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An approach to the microbiological risk ranking of cheeses 奶酪微生物风险分级方法
IF 3 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-12-01 Epub Date: 2024-11-04 DOI: 10.1016/j.mran.2024.100328
Elli Amanatidou , J. Andrew Hudson , Johanna Jackson , Victoria Cohen , Svetlozara Chobanova , Marianne James , Andy Axon
The Food and Agriculture Organization (FAO) promote risk categorization approaches to assist understanding the public health risk associated with imported foods such as cheeses. A risk categorization should use information from the imported food, importer and exporting country profile to establish risk associated with imported foods. The first step involves assessing the product characteristics whilst step two is intended to consider country specific controls.
In this paper, we describe the first step in the development of a risk ranking approach using product characteristics to rank cheeses based on microbiological risk. The approach is applied to sixty types that may be commonly traded, based on an assessment of UK data on cheese imports. It uses risk factors of milk pasteurization, ripening method, and predicted pathogen growth in the finished cheese. Each risk factor was scored, and the total used to rank the cheeses with respect to the likelihood of them containing viable pathogens at the border, dependent on initial pathogen presence and potential for subsequent growth. The possible range of scores was 0 to 6. After scoring, none scored 0 or 1, and 13 scored 6.
Using international foodborne disease outbreaks and EU Rapid Alert System for Food and Feed (RASFF) notifications as benchmarks, cheese types were assigned one of four qualitative risk levels, from Very Low to High, based on their scores. These qualitative intervals did not align with trade codes, which are not risk-based, as some codes included cheeses from different risk levels. Neither was there a good correlation with Codex cheese classes, although it was noted that some very hard cheeses (e.g., Parmesan) received the lowest risk scores.
When scores were compared with outbreak and RASFF qualitative data there was a good correlation. For example, of those scored, no cheese scoring ≤3 had received a RASFF notification or caused an outbreak. Of the outbreaks associated with cheese types that were scored, 83.3 % of outbreaks implicated cheeses with a score ≥5.
For the sixty cheeses presented here, the data required for scoring were available. However, data may not be available for all cheeses. Where it is necessary to score a cheese that is lacking the necessary data, a read-across approach would be a potential solution, but this would increase associated uncertainty. The use of a standardized approach to risk ranking of cheeses produced consistent risk-based information that can be compared between cheese types but not between two classification systems (Harmonised System and Codex system). This aligns with the fact that neither classification system was designed to correlate with consumer safety.
联合国粮食及农业组织(FAO)推广风险分类方法,以帮助了解奶酪等进口食品的公共卫生风险。风险分类应利用进口食品、进口商和出口国概况中的信息来确定与进口食品相关的风险。第一步是评估产品特征,第二步是考虑国家的具体控制措施。在本文中,我们介绍了利用产品特征根据微生物风险对奶酪进行风险分级的第一步。根据对英国奶酪进口数据的评估,该方法适用于六十种可能经常交易的奶酪。它使用了牛奶巴氏杀菌、成熟方法和成品奶酪中病原体生长预测等风险因素。对每个风险因素进行评分,并根据最初病原体的存在和随后生长的可能性,用总分对奶酪在边境含有存活病原体的可能性进行排序。评分范围为 0 至 6 分。以国际食源性疾病暴发和欧盟食品与饲料快速预警系统(RASFF)的通知为基准,根据奶酪类型的得分,将其划分为从极低到高四个定性风险等级之一。这些定性区间与不以风险为基础的贸易代码并不一致,因为有些代码包含了不同风险等级的奶酪。虽然注意到一些非常硬的奶酪(如帕尔马干酪)得到的风险分数最低,但与法典奶酪等级也没有很好的相关性。例如,在得分≤3 分的奶酪中,没有一种奶酪收到过 RASFF 通报或导致过疫情爆发。在与评分奶酪类型相关的疫情爆发中,83.3%的疫情爆发与评分≥5分的奶酪有关。然而,并非所有奶酪都有数据。如果需要对缺乏必要数据的奶酪进行评分,可采用读取数据的方法,但这会增加相关的不确定性。使用标准化方法对奶酪进行风险分级可以产生一致的基于风险的信息,这些信息可以在奶酪类型之间进行比较,但不能在两种分类系统(协调系统和食典系统)之间进行比较。这与两个分类系统的设计都与消费者安全无关这一事实是一致的。
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引用次数: 0
Biothermodynamic analysis of the Dengue virus: Empirical formulas, biosynthesis reactions and thermodynamic properties of antigen-receptor binding and biosynthesis 登革热病毒的生物热力学分析:抗原受体结合和生物合成的经验公式、生物合成反应和热力学特性
IF 3 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-12-01 Epub Date: 2024-10-15 DOI: 10.1016/j.mran.2024.100326
Marko E. Popović , Maja Stevanović , Vojin Tadić
After the experience with the COVID-19 pandemic, WHO has issued a warning about the possible causes of future pandemics. One such causative agent is the Dengue virus. Until now, we have had information mostly on biological properties of the Dengue virus and very little information about its chemical and thermodynamic properties. To be better prepared for a potential Dengue pandemic, the goal of this paper is to chemically and thermodynamically characterize the Dengue virus, as well as to describe the biophysical basis of the virus-host interactions of the Dengue virus. To that goal, the empirical formula was determined, as well as biosynthesis reactions and thermodynamic properties of antigen-receptor binding and thermodynamic properties of biosynthesis and multiplication of the Dengue virus. A model was developed of virus-host interactions between the Dengue virus and its host tissues, based on nonequilibrium thermodynamics.
在经历了 COVID-19 大流行之后,世卫组织就未来大流行的可能原因发出了警告。登革热病毒就是其中一种致病因子。到目前为止,我们所掌握的信息主要是登革热病毒的生物特性,而有关其化学和热力学特性的信息却非常少。为了更好地应对可能出现的登革热大流行,本文旨在从化学和热力学角度描述登革热病毒的特性,以及登革热病毒与宿主相互作用的生物物理基础。为此,确定了登革热病毒的经验公式、生物合成反应、抗原-受体结合的热力学性质以及生物合成和繁殖的热力学性质。根据非平衡热力学,建立了登革热病毒与其宿主组织之间的病毒-宿主相互作用模型。
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引用次数: 0
Modeling the growth probability of Clostridium Perfringens in cooked cured meat as affected by sodium chloride and sodium tripolyphosphate 建立受氯化钠和三聚磷酸钠影响的熟腌肉中梭状芽孢杆菌生长概率的模型
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2024-04-15 DOI: 10.1016/j.mran.2024.100296
Cheng-An Hwang, Lihan Huang, Shiowshuh Sheen

Clostridium perfringens has been implicated in food poisoning outbreaks linked to cooked cured meat. Although there are regulatory requirements to prevent its growth during meat production, additional control measures may reduce the C. perfringens risk. This study examined the effect of sodium chloride (salt) and sodium tripolyphosphate (STPP) on the growth probability of C. perfringens in a cooked cured meat. Ground beef (10 % fat) was mixed with 200 ppm sodium nitrite, 1–4 % salt, and 0–1.5 % STPP and inoculated with C. perfringens spores. Five grams of meat were vacuum-packaged in individual bags and heated at 70 °C for 30 min to activate the spores. Ten bags from each formulation were incubated at 46 °C for 48 h. The populations of C. perfringens before and after incubation were enumerated to determine the growth event of C. perfringens (an increase of >1.0 log CFU/g population after incubation) for each sample. The growth event ratios were fitted with a logistic model to develop a C. perfringens growth probability model as a function of the concentrations of salt and STPP. The combinations of 1 % salt and up to 1.5 % STPP were not able to prevent the growth of C. perfringens. For 2, 3, and 4 % salt, the growth/no growth boundaries were observed at approximately 1.5, 1.0, and 0.5 % STPP, respectively. The resulting model indicates that salt and STPP were significant factors (p < 0.05) affecting the growth probability of C. perfringens. This study identified the concentrations of salt and STPP that prevent the growth of C. perfringens in a cooked cured meat containing 200 ppm sodium nitrite. The model could be used for predicting the growth probability of C. perfringens as affected by salt and STPP concentrations and for selecting the additive concentrations that may reduce the growth probability of C. perfringens in cooked cured meat products.

在与煮熟的腌肉有关的食物中毒事件中,产气荚膜梭状芽孢杆菌一直都有牵连。尽管有法规要求在肉类生产过程中防止其生长,但额外的控制措施可能会降低产气荚膜梭菌的风险。本研究考察了氯化钠(盐)和三聚磷酸钠(STPP)对熟腌肉中产气孔杆菌生长概率的影响。将碎牛肉(10% 脂肪)与 200 ppm 的亚硝酸钠、1-4 % 的盐和 0-1.5 % 的 STPP 混合,并接种产气荚膜杆菌孢子。将五克肉真空包装在单独的袋子中,在 70 °C 下加热 30 分钟以激活孢子。对培养前后的产气荚膜杆菌种群进行计数,以确定每个样品的产气荚膜杆菌生长事件(培养后种群增加 1.0 log CFU/g)。用逻辑模型对生长事件比率进行拟合,以建立一个 C. perfringens 生长概率模型,作为盐和 STPP 浓度的函数。1 % 的盐和最高 1.5 % 的 STPP 组合无法阻止 C. perfringens 的生长。对于 2%、3% 和 4% 的盐,分别在约 1.5%、1.0% 和 0.5% 的 STPP 浓度时观察到生长/不生长界限。结果表明,盐和 STPP 是影响 C. perfringens 生长概率的重要因素(p < 0.05)。这项研究确定了在含有 200 ppm 亚硝酸钠的熟腌肉中阻止产气荚膜杆菌生长的盐和 STPP 浓度。该模型可用于预测盐和 STPP 浓度对产气荚膜杆菌生长几率的影响,并用于选择可降低产气荚膜杆菌在熟腌肉制品中生长几率的添加剂浓度。
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引用次数: 0
Return of the forgotten nightmare: Bordetella pertussis uses a more negative Gibbs energy of metabolism to outcompete its host organism 被遗忘的噩梦再次降临:百日咳博德特菌利用更负的吉布斯代谢能战胜宿主生物
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2024-04-04 DOI: 10.1016/j.mran.2024.100292
Marko E. Popović , Maja Stevanović , Marijana Pantović Pavlović

Pertussis (whooping cough) has been nearly eradicated during the 20th century, first of all due to an organized and comprehensive vaccination campaign that lasted for decades. Generations of doctors educated in Serbia (and other countries) rarely had an opportunity to see the clinical picture of pertussis. However, during 2023, the number of registered cases of pertussis in Serbia has increased several times. This is why the health authorities were forced to declare danger of an epidemic. During 2023, in Belgrade, around 1000 cases were registered. During the two months of 2024, 400 cases were registered. Some of them have ended with lethal outcome. This paper reports for the first time the biosynthesis reaction and thermodynamic properties of biosynthesis (enthalpy, entropy and Gibbs energy) of Bordetella pertussis, the cause of whooping cough. Moreover, a mechanistic model of multiplication of B. pertussis was developed. The mechanistic model was related to the pathogenesis of pertussis.

百日咳(百日咳)在 20 世纪几乎被根除,这首先要归功于持续数十年的有组织的全面疫苗接种运动。在塞尔维亚(和其他国家)接受教育的几代医生很少有机会看到百日咳的临床表现。然而,在 2023 年期间,塞尔维亚登记的百日咳病例数增加了数倍。因此,卫生当局被迫宣布有流行病的危险。2023 年期间,贝尔格莱德登记的病例约为 1 000 例。在 2024 年的两个月里,登记了 400 个病例。其中一些病例最终导致死亡。本文首次报道了百日咳病原体百日咳杆菌的生物合成反应和生物合成的热力学特性(焓、熵和吉布斯能)。此外,还建立了百日咳杆菌的繁殖机理模型。该机理模型与百日咳的发病机制有关。
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引用次数: 0
Using Quantitative Microbial Risk Assessment (QMRA) of SARS-CoV-2 to understand possible exposure to health risks in selected wastewater treatment plants located in the Eastern region of South Africa 利用 SARS-CoV-2 的微生物定量风险评估 (QMRA),了解南非东部地区某些污水处理厂可能面临的健康风险
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2024-04-07 DOI: 10.1016/j.mran.2024.100293
Velisa Vuyolwethu Qongwe , Kingsley Ehi Ebomah , Luyanda Msolo , Nolonwabo Nontongana , Anthony Ifeanyi Okoh

In the past two years, Covid-19 has emerged as the most severe and pressing public health issue, causing a great deal of damage to societal and economic welfare, as well as causing illness and mortality. The operators in wastewater treatment plants (WWTPs), particularly those employed in rural communities, appear to often exhibit a lack of adherence to proper safety protocols by not utilizing sufficient protective equipment while handling unprocessed sewage samples throughout the different phases of wastewater treatment and disposal. This study aimed at examining the potential health risk of infection among WWTP operators, as a result of unintentional ingestion of wastewater during routine duties in facilities that receive influent containing Severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) from various areas. This study examined the prevalence of SARS-CoV-2 in grab samples of untreated wastewater samples using the real-time quantitative polymerase chain reaction (RT-qPCR) technique and quantitative microbial risk assessment (QMRA) model was employed on three probable exposure of SARS-CoV-2 scenarios that are expressed as moderate, aggressive and extreme (2 mL, 10 mL, 20 mL) to evaluate the probability of infection to WWTP workers based on the 6 h that the workers spent in WWTPs performing their daily activities which exposed them to potential health risk of various pathogens. At the highest SARS-CoV-2 genome of 266.23 × 102 gc/mL, the findings indicated that there was no statistically significant difference in the probability of infections with respect to seasonal differences because the P(i) value was greater than 0.05 (p > 0.05). Overall, P(i) was highly significant across all volumetric scenarios in the study with p value that was p < 0.001. The probability of getting infected during the different seasons is assumed to be low since there was no statistically difference in P(i) with respect to season however it can be assumed that there is a high chance of getting infected regardless of volumetric intake. Our study suggests that the risk of accidental occupational exposure to SARS-CoV-2 in raw wastewater is negligible to workers whereby workers would perform their daily activities without wearing protective gear. Nevertheless, the importance and work of WWTPs by workers should not be overlooked. Regardless of the situation, it is widely recognized that residential wastewater poses a potential risk of infection due to the presence of several enteric pathogens, therefore, it is crucial to ensure that those who are occupationally exposed to untreated wastewater are well equipped with suitable personal protective equipment (PPE).

在过去两年中,Covid-19 已成为最严重、最紧迫的公共卫生问题,对社会和经济福利造成了巨大损失,并导致疾病和死亡。污水处理厂(WWTPs)的操作人员,尤其是农村社区的操作人员,在污水处理和处置的不同阶段处理未经处理的污水样本时,似乎往往没有使用足够的防护设备,因而没有遵守适当的安全规程。本研究旨在探讨污水处理厂操作人员在日常工作中无意摄入污水而感染疾病的潜在健康风险,因为这些设施从不同地区接收含有严重急性呼吸系统综合征冠状病毒 2(SARS-COV-2)的污水。本研究采用实时定量聚合酶链反应(RT-qPCR)技术检测了未经处理的废水抓取样本中的 SARS-CoV-2 感染率,并针对三种可能的 SARS-CoV-2 感染情况采用了微生物定量风险评估(QMRA)模型、根据污水处理厂工人在污水处理厂从事日常活动的 6 小时时间,评估他们感染 SARS-CoV-2 的可能性,这三种情况分别表示为中度、严重和极端(2 mL、10 mL、20 mL),使他们面临各种病原体的潜在健康风险。在 SARS-CoV-2 基因组最高为 266.23 × 102 gc/mL 时,研究结果表明,由于 P(i) 值大于 0.05 (p >0.05),因此感染概率与季节性差异在统计学上没有显著差异。总体而言,P(i) 在研究中的所有体积情况下都非常显著,P 值为 p < 0.001。由于不同季节的 P(i)在统计学上没有差异,因此可以认为在不同季节受感染的概率较低,但也可以认为,无论摄入量多少,受感染的概率都很高。我们的研究结果表明,由于工人在日常工作中不穿戴防护装备,因此他们在工作中意外接触原废水中的 SARS-CoV-2 的风险微乎其微。然而,工人在污水處理廠工作的重要性不容忽視。无论情况如何,人们普遍认识到,住宅废水中含有多种肠道病原体,具有潜在的感染风险,因此,必须确保那些因工作而接触未经处理的废水的人配备适当的个人防护设备。
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引用次数: 0
The wind of change: Gibbs energy of binding and infectivity evolution of Omicron BA.2.86 Pirola, EG.5.1, XBB.1.16 Arcturus, CH.1.1 and BN.1 variants of SARS-CoV-2 变化之风:SARS-CoV-2的Omicron BA.2.86 Pirola、EG.5.1、XBB.1.16 Arcturus、CH.1.1和BN.1变体的吉布斯结合能和传染性演变
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2024-02-01 DOI: 10.1016/j.mran.2024.100290
Marko E. Popović , Gavrilo Šekularac , Marta Popović

A question is often asked about what tomorrow brings. During the last 4 years of the COVID-19 pandemic, this question was asked with every appearance of a new SARS-CoV-2 variant. It seems that science has an ability to offer a relatively reliable answer. Theoretical and experimental research have allowed a deep insight into structure and function of SARS-CoV-2. Moreover, the developed mechanistic models allow prediction of virus-host interactions. In August 2023, the Omicron BA.2.86 Pirola variant was detected. Taught by the bad experience from 2019 to 2023, when every new variant that appeared during SARS-CoV-2 evolution has caused a new pandemic wave, the question was raised whether this will be the case with the new variant. Research presented in this paper shows that the driving force for antigen-receptor binding of the Omicron BA.2.86 variant is lower than that of the BN.1 and similar to that of the other variants. Based on the presented research, it seems that the new variant will not be more aggressive relative to the previous variants. The movement in the number of newly infected cases in USA in the period between August and mid-October 2023 is in favor of this prediction.

人们经常会问,明天会发生什么?在 COVID-19 大流行的过去 4 年中,每出现一种新的 SARS-CoV-2 变体,人们就会提出这个问题。科学似乎有能力提供一个相对可靠的答案。理论和实验研究使人们得以深入了解 SARS-CoV-2 的结构和功能。此外,建立的机理模型还可以预测病毒与宿主的相互作用。2023 年 8 月,发现了 Omicron BA.2.86 Pirola 变种。从 2019 年到 2023 年,SARS-CoV-2 演变过程中出现的每一个新变种都会引发新一轮的大流行,有鉴于此,人们提出了新变种是否也会如此的问题。本文介绍的研究表明,Omicron BA.2.86 变体的抗原受体结合驱动力低于 BN.1,与其他变体相似。根据上述研究,新变种似乎不会比以前的变种更具侵袭性。2023 年 8 月至 10 月中旬期间美国新感染病例数量的变化也支持这一预测。
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引用次数: 0
Guidelines for elevator design to mitigate the risk of spread of airborne diseases 降低空气传播疾病风险的电梯设计指南
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2023-12-01 DOI: 10.1016/j.mran.2023.100289
Pravin M. Tipnis , Parag Chaware , Vinay G Vaidya

Airborne viral transmission in confined spaces, such as elevators, could lead to the spread of diseases such as COVID-19. A quantitative study of viral transmission in enclosed spaces, with a focus on assessing the efficacy of the present ventilation methods is hard to find. Additionally, there is a lack of guidelines for viral dispersion. The non-availability of such information reduces overall effectiveness in controlling the spread of the virus. A properly designed ventilation system for the elevator car will benefit in both pandemic situations as well as non-pandemic situations, especially for people using hospital elevators. For better control of the airborne viral transmission spread, it is essential to study the airflow in elevator cars. Exposure to high-emitter coughing for one minute by a SARS-CoV-2-infected person in an elevator can increase the risk of the virus reaching the lungs by generating a viral load that may remain airborne for a long time. There is little that has been considered for lessening the anticipated viral load in the elevator car. In this paper, we use a two-step approach. The first step is the risk assessment, and the second is risk mitigation. The risk is assessed by computing the probable viral load a healthy passenger will be subjected to during the typical travel in an elevator car contaminated by the ride of an infectious person. It is seen that the ventilation provided as per the minimum permissible requirements by various international codes is inadequate to maintain the viral load in the elevator car below the risky levels. To come up with the risk mitigation strategies, the required ventilation in the car was computed using a Computational Fluid Dynamics (CFD) model. Further, mathematical models are developed to enable quick calculations during the design of the elevator car ventilation system. Our CFD study shows that in the case of a 20-passenger capacity elevator car, with doors open, a 2000 Cubic Feet per Minute (CFM) airflow will disperse most of the viral load in less than one minute. In this paper, we give easy-to-follow design guidelines, and mathematical models to enable quick calculations during the design of the elevator car ventilation system. This study is useful for practicing engineers to achieve effective ventilation of the elevator car to curtail the spread of viral transmission.

病毒在电梯等密闭空间的空气传播可能导致COVID-19等疾病的传播。很难找到对封闭空间中病毒传播的定量研究,重点是评估当前通风方法的有效性。此外,缺乏关于病毒扩散的指导方针。无法获得这类信息降低了控制病毒传播的总体有效性。设计合理的电梯轿厢通风系统,无论在大流行还是非大流行情况下,都将受益,特别是对使用医院电梯的人员。为了更好地控制病毒在空气中的传播,对电梯轿厢内的气流进行研究是必要的。sars - cov -2感染者在电梯里接触高辐射源咳嗽一分钟,会增加病毒到达肺部的风险,因为它会产生可能在空气中停留很长时间的病毒载量。几乎没有考虑过减少电梯轿厢中预期的病毒载量。在本文中,我们使用两步方法。第一步是风险评估,第二步是风险缓解。通过计算一名健康乘客在乘坐被感染者污染的电梯期间的典型旅行中可能受到的病毒载量来评估风险。可见,按照各种国际规范的最低允许要求提供的通风不足以将电梯轿厢内的病毒载量维持在危险水平以下。为了提出降低风险的策略,使用计算流体动力学(CFD)模型计算了车内所需的通风。此外,还建立了数学模型,以便在电梯轿厢通风系统的设计过程中进行快速计算。我们的CFD研究表明,在一个可容纳20名乘客的电梯轿厢中,在门打开的情况下,每分钟2000立方英尺(CFM)的气流将在不到一分钟的时间内驱散大部分病毒载量。在本文中,我们给出了易于遵循的设计准则和数学模型,以便在电梯轿厢通风系统的设计过程中快速计算。本研究对执业工程师实现电梯轿厢的有效通风,减少病毒传播的传播有一定的参考价值。
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引用次数: 0
A critical evaluation of parametric models for predicting faecal indicator bacteria concentrations in greywater 对预测灰水中粪便指示菌浓度的参数模型进行批判性评估
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2024-04-16 DOI: 10.1016/j.mran.2024.100297
Émile Sylvestre , Michael A. Jahne , Eva Reynaert , Eberhard Morgenroth , Timothy R. Julian

Greywater reuse is a strategy to address water scarcity, necessitating the selection of treatment processes that balance cost-efficiency and human health risks. A key aspect in evaluating these risks is understanding pathogen contamination levels in greywater, a complex task due to intermittent pathogen occurrences. To address this, faecal indicator organisms like E. coli are often monitored as proxies to evaluate faecal contamination levels and infer pathogen concentrations. However, the wide variability in faecal indicator concentrations poses challenges in their modelling for quantitative microbial risk assessment (QMRA). Our study critically assesses the adequacy of parametric models in predicting the variability in E. coli concentrations in greywater. We found that models that build on summary statistics, like medians and standard deviations, can substantially underestimate the variability in E. coli concentrations. More appropriate models may provide more accurate estimations of, and uncertainty around, peak E. coli concentrations. To demonstrate this, a Poisson lognormal distribution model is fit to a data set of E. coli concentrations measured in shower and laundry greywater sources. This model estimated arithmetic mean E. coli concentrations in laundry waters at approximately 1.0E + 06 MPN 100 mL−1. These results are around 2.0 log10 units higher than estimations from a previously used hierarchical lognormal model based on aggregated summary data from multiple studies. Such differences are considerable when assessing human health risks and setting pathogen reduction targets for greywater reuse. This research highlights the importance of making raw monitoring data available for more accurate statistical evaluations than those based on summary statistics. It also emphasizes the crucial role of model comparison, selection, and validation to inform policy-relevant outcomes.

灰水回用是解决水资源短缺问题的一种策略,因此有必要选择兼顾成本效益和人类健康风险的处理工艺。评估这些风险的一个关键方面是了解灰水中的病原体污染水平,由于病原体时有发生,这是一项复杂的任务。为解决这一问题,通常会对大肠杆菌等粪便指示生物进行监测,作为评估粪便污染水平和推断病原体浓度的替代物。然而,粪便指示生物浓度的变异性很大,这给建立微生物定量风险评估(QMRA)模型带来了挑战。我们的研究严格评估了参数模型在预测灰水中大肠杆菌浓度变化方面的适当性。我们发现,建立在中位数和标准偏差等汇总统计数据基础上的模型会大大低估大肠杆菌浓度的变异性。更合适的模型可以更准确地估计大肠杆菌浓度峰值及其不确定性。为了证明这一点,我们将泊松对数正态分布模型拟合到淋浴和洗衣灰水中测得的大肠杆菌浓度数据集。该模型估计洗衣水的算术平均大肠杆菌浓度约为 1.0E + 06 MPN 100 mL-1。这些结果比之前使用的基于多项研究汇总数据的分层对数正态模型的估计值高出约 2.0 log10 单位。在评估人类健康风险和设定灰水回用的病原体减少目标时,这种差异是相当大的。这项研究强调了提供原始监测数据的重要性,以便进行比基于汇总统计数据更准确的统计评估。它还强调了模型比较、选择和验证在告知政策相关结果方面的关键作用。
{"title":"A critical evaluation of parametric models for predicting faecal indicator bacteria concentrations in greywater","authors":"Émile Sylvestre ,&nbsp;Michael A. Jahne ,&nbsp;Eva Reynaert ,&nbsp;Eberhard Morgenroth ,&nbsp;Timothy R. Julian","doi":"10.1016/j.mran.2024.100297","DOIUrl":"https://doi.org/10.1016/j.mran.2024.100297","url":null,"abstract":"<div><p>Greywater reuse is a strategy to address water scarcity, necessitating the selection of treatment processes that balance cost-efficiency and human health risks. A key aspect in evaluating these risks is understanding pathogen contamination levels in greywater, a complex task due to intermittent pathogen occurrences. To address this, faecal indicator organisms like <em>E. coli</em> are often monitored as proxies to evaluate faecal contamination levels and infer pathogen concentrations. However, the wide variability in faecal indicator concentrations poses challenges in their modelling for quantitative microbial risk assessment (QMRA). Our study critically assesses the adequacy of parametric models in predicting the variability in <em>E. coli</em> concentrations in greywater. We found that models that build on summary statistics, like medians and standard deviations, can substantially underestimate the variability in <em>E. coli</em> concentrations. More appropriate models may provide more accurate estimations of, and uncertainty around, peak <em>E. coli</em> concentrations. To demonstrate this, a Poisson lognormal distribution model is fit to a data set of <em>E. coli</em> concentrations measured in shower and laundry greywater sources. This model estimated arithmetic mean <em>E. coli</em> concentrations in laundry waters at approximately 1.0E + 06 MPN 100 mL<sup>−1</sup>. These results are around 2.0 log<sub>10</sub> units higher than estimations from a previously used hierarchical lognormal model based on aggregated summary data from multiple studies. Such differences are considerable when assessing human health risks and setting pathogen reduction targets for greywater reuse. This research highlights the importance of making raw monitoring data available for more accurate statistical evaluations than those based on summary statistics. It also emphasizes the crucial role of model comparison, selection, and validation to inform policy-relevant outcomes.</p></div>","PeriodicalId":48593,"journal":{"name":"Microbial Risk Analysis","volume":"26 ","pages":"Article 100297"},"PeriodicalIF":2.8,"publicationDate":"2024-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352352224000082/pdfft?md5=df790524916e9d9f7835570932441a90&pid=1-s2.0-S2352352224000082-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140631255","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
When the Weibull model helps in deciphering bacterial resistance variability related to survival behaviour 当 Weibull 模型有助于解读与生存行为有关的细菌耐药性变异时
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2024-04-15 DOI: 10.1016/j.mran.2024.100294
Jeanne Marie Membré , Ivan Leguérinel

Survival curves of bacterial vegetative cells or spores subjected to an inactivation process are often log-linear and then described by the d-value parameter. However, non log-linear, convex, shapes might be also observed particularly when mild inactivation treatments are applied. Our objective was to investigate whether the 3-parameters Weibull model (logN0, δ, p) could be used to go beyond a simple fitting of convex curve by providing information related to bacterial variability. First, survival curves were simulated to mimic the behaviour of a cocktail containing bacterial vegetative cells or spores undergoing an inactivation treatment, on which the Weibull model was fitted. Second, a mathematical model was developed to describe the link between the Weibull parameters p and delta with the d-values of sub-populations of bacterial vegetative cells or spores (considering as well the percentage of each sub-population). Based on this model, it was shown that the Weibull model can be used to go beyond a simple description of a convex curve. For instance, if p is estimated around 0.8, that means the presence of a resistant sub-population, but with a limited resistant variability (ratio of resistance from 1.5 to 4). In contrast, if p is estimated to 0.3–04 that means the presence of a resistant sub-population in a small proportion (less than 10 %) combined with a large resistant variability (ratio of 10 or more). This study shows that the Weibull model can be used in combination with the new model developed here to decipher vegetative cell or spore resistance variability, with application in food industry processes such as thermal or physical inactivation treatment as well as cleaning and disinfection verification procedure.

细菌无性细胞或孢子在灭活过程中的存活曲线通常是对数线性的,然后用 D 值参数来描述。然而,也可能观察到非对数线性的凸形曲线,尤其是在采用温和灭活处理时。我们的目的是研究 3 参数 Weibull 模型(logN, , p)是否能通过提供与细菌变异性相关的信息,超越简单的凸曲线拟合。首先,模拟含有细菌无性细胞或孢子的鸡尾酒在灭活处理过程中的存活曲线,在此基础上拟合 Weibull 模型。其次,建立了一个数学模型来描述 Weibull 参数 p 和 delta 与细菌无性细胞或孢子亚群 D 值之间的联系(同时考虑每个亚群的百分比)。该模型表明,Weibull 模型的使用可以超越凸曲线的简单描述。例如,如果估计 p 在 0.8 左右,这意味着存在抗性亚群,但抗性变异性有限(抗性比率在 1.5 到 4 之间)。相反,如果 p 值估计为 0.3-04,则表示抗性亚群的比例很小(小于 10%),但抗性变异性很大(抗性比为 10 或以上)。这项研究表明,Weibull 模型可与本研究开发的新模型结合使用,以解读无性细胞或孢子的抗性变异性,并可应用于食品工业过程,如热或物理灭活处理以及清洁和消毒验证程序。
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引用次数: 0
Like a summer storm: Biothermodynamic analysis of Rotavirus A - Empirical formula, biosynthesis reaction and driving force of virus multiplication and antigen-receptor binding 如夏日风暴轮状病毒 A 的生物热力学分析 - 病毒繁殖和抗原受体结合的经验公式、生物合成反应和驱动力
IF 2.8 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Pub Date : 2024-04-01 Epub Date: 2024-02-08 DOI: 10.1016/j.mran.2024.100291
Marko E. Popović, Gavrilo Šekularac, Marija Mihailović

For thousands of years, medicine has made efforts to study and heal infectious diseases. For centuries, medicine and biology have attempted to study the mechanisms of development of infectious diseases. For 100 years, virology has tried to understand and describe different viruses and reveal the secrets of pathophysiology of infections. Several decades ago, the efforts of biomedical scientists were joined by chemists. Since then viruses have been explored not only as biological systems, but also as chemical systems. With the beginning of the COVID-19 pandemic, biothermodynamics has made its contribution to the research on driving forces and mechanisms of lifecycles of viruses, the virus-host interaction. Since then, viruses have been analyzed as biological, chemical and thermodynamic systems. After reporting of chemical and thermodynamic properties of SARS-CoV, MERS-CoV, SARS-CoV-2, Ebola, Mpox, West Nile virus and bacteriophages, this paper reports for the first time the empirical formulas (unit carbon formulas) of Rotavirus A, as well as its thermodynamic properties of virus-host interaction at the membrane (antigen-receptor binding) and virus-host interaction in the cytoplasm (virus multiplication). The virus-host interactions are essentially chemical reactions, the driving force of which is Gibbs energy (of binding and biosynthesis).

几千年来,医学一直在努力研究和治疗传染病。几个世纪以来,医学和生物学一直试图研究传染病的发病机制。100 年来,病毒学一直试图了解和描述不同的病毒,揭示感染病理生理学的秘密。几十年前,化学家加入了生物医学家的努力。从那时起,人们不仅将病毒作为生物系统,还将其作为化学系统进行研究。随着 COVID-19 大流行的开始,生物热力学对病毒生命周期的驱动力和机制以及病毒与宿主相互作用的研究做出了贡献。从那时起,病毒就被作为生物、化学和热力学系统进行分析。在报告了 SARS-CoV、MERS-CoV、SARS-CoV-2、埃博拉病毒、Mpox、西尼罗河病毒和噬菌体的化学和热力学性质之后,本文首次报告了轮状病毒 A 的经验公式(单位碳式)及其在膜上的病毒-宿主相互作用(抗原-受体结合)和在细胞质中的病毒-宿主相互作用(病毒繁殖)的热力学性质。病毒与宿主的相互作用本质上是化学反应,其驱动力是(结合和生物合成的)吉布斯能。
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引用次数: 0
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Microbial Risk Analysis
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