Abstract Flight loss is a common feature of upland insect assemblages, with recent studies detecting parallel wing reduction events across independent alpine lineages. However, the geographic scale over which such repeated evolution can operate remains unclear. In this study, we use genotyping-by-sequencing to assess the genomic relationships among vestigial-winged and full-winged populations of the widespread New Zealand stonefly Nesoperla fulvescens, to test for repeated wing loss events over small spatial scales. Biogeographic analyses indicate that alpine wing loss in this widespread species is restricted to a single, narrow mountain range. Intriguingly, our coalescent analyses indicate that upland vestigial-winged N. fulvescens populations are not sister to one another, suggesting wings have been lost independently in disjunct populations of this species, over a <30 km scale. Our results suggest that selection against flight above the alpine treeline can drive rapid and repeated adaptation even across narrow spatial scales. We propose that such repetitive processes may represent a far more pervasive feature of alpine insect adaptation than is currently recognized.
{"title":"Repeated Alpine Flight Loss Within the Widespread New Zealand Stonefly Nesoperla fulvescens Hare (Plecoptera: Gripopterygidae)","authors":"G. A. McCulloch, B. Foster, L. Dutoit, J. Waters","doi":"10.1093/isd/ixac027","DOIUrl":"https://doi.org/10.1093/isd/ixac027","url":null,"abstract":"Abstract Flight loss is a common feature of upland insect assemblages, with recent studies detecting parallel wing reduction events across independent alpine lineages. However, the geographic scale over which such repeated evolution can operate remains unclear. In this study, we use genotyping-by-sequencing to assess the genomic relationships among vestigial-winged and full-winged populations of the widespread New Zealand stonefly Nesoperla fulvescens, to test for repeated wing loss events over small spatial scales. Biogeographic analyses indicate that alpine wing loss in this widespread species is restricted to a single, narrow mountain range. Intriguingly, our coalescent analyses indicate that upland vestigial-winged N. fulvescens populations are not sister to one another, suggesting wings have been lost independently in disjunct populations of this species, over a <30 km scale. Our results suggest that selection against flight above the alpine treeline can drive rapid and repeated adaptation even across narrow spatial scales. We propose that such repetitive processes may represent a far more pervasive feature of alpine insect adaptation than is currently recognized.","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":"6 1","pages":"1 - 9"},"PeriodicalIF":3.4,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42863665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Bernardo F Santos, Marissa C. Sandoval, T. Spasojevic, Madalene M. Giannotta, S. Brady
Abstract Biogeographic patterns in the Southern Hemisphere have largely been attributed to vicariant processes, but recent studies have challenged some of the classic examples of this paradigm. The parasitoid wasp subfamily Labeninae has been hypothesized to have a Gondwanan origin, but the lack of divergence dating analysis and the discovery of a putative labenine fossil in Europe pose a challenge to that idea. Here we used a combination of phylogenomics, divergence dating and event-based biogeographical inference to test whether Gondwanan vicariance may explain the distribution patterns of Labeninae. Data from genomic ultraconserved elements were used to infer the phylogeny of Labeninae with 54 species from 9 genera and a broad selection of 99 outgroup taxa. Total-evidence divergence dating places the origin of Labeninae at around 146 mya, which is consistent with a Gondwanan origin but predates the full separation of Africa and South America. The results suggest a path for biotic exchange between South America and Australia potentially through Antarctica, until at least 49 million years ago. Total-evidence analysis places the fossil Trigonator macrocheirus Spasojevic et al. firmly inside crown-group Labeninae, suggesting that labenine distribution range at some point during the Eocene surpassed the boundaries of Gondwanaland. Biogeographic inference also indicates that North American groups represent more recent range expansions that nonetheless occurred before the formation of the Isthmus of Panama land bridge. These conclusions point to a more complex scenario than previously expected for Labeninae biogeography.
{"title":"A Parasitoid Puzzle: Phylogenomics, Total-evidence Dating, and the Role of Gondwanan Vicariance in the Diversification of Labeninae (Hymenoptera, Ichneumonidae)","authors":"Bernardo F Santos, Marissa C. Sandoval, T. Spasojevic, Madalene M. Giannotta, S. Brady","doi":"10.1093/isd/ixac015","DOIUrl":"https://doi.org/10.1093/isd/ixac015","url":null,"abstract":"Abstract Biogeographic patterns in the Southern Hemisphere have largely been attributed to vicariant processes, but recent studies have challenged some of the classic examples of this paradigm. The parasitoid wasp subfamily Labeninae has been hypothesized to have a Gondwanan origin, but the lack of divergence dating analysis and the discovery of a putative labenine fossil in Europe pose a challenge to that idea. Here we used a combination of phylogenomics, divergence dating and event-based biogeographical inference to test whether Gondwanan vicariance may explain the distribution patterns of Labeninae. Data from genomic ultraconserved elements were used to infer the phylogeny of Labeninae with 54 species from 9 genera and a broad selection of 99 outgroup taxa. Total-evidence divergence dating places the origin of Labeninae at around 146 mya, which is consistent with a Gondwanan origin but predates the full separation of Africa and South America. The results suggest a path for biotic exchange between South America and Australia potentially through Antarctica, until at least 49 million years ago. Total-evidence analysis places the fossil Trigonator macrocheirus Spasojevic et al. firmly inside crown-group Labeninae, suggesting that labenine distribution range at some point during the Eocene surpassed the boundaries of Gondwanaland. Biogeographic inference also indicates that North American groups represent more recent range expansions that nonetheless occurred before the formation of the Isthmus of Panama land bridge. These conclusions point to a more complex scenario than previously expected for Labeninae biogeography.","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":" ","pages":"1 - 13"},"PeriodicalIF":3.4,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43053619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
C. Dietrich, D. Dmitriev, D. Takiya, M. Thomas, M. Webb, J. Zahniser, Yalin Zhang
Recently discovered amber-preserved fossil Cicadellidae exhibit combinations of morphological traits not observed in the modern fauna and have the potential to shed new light on the evolution of this highly diverse family. To place the fossils explicitly within a phylogenetic context, representatives of five extinct genera from Cretaceous Myanmar amber, and one from Eocene Baltic amber were incorporated into a matrix comprising 229 discrete morphological characters and representatives of all modern subfamilies. Phylogenetic analyses yielded well resolved and largely congruent estimates that support the monophyly of most previously recognized cicadellid subfamilies and indicate that the treehoppers are derived from a lineage of Cicadellidae. Instability in the morphology-based phylogenies is mainly confined to deep internal splits that received low branch support in one or more analyses and also were not consistently resolved by recent phylogenomic analyses. Placement of fossil taxa is mostly stable across analyses. Three new Cretaceous leafhopper genera, Burmotettix gen. nov., Kachinella gen nov., and Viraktamathus gen. nov., consistently form a monophyletic group distinct from extant leafhopper subfamilies and are placed in Burmotettiginae subfam. nov. Extinct Cretaceous fossils previously placed in Ledrinae and Signoretiinae are recovered as sister to modern representatives of these groups. Eomegophthalmus Dietrich and Gonçalves from Baltic amber consistently groups with a lineage comprising treehoppers, Megophthalminae, Ulopinae, and Eurymelinae but its position is unstable. Overall, the morphology-based phylogenetic estimates agree with recent phylogenies based on molecular data alone suggesting that morphological traits recently used to diagnose subfamilies are generally informative of phylogenetic relationships within this group.
最近发现的琥珀保存的蝉科化石展示了在现代动物群中未观察到的形态特征组合，并有可能为这个高度多样化的家族的进化提供新的线索。为了明确地将化石置于系统发育背景中，我们将白垩纪缅甸琥珀的5个已灭绝属的代表和始新世波罗的海琥珀的1个代表合并到一个包含229个离散形态特征和所有现代亚科代表的矩阵中。系统发育分析得到了一致的结果，支持了大多数先前确认的蝉亚科的单系性，并表明树跳虫来自蝉科的一个谱系。基于形态的系统发生的不稳定性主要局限于深层内部分裂，在一个或多个分析中得到低分支支持，并且最近的系统基因组分析也没有一致地解决。在整个分析中，化石分类群的位置基本上是稳定的。白垩纪三个新的叶蝉属(Burmotettix gen. nov.)、Kachinella gen. nov.和Viraktamathus gen. nov.)一致形成了一个与现存叶蝉亚科不同的单系类群，并被归入Burmotettiginae亚科。11 .在Ledrinae和Signoretiinae中发现的灭绝的白垩纪化石是这些类群的现代代表的姐妹。来自波罗的海琥珀的Eomegophthalmus Dietrich和gonalves始终与树跳、大眼跳科、乌洛皮纳科和Eurymelinae组成的谱系类群，但其位置不稳定。总的来说，基于形态学的系统发育估计与最近仅基于分子数据的系统发育一致，这表明最近用于诊断亚家族的形态学特征通常可以提供该群体内系统发育关系的信息。
{"title":"Morphology-based Phylogenetic Analysis of Membracoidea (Hemiptera: Cicadomorpha) With Placement of Fossil Taxa and Description of a New Subfamily","authors":"C. Dietrich, D. Dmitriev, D. Takiya, M. Thomas, M. Webb, J. Zahniser, Yalin Zhang","doi":"10.1093/isd/ixac021","DOIUrl":"https://doi.org/10.1093/isd/ixac021","url":null,"abstract":"\u0000 Recently discovered amber-preserved fossil Cicadellidae exhibit combinations of morphological traits not observed in the modern fauna and have the potential to shed new light on the evolution of this highly diverse family. To place the fossils explicitly within a phylogenetic context, representatives of five extinct genera from Cretaceous Myanmar amber, and one from Eocene Baltic amber were incorporated into a matrix comprising 229 discrete morphological characters and representatives of all modern subfamilies. Phylogenetic analyses yielded well resolved and largely congruent estimates that support the monophyly of most previously recognized cicadellid subfamilies and indicate that the treehoppers are derived from a lineage of Cicadellidae. Instability in the morphology-based phylogenies is mainly confined to deep internal splits that received low branch support in one or more analyses and also were not consistently resolved by recent phylogenomic analyses. Placement of fossil taxa is mostly stable across analyses. Three new Cretaceous leafhopper genera, Burmotettix gen. nov., Kachinella gen nov., and Viraktamathus gen. nov., consistently form a monophyletic group distinct from extant leafhopper subfamilies and are placed in Burmotettiginae subfam. nov. Extinct Cretaceous fossils previously placed in Ledrinae and Signoretiinae are recovered as sister to modern representatives of these groups. Eomegophthalmus Dietrich and Gonçalves from Baltic amber consistently groups with a lineage comprising treehoppers, Megophthalminae, Ulopinae, and Eurymelinae but its position is unstable. Overall, the morphology-based phylogenetic estimates agree with recent phylogenies based on molecular data alone suggesting that morphological traits recently used to diagnose subfamilies are generally informative of phylogenetic relationships within this group.","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41630916","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Richter, B. Boudinot, Shûhei Yamamoto, Julian Katzke, R. Beutel
Abstract The fossil record allows a unique glimpse into the evolutionary history of organisms living on Earth today. We discovered a specimen of the stem group ant †Gerontoformica gracilis (Barden and Grimaldi, 2014) in Kachin amber with near-complete preservation of internal head structures, which we document employing µ-computed-tomography-based 3D reconstructions. We compare †Gerontoformica to four outgroup taxa and four extant ant species, employing parsimony and Bayesian ancestral state reconstruction to identify morphological differences and similarities between stem and crown ants and thus improve our understanding of ant evolution through the lens of head anatomy. Of 149 morphological characters, 87 are new in this study, and almost all applicable to the fossil. †Gerontoformica gracilis shares shortened dorsal tentorial arms, basally angled pedicels, and the pharyngeal gland as apomorphies with other total clade Formicidae. Retained plesiomorphies include mandible shape and features of the prepharynx. Implications of the reconstructed transitions especially for the ant groundplan are critically discussed based on our restricted taxon sampling, emphasizing the crucial information derived from internal anatomy which is applied to deep time for the first time. Based on the falcate mandible in †Gerontoformica and other Aculeata, we present hypotheses for how the shovel-shaped mandibles in crown Formicidae could have evolved. Our results support the notion of †Gerontoformica as ‘generalized’ above-ground predator missing crucial novelties of crown ants which may have helped the latter survive the end-Cretaceous extinction. Our study is an important step for anatomical research on Cretaceous insects and a glimpse into the early evolution of ant heads. Graphical Abstract
{"title":"The First Reconstruction of the Head Anatomy of a Cretaceous Insect, †Gerontoformica gracilis (Hymenoptera: Formicidae), and the Early Evolution of Ants","authors":"A. Richter, B. Boudinot, Shûhei Yamamoto, Julian Katzke, R. Beutel","doi":"10.1093/isd/ixac013","DOIUrl":"https://doi.org/10.1093/isd/ixac013","url":null,"abstract":"Abstract The fossil record allows a unique glimpse into the evolutionary history of organisms living on Earth today. We discovered a specimen of the stem group ant †Gerontoformica gracilis (Barden and Grimaldi, 2014) in Kachin amber with near-complete preservation of internal head structures, which we document employing µ-computed-tomography-based 3D reconstructions. We compare †Gerontoformica to four outgroup taxa and four extant ant species, employing parsimony and Bayesian ancestral state reconstruction to identify morphological differences and similarities between stem and crown ants and thus improve our understanding of ant evolution through the lens of head anatomy. Of 149 morphological characters, 87 are new in this study, and almost all applicable to the fossil. †Gerontoformica gracilis shares shortened dorsal tentorial arms, basally angled pedicels, and the pharyngeal gland as apomorphies with other total clade Formicidae. Retained plesiomorphies include mandible shape and features of the prepharynx. Implications of the reconstructed transitions especially for the ant groundplan are critically discussed based on our restricted taxon sampling, emphasizing the crucial information derived from internal anatomy which is applied to deep time for the first time. Based on the falcate mandible in †Gerontoformica and other Aculeata, we present hypotheses for how the shovel-shaped mandibles in crown Formicidae could have evolved. Our results support the notion of †Gerontoformica as ‘generalized’ above-ground predator missing crucial novelties of crown ants which may have helped the latter survive the end-Cretaceous extinction. Our study is an important step for anatomical research on Cretaceous insects and a glimpse into the early evolution of ant heads. Graphical Abstract","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":"6 1","pages":"1 - 80"},"PeriodicalIF":3.4,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45860757","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Guilherme H F Azevedo, T. Bougie, Martín E Carboni, M. Hedin, M. Ramírez
Abstract Traits that independently evolve many times are important for testing hypotheses about correlated evolution and understanding the forces shaping biodiversity. However, population genetics processes can cause hemiplasies (traits determined by genes whose topologies do not match the species tree), leading to a false impression of convergence (homoplasy) and potentially misleading inferences of correlated evolution. Discerning between homoplasies and hemiplasies can be important in cases of rapid radiations and clades with many gene tree incongruences. Here, focusing on two-clawed spiders (Dionycha) and close relatives, we evaluate if the observed distribution of characters related to a web-less lifestyle could be better explained as synapomorphies, homoplasies, or hemiplasies. We find that, although there are several convergences, hemiplasies are also sometimes probable. We discuss how these hemiplasies could affect inferences about correlation and causal relationship of traits. Understanding when and where in the tree of life hemiplasy could have happened is important, preventing false inference of convergent evolution. Furthermore, this understanding can provide alternative hypotheses that can be tested with independent data. Using traits related to the climbing ability of spiders we show that, when hemiplasy is unlikely, adequate model testing can be used to better understand correlated evolution, and propose hypotheses to be tested using controlled behavioral and mechanical experiments. Graphical Abstract
{"title":"Convergence, Hemiplasy, and Correlated Evolution Impact Morphological Diversity Related to a Web-Less Lifestyle in the Two-Clawed Spiders","authors":"Guilherme H F Azevedo, T. Bougie, Martín E Carboni, M. Hedin, M. Ramírez","doi":"10.1093/isd/ixac020","DOIUrl":"https://doi.org/10.1093/isd/ixac020","url":null,"abstract":"Abstract Traits that independently evolve many times are important for testing hypotheses about correlated evolution and understanding the forces shaping biodiversity. However, population genetics processes can cause hemiplasies (traits determined by genes whose topologies do not match the species tree), leading to a false impression of convergence (homoplasy) and potentially misleading inferences of correlated evolution. Discerning between homoplasies and hemiplasies can be important in cases of rapid radiations and clades with many gene tree incongruences. Here, focusing on two-clawed spiders (Dionycha) and close relatives, we evaluate if the observed distribution of characters related to a web-less lifestyle could be better explained as synapomorphies, homoplasies, or hemiplasies. We find that, although there are several convergences, hemiplasies are also sometimes probable. We discuss how these hemiplasies could affect inferences about correlation and causal relationship of traits. Understanding when and where in the tree of life hemiplasy could have happened is important, preventing false inference of convergent evolution. Furthermore, this understanding can provide alternative hypotheses that can be tested with independent data. Using traits related to the climbing ability of spiders we show that, when hemiplasy is unlikely, adequate model testing can be used to better understand correlated evolution, and propose hypotheses to be tested using controlled behavioral and mechanical experiments. Graphical Abstract","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":"6 1","pages":"1 - 14"},"PeriodicalIF":3.4,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42695824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Lycidae genera have seldom been tested with phylogenetic analyses. Therefore, we assembled genomic data to estimate the phylogenetic backbone of the porrostomines, one of Metriorrhynchina’s major clades. Further, mtDNA and morphology were employed to assign 352 analyzed species to genera. We present evidence for the paraphyly of Metriorrhynchus and terminal position of Porrostoma, revise the generic classification, and describe eight genera: Maraiakoreus gen. nov., Kuarhynchus gen. nov., Riedelrhynchus gen. nov., Bundikanus gen. nov., Yamarhynchus gen. nov., Bekorhynchus gen. nov., Sundarhynchus gen. nov., and Isuarhynchus gen. nov. We synonymize Stadenus Waterhouse, 1879, syn. nov., Metriorrhynchoides Kleine, 1923, syn. nov., and Oriomum Bocak, 1999a, syn. nov., to Porrostoma Castelnau, 1838. Next, we propose 75 new combinations and four new species: Bundikanus styskalai sp. nov., Kuarhynchus sisrangensis sp. nov., Maraiakoreus argenteus sp. nov., and Yamarhynchus sinopassensis sp. nov. We identified repeated origins of several external morphological traits earlier used to delimitate genera. Therefore, we prefer concordant evidence from the densely sampled mitochondrial phylogenies and male genitalia. The analyses identify high phylogenetic diversity and species richness in New Guinea, much lower phylogenetic diversity of the Australian continental fauna, and the limited permeability of the Wallacea that resulted in a single porrostomine genus in Asia. We point to the common acceptance of paraphyletic and polyphyletic taxa in the current classification. As a result, taxonomy has not provided expected support for any state-of-the-art evolutionary and zoogeographic studies. The phylogeny, species inventory, and classification of porrostomines set the basis for future evolutionary and zoogeographical studies.
{"title":"How Do Genomic, Mitochondrial, and Morphological Data Contribute to the Linnean Classification of the Porrostomine Net-Winged Beetles (Coleoptera, Lycidae)?","authors":"Dominik Kusy, Michal Motyka, R. Bílková, L. Bocak","doi":"10.1093/isd/ixac023","DOIUrl":"https://doi.org/10.1093/isd/ixac023","url":null,"abstract":"\u0000 The Lycidae genera have seldom been tested with phylogenetic analyses. Therefore, we assembled genomic data to estimate the phylogenetic backbone of the porrostomines, one of Metriorrhynchina’s major clades. Further, mtDNA and morphology were employed to assign 352 analyzed species to genera. We present evidence for the paraphyly of Metriorrhynchus and terminal position of Porrostoma, revise the generic classification, and describe eight genera: Maraiakoreus gen. nov., Kuarhynchus gen. nov., Riedelrhynchus gen. nov., Bundikanus gen. nov., Yamarhynchus gen. nov., Bekorhynchus gen. nov., Sundarhynchus gen. nov., and Isuarhynchus gen. nov. We synonymize Stadenus Waterhouse, 1879, syn. nov., Metriorrhynchoides Kleine, 1923, syn. nov., and Oriomum Bocak, 1999a, syn. nov., to Porrostoma Castelnau, 1838. Next, we propose 75 new combinations and four new species: Bundikanus styskalai sp. nov., Kuarhynchus sisrangensis sp. nov., Maraiakoreus argenteus sp. nov., and Yamarhynchus sinopassensis sp. nov. We identified repeated origins of several external morphological traits earlier used to delimitate genera. Therefore, we prefer concordant evidence from the densely sampled mitochondrial phylogenies and male genitalia. The analyses identify high phylogenetic diversity and species richness in New Guinea, much lower phylogenetic diversity of the Australian continental fauna, and the limited permeability of the Wallacea that resulted in a single porrostomine genus in Asia. We point to the common acceptance of paraphyletic and polyphyletic taxa in the current classification. As a result, taxonomy has not provided expected support for any state-of-the-art evolutionary and zoogeographic studies. The phylogeny, species inventory, and classification of porrostomines set the basis for future evolutionary and zoogeographical studies.","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42860441","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sam D. Heraghty, Sarthok Rasique Rahman, J. Jackson, Jeffrey D. Lozier
Abstract Broadly distributed species experience divergent abiotic conditions across their ranges that may drive local adaptation. Montane systems where populations are distributed across both latitudinal and elevational gradients are especially likely to produce local adaptation due to spatial variation in multiple abiotic factors, including temperature, oxygen availability, and air density. We use whole-genome resequencing to evaluate the landscape genomics of Bombus vancouverensis Cresson (Hymenoptera: Apidae), a common montane bumble bee that is distributed throughout the western part of North America. Combined statistical approaches revealed several large windows of outlier SNPs with unusual levels of differentiation across the region and indicated that isothermality and elevation were the environmental features most strongly associated with these variants. Genes found within these regions had diverse biological functions, but included neuromuscular function, ion homeostasis, oxidative stress, and hypoxia that could be associated with tolerance of temperature, desiccation, or high elevation conditions.The whole-genome sequencing approach revealed outliers occurred in genome regions with elevated linkage disequilibrium, elevated mean FST, and low intrapopulation nucleotide diversity. Other kinds of structural variations were not widely associated with environmental predictors but did broadly match geographic separation. Results are consistent with other studies suggesting that regions of low recombination may harbor adaptive variation in bumble bees within as well as between species and refine our understanding of candidate genes that could be further investigated as possible targets of selection across the B. vancouverensis range.
{"title":"Whole Genome Sequencing Reveals the Structure of Environment-Associated Divergence in a Broadly Distributed Montane Bumble Bee, Bombus vancouverensis","authors":"Sam D. Heraghty, Sarthok Rasique Rahman, J. Jackson, Jeffrey D. Lozier","doi":"10.1093/isd/ixac025","DOIUrl":"https://doi.org/10.1093/isd/ixac025","url":null,"abstract":"Abstract Broadly distributed species experience divergent abiotic conditions across their ranges that may drive local adaptation. Montane systems where populations are distributed across both latitudinal and elevational gradients are especially likely to produce local adaptation due to spatial variation in multiple abiotic factors, including temperature, oxygen availability, and air density. We use whole-genome resequencing to evaluate the landscape genomics of Bombus vancouverensis Cresson (Hymenoptera: Apidae), a common montane bumble bee that is distributed throughout the western part of North America. Combined statistical approaches revealed several large windows of outlier SNPs with unusual levels of differentiation across the region and indicated that isothermality and elevation were the environmental features most strongly associated with these variants. Genes found within these regions had diverse biological functions, but included neuromuscular function, ion homeostasis, oxidative stress, and hypoxia that could be associated with tolerance of temperature, desiccation, or high elevation conditions.The whole-genome sequencing approach revealed outliers occurred in genome regions with elevated linkage disequilibrium, elevated mean FST, and low intrapopulation nucleotide diversity. Other kinds of structural variations were not widely associated with environmental predictors but did broadly match geographic separation. Results are consistent with other studies suggesting that regions of low recombination may harbor adaptive variation in bumble bees within as well as between species and refine our understanding of candidate genes that could be further investigated as possible targets of selection across the B. vancouverensis range.","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":"6 1","pages":"1 - 17"},"PeriodicalIF":3.4,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47257105","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
I. Klečková, J. Klečka, Z. Fric, M. Česánek, L. Dutoit, L. Pellissier, Pável Matos‐Maraví
Abstract The diversification of alpine species has been modulated by their climatic niches interacting with changing climatic conditions. The relative roles of climatic niche conservatism promoting geographical speciation and of climatic niche diversification are poorly understood in diverse temperate groups. Here, we investigate the climatic niche evolution in a species rich butterfly genus, Erebia (Dalman, 1816). This Holarctic cold-dwelling genus reaches the highest diversity in European mountains. We generated a nearly complete molecular phylogeny and modeled the climatic niche evolution using geo-referenced occurrence records. We reconstructed the evolution of the climatic niche and tested how the species' climatic niche width changes across the occupied climate gradient and compared two main Erebia clades, the European and the Asian clade. We further explored climatic niche overlaps among species. Our analyses revealed that the evolution of Erebia has been shaped by climatic niche conservatism, supported by a strong phylogenetic signal and niche overlap in sister species, likely promoting allopatric speciation. The European and the Asian clades evolved their climatic niches toward different local optima. In addition, species in the European clade have narrower niches compared to the Asian clade. Contrasts among the clades may be related to regional climate differences, with lower climate seasonality in Europe compared to Central Asia favoring the evolution of narrower niches. Further, adaptive divergence could appear in other traits, such as habitat use, which can be reflected by narrower climatic niches detected in the European clade. Our study extends knowledge about the complexity of evolutionary drivers in temperate insects.
{"title":"Climatic Niche Conservatism and Ecological Diversification in the Holarctic Cold-Dwelling Butterfly Genus Erebia","authors":"I. Klečková, J. Klečka, Z. Fric, M. Česánek, L. Dutoit, L. Pellissier, Pável Matos‐Maraví","doi":"10.1093/isd/ixad002","DOIUrl":"https://doi.org/10.1093/isd/ixad002","url":null,"abstract":"Abstract The diversification of alpine species has been modulated by their climatic niches interacting with changing climatic conditions. The relative roles of climatic niche conservatism promoting geographical speciation and of climatic niche diversification are poorly understood in diverse temperate groups. Here, we investigate the climatic niche evolution in a species rich butterfly genus, Erebia (Dalman, 1816). This Holarctic cold-dwelling genus reaches the highest diversity in European mountains. We generated a nearly complete molecular phylogeny and modeled the climatic niche evolution using geo-referenced occurrence records. We reconstructed the evolution of the climatic niche and tested how the species' climatic niche width changes across the occupied climate gradient and compared two main Erebia clades, the European and the Asian clade. We further explored climatic niche overlaps among species. Our analyses revealed that the evolution of Erebia has been shaped by climatic niche conservatism, supported by a strong phylogenetic signal and niche overlap in sister species, likely promoting allopatric speciation. The European and the Asian clades evolved their climatic niches toward different local optima. In addition, species in the European clade have narrower niches compared to the Asian clade. Contrasts among the clades may be related to regional climate differences, with lower climate seasonality in Europe compared to Central Asia favoring the evolution of narrower niches. Further, adaptive divergence could appear in other traits, such as habitat use, which can be reflected by narrower climatic niches detected in the European clade. Our study extends knowledge about the complexity of evolutionary drivers in temperate insects.","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":"7 1","pages":"1 - 13"},"PeriodicalIF":3.4,"publicationDate":"2022-08-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47433012","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Aaron M. Goodman, Jonah J Allen, Jinna Brim, Alessa Codella, Brittney Hahn, Hassan Jojo, Zoila BondocGawa Mafla-Mills, Salka’Tuwa Bondoc Mafla, Agnes Oduro, Megan M. Wilson, J. Ware
Abstract The advent of community-science databases in conjunction with museum specimen locality information has exponentially increased the power and accuracy of ecological niche modeling (ENM). Increased occurrence data has provided colossal potential to understand the distributions of lesser known or endangered species, including arthropods. Although niche modeling of termites has been conducted in the context of invasive and pest species, few studies have been performed to understand the distribution of basal termite genera. Using specimen records from the American Museum of Natural History (AMNH) as well as locality databases, we generated ecological niche models for 12 basal termite species belonging to six genera and three families. We extracted environmental data from the Worldclim 19 bioclimatic dataset v2, along with SoilGrids datasets and generated models using MaxEnt. We chose Optimal models based on partial Receiving Operating characteristic (pROC) and omission rate criterion and determined variable importance using permutation analysis. We also calculated response curves to understand changes in suitability with changes in environmental variables. Optimal models for our 12 termite species ranged in complexity, but no discernible pattern was noted among genera, families, or geographic range. Permutation analysis revealed that habitat suitability is affected predominantly by seasonal or monthly temperature and precipitation variation. Our findings not only highlight the efficacy of largely community-science and museum-based datasets, but our models provide a baseline for predictions of future abundance of lesser-known arthropod species in the face of habitat destruction and climate change. Graphical Abstract
{"title":"Utilization of Community Science Data to Explore Habitat Suitability of Basal Termite Genera","authors":"Aaron M. Goodman, Jonah J Allen, Jinna Brim, Alessa Codella, Brittney Hahn, Hassan Jojo, Zoila BondocGawa Mafla-Mills, Salka’Tuwa Bondoc Mafla, Agnes Oduro, Megan M. Wilson, J. Ware","doi":"10.1093/isd/ixac019","DOIUrl":"https://doi.org/10.1093/isd/ixac019","url":null,"abstract":"Abstract The advent of community-science databases in conjunction with museum specimen locality information has exponentially increased the power and accuracy of ecological niche modeling (ENM). Increased occurrence data has provided colossal potential to understand the distributions of lesser known or endangered species, including arthropods. Although niche modeling of termites has been conducted in the context of invasive and pest species, few studies have been performed to understand the distribution of basal termite genera. Using specimen records from the American Museum of Natural History (AMNH) as well as locality databases, we generated ecological niche models for 12 basal termite species belonging to six genera and three families. We extracted environmental data from the Worldclim 19 bioclimatic dataset v2, along with SoilGrids datasets and generated models using MaxEnt. We chose Optimal models based on partial Receiving Operating characteristic (pROC) and omission rate criterion and determined variable importance using permutation analysis. We also calculated response curves to understand changes in suitability with changes in environmental variables. Optimal models for our 12 termite species ranged in complexity, but no discernible pattern was noted among genera, families, or geographic range. Permutation analysis revealed that habitat suitability is affected predominantly by seasonal or monthly temperature and precipitation variation. Our findings not only highlight the efficacy of largely community-science and museum-based datasets, but our models provide a baseline for predictions of future abundance of lesser-known arthropod species in the face of habitat destruction and climate change. Graphical Abstract","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":"6 1","pages":"1 - 15"},"PeriodicalIF":3.4,"publicationDate":"2022-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45304591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Abstract Plant-associated arthropods have been shown to cross large oceanic distances on floating plant material and to establish themselves on distant landmasses. Xyleborini (Coleoptera: Curculionidae: Scolytinae) ambrosia beetles occur in forests worldwide and are likely capable of long range dispersal. In less than 20 million years, this group dispersed from Asia to tropical regions of Africa and South America. The phylogeny, taxonomy, and biogeography of one Xyleborus species group which occurs on both continents are reviewed for this study. Based on a well-resolved molecular phylogeny resulting from parsimony, likelihood, and Bayesian analyses of four gene loci, we describe a new monophyletic genus, Xenoxylebora Osborn, Smith & Cognato, gen. nov., for this bicontinental Xyleborus species group with seven Afrotropical and six Neotropical species. Six new species are described: Xenoxylebora pilosa Osborn, Smith & Cognato, sp. nov. from Africa, and Xenoxylebora addenda Osborn, Smith & Cognato, sp. nov., Xenoxylebora calculosa Osborn, Smith & Cognato, sp. nov., Xenoxylebora hystricosa Osborn, Smith & Cognato, sp. nov., Xenoxylebora serrata Osborn, Smith & Cognato, sp. nov., and Xenoxylebora sulcata Osborn, Smith & Cognato, sp. nov., from South America. Seven new combinations from Xyleborus are proposed: Xenoxylebora caudata (Schedl 1957) comb. nov., Xenoxylebora collarti (Eggers 1932) comb. nov., Xenoxylebora perdiligens (Schedl 1937) comb. nov., Xenoxylebora sphenos (Sampson 1912) comb. nov., Xenoxylebora subcrenulata (Eggers 1932) comb. nov., and Xenoxylebora syzygii (Nunberg 1959) comb. nov. from Africa, and Xenoxylebora neosphenos (Schedl 1976) comb. nov. from South America. One new synonym is proposed: Xenoxylebora sphenos (Sampson 1912) = Xyleborus tenellus Schedl 1957 syn. nov. Descriptions, diagnoses, images, and a key to the identification of all 13 species are provided. The sequence of colonization between Africa and South America is uncertain for Xenoxylebora. Prevailing ocean currents and predominant locality patterns observed for other organisms suggest an African Xenoxylebora origin. However, the phylogeny, biogeographical analyses, and a calibrated divergence time suggest a possible South American origin for African Xenoxylebora (2.3 Ma, 95% HDP 4.5–0.6 Ma), which is supported by the occurrence of ocean counter currents between the continents and evidence of dispersal from South America to Africa among some plant and arthropod taxa.
{"title":"New Xyleborine (Coleoptera: Curculionidae: Scolytinae) Genus With an Afrotropical-Neotropical Distribution","authors":"R. Osborn, Sarah M. Smith, Anthony I Cognato","doi":"10.1093/isd/ixac016","DOIUrl":"https://doi.org/10.1093/isd/ixac016","url":null,"abstract":"Abstract Plant-associated arthropods have been shown to cross large oceanic distances on floating plant material and to establish themselves on distant landmasses. Xyleborini (Coleoptera: Curculionidae: Scolytinae) ambrosia beetles occur in forests worldwide and are likely capable of long range dispersal. In less than 20 million years, this group dispersed from Asia to tropical regions of Africa and South America. The phylogeny, taxonomy, and biogeography of one Xyleborus species group which occurs on both continents are reviewed for this study. Based on a well-resolved molecular phylogeny resulting from parsimony, likelihood, and Bayesian analyses of four gene loci, we describe a new monophyletic genus, Xenoxylebora Osborn, Smith & Cognato, gen. nov., for this bicontinental Xyleborus species group with seven Afrotropical and six Neotropical species. Six new species are described: Xenoxylebora pilosa Osborn, Smith & Cognato, sp. nov. from Africa, and Xenoxylebora addenda Osborn, Smith & Cognato, sp. nov., Xenoxylebora calculosa Osborn, Smith & Cognato, sp. nov., Xenoxylebora hystricosa Osborn, Smith & Cognato, sp. nov., Xenoxylebora serrata Osborn, Smith & Cognato, sp. nov., and Xenoxylebora sulcata Osborn, Smith & Cognato, sp. nov., from South America. Seven new combinations from Xyleborus are proposed: Xenoxylebora caudata (Schedl 1957) comb. nov., Xenoxylebora collarti (Eggers 1932) comb. nov., Xenoxylebora perdiligens (Schedl 1937) comb. nov., Xenoxylebora sphenos (Sampson 1912) comb. nov., Xenoxylebora subcrenulata (Eggers 1932) comb. nov., and Xenoxylebora syzygii (Nunberg 1959) comb. nov. from Africa, and Xenoxylebora neosphenos (Schedl 1976) comb. nov. from South America. One new synonym is proposed: Xenoxylebora sphenos (Sampson 1912) = Xyleborus tenellus Schedl 1957 syn. nov. Descriptions, diagnoses, images, and a key to the identification of all 13 species are provided. The sequence of colonization between Africa and South America is uncertain for Xenoxylebora. Prevailing ocean currents and predominant locality patterns observed for other organisms suggest an African Xenoxylebora origin. However, the phylogeny, biogeographical analyses, and a calibrated divergence time suggest a possible South American origin for African Xenoxylebora (2.3 Ma, 95% HDP 4.5–0.6 Ma), which is supported by the occurrence of ocean counter currents between the continents and evidence of dispersal from South America to Africa among some plant and arthropod taxa.","PeriodicalId":48498,"journal":{"name":"Insect Systematics and Diversity","volume":"6 1","pages":"1 - 20"},"PeriodicalIF":3.4,"publicationDate":"2022-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44304463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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