活性,从而限制了潜在的研究应用。我们提出了一种简单,高度灵活的便携式共聚焦拉曼显微镜的设计,并给出了详细的零件清单。该系统可以在不同的模式下进行光谱采集:单点光谱、高光谱点测绘或高光谱线测绘。此外,显微镜可以很容易地转换之间倒置和直立配置,这可以有利于具体情况。光纤耦合能够连接各种激光器用于激励和光谱仪/CCD组合用于信号检测。仪器的性能通过785 nm激发波长的拉曼光谱,放置在石英衬底上的胰腺癌细胞的单点测绘和聚苯乙烯珠的线测绘来证明。
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引用次数: 23
Cholesterol: An evergreen molecule in biology 胆固醇:生物学中的常绿分子
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160159
G. Kumar, A. Chattopadhyay
Cholesterol, an essential component of higher eukaryotic membranes, was discovered more than two centuries ago. The development and progress of cholesterol research in the last 200 years has been truly fascinating, with elements of surprise, serendipity and intrigue. In this review, we trace this journey the way we see it, and follow it up with the role of membrane cholesterol in crucial areas of contemporary research (transbilayer domains, regulation of GPCR function and role in the entry of intracellular pathogens into host cells), with considerable footprint from our work. We believe that cholesterol will continue to surprise and fascinate future researchers, thereby justifying its evergreen nature.
胆固醇是高级真核生物膜的重要组成部分,早在两个多世纪前就被发现了。在过去的200年里,胆固醇研究的发展和进步确实令人着迷,其中充满了惊喜、意外和阴谋。在这篇综述中,我们追溯了我们所看到的这段旅程,并在当代研究的关键领域(跨双层结构域,GPCR功能的调节和细胞内病原体进入宿主细胞中的作用)中追踪了膜胆固醇的作用,并从我们的工作中获得了相当大的足迹。我们相信,胆固醇将继续让未来的研究人员感到惊讶和着迷,从而证明它的常青性是正确的。
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引用次数: 15
The early development and application of FTIR difference spectroscopy to membrane proteins: A personal perspective FTIR差分光谱在膜蛋白上的早期发展和应用:个人观点
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160148
K. Rothschild
Membrane proteins facilitate some of the most important cellular processes including energy conversion, ion trans- port and signal transduction. While conventional infrared absorption provides information about membrane protein secondary structure, a major challenge is to develop a dynamic picture of the functioning of membrane proteins at the molecular level. The introduction of FTIR difference spectroscopy around 1980 to study structural changes in membrane proteins along with a number of associated techniques including protein isotope labeling, site-directed mutagenesis, polarization dichroism, atten- uated total reflection and time-resolved spectroscopy have led to significant progress towards this goal. It is now possible to routinely detect conformational changes of individual amino acid residues, backbone peptides, binding ligands, chromophores and even internal water molecules under physiological conditions with time-resolution down to nanoseconds. The advent of ultrafast pulsed-IR lasers has pushed this time-resolution down to femtoseconds. The early development of FTIR difference spectroscopy as applied to membrane proteins with special focus on bacteriorhodopsin is reviewed from a personal perspective.
膜蛋白促进一些最重要的细胞过程,包括能量转换,离子转运和信号转导。虽然传统的红外吸收提供了膜蛋白二级结构的信息,但一个主要的挑战是在分子水平上开发膜蛋白功能的动态图像。1980年前后,FTIR差分光谱学的引入,以及蛋白质同位素标记、定点诱变、极化二色性、衰减全反射和时间分辨光谱学等相关技术,使膜蛋白的结构变化研究取得了重大进展。现在可以在生理条件下常规检测单个氨基酸残基、主肽、结合配体、发色团甚至内部水分子的构象变化,时间分辨率可低至纳秒。超快脉冲红外激光器的出现将时间分辨率降低到了飞秒。从个人的角度综述了FTIR差分光谱技术在膜蛋白研究中的早期发展,特别是在细菌视紫红质方面的研究。
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引用次数: 19
Analysis of protein microarrays by FTIR imaging 蛋白质微阵列的FTIR成像分析
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160137
J. D. Meutter, Kheiro-Mouna Derfoufi, E. Goormaghtigh
BACKGROUND: Proteins are sensitive to environmental conditions. Whether they are produced for therapeutic purposes or for fundamental research, the integrity of their structure and post-traductional modifications are key issues. Measuring glycosylation or phosphorylation level as well as their secondary structure most often rely on complex and indirect experiments. Infrared spectroscopy presents a series of advantages related to its multivariate character. There is a lack of high-throughput methods able to analyse these parameters. OBJECTIVE: In this paper we attempted to combine protein microarrays and infrared imaging for high throughput analysis of proteins. METHODS: A protein microarrayer was used to produce protein microarrays on BaF2 slides transparent in the mid-infrared. Spot density was about 25 spots/mm 2 . A 128 × 128 focal plane array infrared detector was used to record images of the protein microarrays. RESULTS: We show that 100 µm diameter spot are easily analyzed. Spots obtained with low protein concentrations, resulting in an average of a single protein monolayer (ca 3 fg/µm 2 for a 66 kDa protein) provided good quality spectra. CONCLUSIONS: Infrared imaging is a label free, high throughput method, able to analyse protein microarrays and to take advantage from the wide information available in the infrared spectra.
背景:蛋白质对环境条件很敏感。无论它们是用于治疗目的还是用于基础研究,其结构的完整性和后传统修饰都是关键问题。测量糖基化或磷酸化水平以及它们的二级结构通常依赖于复杂和间接的实验。红外光谱的多变量特性使其具有一系列的优势。目前还缺乏能够分析这些参数的高通量方法。目的:本文尝试将蛋白质微阵列技术与红外成像技术相结合,用于蛋白质的高通量分析。方法:采用蛋白质微阵列技术在中红外透明的BaF2载玻片上制备蛋白质微阵列。光斑密度约为25点/mm 2。使用128 × 128焦平面阵列红外探测器记录蛋白质微阵列图像。结果:100µm直径的斑点易于分析。低蛋白浓度下获得的斑点,产生平均单个蛋白单层(66 kDa蛋白约3 fg/µm 2),提供了高质量的光谱。结论:红外成像是一种无标签、高通量的方法,能够分析蛋白质微阵列,并利用红外光谱中的广泛信息。
{"title":"Analysis of protein microarrays by FTIR imaging","authors":"J. D. Meutter, Kheiro-Mouna Derfoufi, E. Goormaghtigh","doi":"10.3233/BSI-160137","DOIUrl":"https://doi.org/10.3233/BSI-160137","url":null,"abstract":"BACKGROUND: Proteins are sensitive to environmental conditions. Whether they are produced for therapeutic purposes or for fundamental research, the integrity of their structure and post-traductional modifications are key issues. Measuring glycosylation or phosphorylation level as well as their secondary structure most often rely on complex and indirect experiments. Infrared spectroscopy presents a series of advantages related to its multivariate character. There is a lack of high-throughput methods able to analyse these parameters. OBJECTIVE: In this paper we attempted to combine protein microarrays and infrared imaging for high throughput analysis of proteins. METHODS: A protein microarrayer was used to produce protein microarrays on BaF2 slides transparent in the mid-infrared. Spot density was about 25 spots/mm 2 . A 128 × 128 focal plane array infrared detector was used to record images of the protein microarrays. RESULTS: We show that 100 µm diameter spot are easily analyzed. Spots obtained with low protein concentrations, resulting in an average of a single protein monolayer (ca 3 fg/µm 2 for a 66 kDa protein) provided good quality spectra. CONCLUSIONS: Infrared imaging is a label free, high throughput method, able to analyse protein microarrays and to take advantage from the wide information available in the infrared spectra.","PeriodicalId":44239,"journal":{"name":"Biomedical Spectroscopy and Imaging","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2016-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3233/BSI-160137","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"69856826","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 14
Structural response of genomic DNA from grapevine (Vitis vinifera L.) varieties to microwaves irradiation: A Fourier transform infrared spectroscopy assessment 葡萄品种基因组DNA对微波辐射的结构响应:傅里叶变换红外光谱评估
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160138
C. Tripon, C. Muntean, E. Surducan, I. Bratu, A. Halmagyi, A. Coste
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引用次数: 1
An infrared spectroscopic blood test for non-small cell lung carcinoma and subtyping into pulmonary squamous cell carcinoma or adenocarcinoma 非小细胞肺癌的红外光谱血液测试和肺鳞状细胞癌或腺癌亚型
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160144
J. Ollesch, D. Theegarten, M. Altmayer, K. Darwiche, T. Hager, G. Stamatis, K. Gerwert
BACKGROUND: Lung cancer is the leading cause of death for male and female cancer patients alike. Early diagnosis improves prognosis. A blood test would be a valuable support. OBJECTIVE: Infrared spectroscopy provides a label-free biochemical fingerprint of a sample. A study was conducted on 161 patients with initial cancer suspicion to identify and verify spectral biomarker candidate patterns to detect non-small cell lung carcinoma (NSCLC). METHODS: Blood serum and plasma samples were analysed with an automated FTIR spectroscopic system. Two pattern recognition algorithms and two classifiers were applied. Monte Carlo cross validation was performed with linear discriminant analysis and random forest classification. RESULTS: Marker patterns for the discrimination of cancer from clinically relevant disease control patients were identified in FTIR spectra of blood samples. An accuracy of up to 79% was achieved. Squamous cell and adenocarcinoma patients were separable with an accuracy of 80%. CONCLUSIONS: The study demonstrates the applicability of FTIR spectroscopic blood testing for lung cancer detection. Evidence for cancer subtype discrimination is given. With an improved performance, the method could be developed as a routine diagnostic tool for blood testing detecting NSCLC.
背景:肺癌是男性和女性癌症患者死亡的主要原因。早期诊断可改善预后。验血将是一个有价值的支持。目的:红外光谱技术为样品提供无标记的生化指纹图谱。本研究对161例初步怀疑癌症的患者进行了研究,以鉴定和验证用于检测非小细胞肺癌(NSCLC)的光谱生物标志物候选模式。方法:采用自动FTIR光谱系统对血清和血浆样品进行分析。采用了两种模式识别算法和两种分类器。采用线性判别分析和随机森林分类进行蒙特卡罗交叉验证。结果:在血液样本的FTIR光谱中发现了区分癌症与临床相关疾病对照患者的标记模式。准确度达到79%。鳞状细胞癌和腺癌患者可分离,准确率为80%。结论:本研究证明了FTIR光谱血液检测在肺癌检测中的适用性。给出了癌症亚型区分的证据。随着性能的提高,该方法可作为血液检测检测非小细胞肺癌的常规诊断工具。
{"title":"An infrared spectroscopic blood test for non-small cell lung carcinoma and subtyping into pulmonary squamous cell carcinoma or adenocarcinoma","authors":"J. Ollesch, D. Theegarten, M. Altmayer, K. Darwiche, T. Hager, G. Stamatis, K. Gerwert","doi":"10.3233/BSI-160144","DOIUrl":"https://doi.org/10.3233/BSI-160144","url":null,"abstract":"BACKGROUND: Lung cancer is the leading cause of death for male and female cancer patients alike. Early diagnosis improves prognosis. A blood test would be a valuable support. OBJECTIVE: Infrared spectroscopy provides a label-free biochemical fingerprint of a sample. A study was conducted on 161 patients with initial cancer suspicion to identify and verify spectral biomarker candidate patterns to detect non-small cell lung carcinoma (NSCLC). METHODS: Blood serum and plasma samples were analysed with an automated FTIR spectroscopic system. Two pattern recognition algorithms and two classifiers were applied. Monte Carlo cross validation was performed with linear discriminant analysis and random forest classification. RESULTS: Marker patterns for the discrimination of cancer from clinically relevant disease control patients were identified in FTIR spectra of blood samples. An accuracy of up to 79% was achieved. Squamous cell and adenocarcinoma patients were separable with an accuracy of 80%. CONCLUSIONS: The study demonstrates the applicability of FTIR spectroscopic blood testing for lung cancer detection. Evidence for cancer subtype discrimination is given. With an improved performance, the method could be developed as a routine diagnostic tool for blood testing detecting NSCLC.","PeriodicalId":44239,"journal":{"name":"Biomedical Spectroscopy and Imaging","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2016-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3233/BSI-160144","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"69856592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
Cholesterol and nicotinic acetylcholine receptor: An intimate nanometer-scale spatial relationship spanning the billion year time-scale 胆固醇和尼古丁乙酰胆碱受体:一个亲密的纳米尺度空间关系跨越十亿年的时间尺度
Pub Date : 2016-01-01 DOI: 10.3233/BSI-160158
F. Barrantes
Fil: Barrantes, Francisco Jose. Pontificia Universidad Catolica Argentina "Santa Maria de los Buenos Aires". Instituto de Investigaciones Biomedicas. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Oficina de Coordinacion Administrativa Houssay. Instituto de Investigaciones Biomedicas; Argentina
线程:Barrantes, Francisco Jose。阿根廷教皇天主教大学“布宜诺斯艾利斯的圣玛丽亚”。生物医学研究所。国家科学技术研究委员会。豪赛行政协调办公室。生物医学研究所;阿根廷
{"title":"Cholesterol and nicotinic acetylcholine receptor: An intimate nanometer-scale spatial relationship spanning the billion year time-scale","authors":"F. Barrantes","doi":"10.3233/BSI-160158","DOIUrl":"https://doi.org/10.3233/BSI-160158","url":null,"abstract":"Fil: Barrantes, Francisco Jose. Pontificia Universidad Catolica Argentina \"Santa Maria de los Buenos Aires\". Instituto de Investigaciones Biomedicas. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Oficina de Coordinacion Administrativa Houssay. Instituto de Investigaciones Biomedicas; Argentina","PeriodicalId":44239,"journal":{"name":"Biomedical Spectroscopy and Imaging","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2016-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3233/BSI-160158","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"69856733","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
期刊
Biomedical Spectroscopy and Imaging
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