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A spatial model with vaccinations for COVID-19 in South Africa 南非COVID-19疫苗接种的空间模型
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-11-09 DOI: 10.1016/j.spasta.2023.100792
Claudia Dresselhaus , Inger Fabris-Rotelli , Raeesa Manjoo-Docrat , Warren Brettenny , Jenny Holloway , Nada Abdelatif , Renate Thiede , Pravesh Debba , Nontembeko Dudeni-Tlhone

Since the emergence of the novel COVID-19 virus pandemic in December 2019, numerous mathematical models were published to assess the transmission dynamics of the disease, predict its future course, and evaluate the impact of different control measures. The simplest models make the basic assumptions that individuals are perfectly and evenly mixed and have the same social structures. Such assumptions become problematic for large developing countries that aggregate heterogeneous COVID-19 outbreaks in local areas. Thus, this paper proposes a spatial SEIRDV model that includes spatial vaccination coverage, spatial vulnerability, and level of mobility, to take into account the spatial–temporal clustering pattern of COVID-19 cases. The conclusion of this study is that immunity, government interventions, infectiousness and virulence are the main drivers of the spread of COVID-19. These factors should be taken into consideration when scientists, public policy makers and other stakeholders in the health community analyse, create and project future disease prevention scenarios. Such a model has a place for disease outbreaks that may occur in future, allowing for the inclusion of vaccination rates in a spatial manner.

自2019年12月新型冠状病毒病(COVID-19)大流行出现以来,人们发布了许多数学模型,以评估该疾病的传播动态,预测其未来进程,并评估不同控制措施的影响。最简单的模型做出了基本的假设,即个体是完全均匀混合的,具有相同的社会结构。这种假设对于在地方地区聚集异质COVID-19疫情的大型发展中国家来说是有问题的。为此,本文提出了考虑COVID-19病例时空聚类模式的空间SEIRDV模型,该模型包括空间疫苗接种覆盖率、空间脆弱性和流动性水平。本研究的结论是,免疫、政府干预、传染性和毒性是COVID-19传播的主要驱动因素。当科学家、公共决策者和卫生界的其他利益相关者分析、创建和预测未来的疾病预防情景时,应该考虑到这些因素。这种模型考虑到未来可能发生的疾病暴发,允许以空间方式纳入疫苗接种率。
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引用次数: 0
General spatial model meets adaptive shrinkage generalized moment estimation: Simultaneous model and moment selection 广义空间模型满足自适应收缩广义矩估计:模型和矩的同步选择
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-11-07 DOI: 10.1016/j.spasta.2023.100791
Yunquan Song, Yaqi Liu, Xiaodi Zhang, Yuanfeng Wang

Spatial data are widely used in various scenarios of life and are highly valued, and their analysis and research have achieved remarkable results. Spatial data have spatial effects and do not satisfy the assumption of independence; thus, the traditional econometric analysis methods cannot be directly used in spatial models, and the spatial autocorrelation and spatial heterogeneity of spatial data make the research more complicated and difficult. Generalized moment estimation(GMM) is a powerful tool for statistical modeling and inference of spatial data. Considering the case where there is a set of correctly specified moment conditions and another set of possibly misspecified moment conditions for spatial data, this paper proposes a GMM shrinkage method to estimate the unknown parameters for spatial autoregressive model with spatial autoregressive disturbances. The proposed GMM estimators are shown to enjoy oracle properties; i.e., it selects the valid moment conditions consistently from the candidate set and includes them into estimation automatically. The resulting estimator is asymptotically as efficient as the GMM estimator based on all valid moment conditions. Monte Carlo studies show that the method works well in terms of valid moment selection and the finite sample properties of its estimators.

空间数据广泛应用于生活的各个场景,受到人们的高度重视,对空间数据的分析和研究取得了显著的成果。空间数据具有空间效应,不满足独立性假设;因此,传统的计量分析方法不能直接用于空间模型,空间数据的空间自相关性和空间异质性使研究更加复杂和困难。广义矩估计(GMM)是空间数据统计建模和推理的有力工具。针对空间数据存在一组正确指定的力矩条件和另一组可能不正确指定的力矩条件的情况,提出了一种估计具有空间自回归扰动的空间自回归模型未知参数的GMM收缩方法。所提出的GMM估计器被证明具有oracle特性;即,它从候选集中一致地选择有效的矩条件,并将其自动纳入估计。所得估计量与基于所有有效矩条件的GMM估计量渐近相同。蒙特卡罗研究表明,该方法在有效矩选择和估计量的有限样本特性方面具有良好的效果。
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引用次数: 0
Geographically Weighted Zero-Inflated Negative Binomial Regression: A general case for count data 地理加权零膨胀负二项回归:计数数据的一般情况
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-11-04 DOI: 10.1016/j.spasta.2023.100790
Alan Ricardo da Silva, Marcos Douglas Rodrigues de Sousa

Poisson and Negative Binomial Regression Models are often used to describe the relationship between a count dependent variable and a set of independent variables. However, these models fail to analyze data with an excess of zeros, being Zero-Inflated Poisson (ZIP) and Zero-Inflated Negative Binomial (ZINB) models the most appropriate to fit this kind of data. To Incorporate the spatial dimension into the count data models, Geographically Weighted Poisson Regression (GWPR), Geographically Weighted Negative Binomial Regression (GWNBR) and Geographically Weighted Zero-Inflated Poisson Regression (GWZIPR) have been developed, but the zero-inflation part of the negative binomial distribution is undeveloped in order to incorporate the overdispersion and the excess of zeros, as was at the beginning of the COVID-19 pandemic, whereas some places were having an outbreak of cases and in others places, there were no cases yet. Therefore, we propose a Geographically Weighted Zero-Inflated Negative Binomial Regression (GWZINBR) model which can be considered a general case for count data, since locally it can become a GWZIPR, GWNBR or a GWPR model. We applied this model to simulated data and to the cases of COVID-19 in South Korea at the beginning of the pandemic in 2020 and the results showed a better understanding of the phenomenon compared to the GWNBR model.

泊松和负二项回归模型常用于描述一个计数因变量和一组自变量之间的关系。然而,这些模型不能分析超过零的数据,零膨胀泊松(ZIP)和零膨胀负二项(ZINB)模型最适合拟合这类数据。为了将空间维度纳入计数数据模型,我们开发了地理加权泊松回归(GWPR)、地理加权负二项回归(GWNBR)和地理加权零膨胀泊松回归(GWZIPR),但为了将过度分散和零过剩(如COVID-19大流行开始时)纳入,负二项分布的零膨胀部分尚未开发。一些地方出现了病例爆发,而另一些地方还没有出现病例。因此,我们提出了一个地理加权零膨胀负二项回归(GWZINBR)模型,它可以被认为是计数数据的一般情况,因为局部它可以成为GWZIPR, GWNBR或GWPR模型。我们将该模型应用于模拟数据和2020年大流行初期韩国的COVID-19病例,结果显示,与GWNBR模型相比,该模型对这一现象有了更好的理解。
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引用次数: 0
Review of Sujit Sahu’s “Bayesian modeling of spatio-temporal data with R” Sujit Sahu“时空数据的贝叶斯建模与R”综述
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-10-31 DOI: 10.1016/j.spasta.2023.100788
Patrick E. Brown
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引用次数: 0
A more accurate estimation with kernel machine for nonparametric spatial lag models 利用核机对非参数空间滞后模型进行更精确的估计
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-10-12 DOI: 10.1016/j.spasta.2023.100786
Yu Shu, Jinwen Liang, Yaohua Rong, Zhenzhen Fu, Yi Yang

Ignoring potential spatial autocorrelation in georeferenced data may cause biased estimators. Furthermore, existing studies assume insufficiently flexible structure of spatial lag model for some practical applications, which makes it difficult to portray the complex relationship between responses and covariates. Thus, we propose a novel garrotized kernel machine estimation method for the nonparametric spatial lag model and develop an eigenvector spatial filtering algorithm with sparse regression to filter spatial autocorrelation out of the residuals. The “one-group-at-a-time” cyclical coordinate descent algorithm is introduced for a solution path of tuning parameters. Our method can better describe the potential nonlinear relationship between responses and covariates, making it possible to model high-order interaction effects among covariates. Numerical results and the analysis of commodity residential house prices in large and medium-sized Chinese cities indicate that the proposed method achieves better prediction performance compared with competing ones. The result of real data analysis can provide guidance for the government to take targeted suppression measures of house prices for different areas.

忽略地理参考数据中潜在的空间自相关可能会导致估计量存在偏差。此外,现有研究假设空间滞后模型的结构在某些实际应用中不够灵活,这使得很难描述响应和协变量之间的复杂关系。因此,我们为非参数空间滞后模型提出了一种新的加洛蒂核机估计方法,并开发了一种具有稀疏回归的特征向量空间滤波算法来滤除残差中的空间自相关。介绍了一种求解参数整定路径的“一组一次”循环坐标下降算法。我们的方法可以更好地描述响应和协变量之间潜在的非线性关系,从而有可能对协变量之间的高阶相互作用效应进行建模。数值结果和对中国大中城市商品住宅价格的分析表明,与竞争对手相比,该方法具有更好的预测性能。真实数据分析的结果可以为政府对不同地区的房价采取有针对性的抑制措施提供指导。
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引用次数: 0
Which parameterization of the Matérn covariance function? 哪一种参数化的matsamn协方差函数?
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-10-12 DOI: 10.1016/j.spasta.2023.100787
Kesen Wang , Sameh Abdulah , Ying Sun , Marc G. Genton

The Matérn family of covariance functions is currently the most popularly used model in spatial statistics, geostatistics, and machine learning to specify the correlation between two geographical locations based on spatial distance. Compared to existing covariance functions, the Matérn family has more flexibility in data fitting because it allows the control of the field smoothness through a dedicated parameter. Moreover, it generalizes other popular covariance functions. However, fitting the smoothness parameter is computationally challenging since it complicates the optimization process. As a result, some practitioners set the smoothness parameter at an arbitrary value to reduce the optimization convergence time. In the literature, studies have used various parameterizations of the Matérn covariance function, assuming they are equivalent. This work aims at studying the effectiveness of different parameterizations under various settings. We demonstrate the feasibility of inferring all parameters simultaneously and quantifying their uncertainties on large-scale data using the ExaGeoStat parallel software. We also highlight the importance of the smoothness parameter by analyzing the Fisher information of the statistical parameters. We show that the various parameterizations have different properties and differ from several perspectives. In particular, we study the three most popular parameterizations in terms of parameter estimation accuracy, modeling accuracy and efficiency, prediction efficiency, uncertainty quantification, and asymptotic properties. We further demonstrate their differing performances under nugget effects and approximated covariance. Lastly, we give recommendations for parameterization selection based on our experimental results.

Matérn协方差函数族是目前空间统计学、地统计学和机器学习中最常用的基于空间距离指定两个地理位置之间相关性的模型。与现有的协方差函数相比,Matérn族在数据拟合方面具有更大的灵活性,因为它允许通过专用参数控制场平滑度。此外,它还推广了其他流行的协方差函数。然而,拟合平滑度参数在计算上具有挑战性,因为它使优化过程复杂化。因此,一些从业者将平滑度参数设置为任意值,以减少优化收敛时间。在文献中,研究使用了Matérn协方差函数的各种参数化,假设它们是等价的。这项工作旨在研究在不同设置下不同参数化的有效性。我们证明了使用ExaGeoStat并行软件在大规模数据上同时推断所有参数并量化其不确定性的可行性。我们还通过分析统计参数的Fisher信息来强调平滑度参数的重要性。我们证明了各种参数化具有不同的性质,并且从几个角度来看是不同的。特别是,我们研究了三种最流行的参数化,即参数估计精度、建模精度和效率、预测效率、不确定性量化和渐近性质。我们进一步证明了它们在金块效应和近似协方差下的不同性能。最后,根据实验结果提出了参数化选择的建议。
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引用次数: 0
Spatio-temporal mapping of stunting and wasting in Nigerian children: A bivariate mixture modeling 尼日利亚儿童发育迟缓和消瘦的时空映射:一个二元混合模型
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-10-06 DOI: 10.1016/j.spasta.2023.100785
Ezra Gayawan , Osafu Augustine Egbon

Studies have shown that stunting and wasting indicators are strongly correlated among children, with the potential of concurrently affecting their physical and cognitive development. However, the identification of subpopulations of children with varying risks of stunting and wasting could be valuable for targeted intervention. This work proposed a bivariate spatio-temporal mixture model within a Bayesian framework to describe the spatial behavior of subpopulations of the children within the wider population of children under five years of age in Nigeria. The model assumes that each sub-population follows a Gaussian distribution, and therefore, the overall population is modeled by combining Gaussian sub-spatial models probabilistically. Inferences were based on the Markov chain Monte Carlo algorithm, that draw samples from the joint posterior distribution. The model was applied to data from four waves of the Nigerian Demographic and Health Survey. We identified a significant negative correlation between stunting and wasting among subpopulations with a negative spatial correlation between the spatial patterns of both illnesses. The findings demonstrate varying risk factors between the subpopulations with an evidence of spatio-temporal disparity in the likelihood of stunting and wasting. The findings underscore the need for a comprehensive national intervention program with attention given to high-burden states in a manner that involves communities and subpopulations. The maps could serve as a valuable tool for intervention planning.

研究表明,发育迟缓和消瘦指标在儿童中密切相关,有可能同时影响他们的身体和认知发展。然而,识别具有不同发育迟缓和消瘦风险的儿童亚群对于有针对性的干预可能是有价值的。这项工作在贝叶斯框架内提出了一个双变量时空混合模型,以描述尼日利亚更广泛的五岁以下儿童群体中儿童亚群体的空间行为。该模型假设每个子种群遵循高斯分布,因此,通过概率地组合高斯子空间模型来对总体种群进行建模。推断基于马尔可夫链蒙特卡罗算法,该算法从联合后验分布中提取样本。该模型应用于尼日利亚人口与健康调查的四波数据。我们发现亚群中发育迟缓和消瘦之间存在显著的负相关,两种疾病的空间模式之间存在负空间相关性。研究结果表明,亚群之间的风险因素各不相同,发育迟缓和消瘦的可能性存在时空差异。研究结果强调,有必要制定一项全面的国家干预计划,以涉及社区和亚群体的方式关注高负担州。这些地图可以作为干预规划的宝贵工具。
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引用次数: 0
Spatial linear discriminant analysis approaches for remote-sensing classification 遥感分类的空间线性判别分析方法
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-10-01 DOI: 10.1016/j.spasta.2023.100775
Thomas Suesse , Alexander Brenning , Veronika Grupp

Linear Discriminant Analysis (LDA) is a popular and simple classification tool that often outperforms more sophisticated modern machine learning techniques in remote sensing. We introduce a novel LDA method that uses spatial autocorrelation of all pixels of an object to be classified but also of other objects of the training set that are spatially close to improve classification performance. To simplify spatial modelling and model fitting, the methodology is applied to the transformed feature vectors. We term this method conditional spatial LDA. Much alike universal Kriging in geostatistical interpolation, the combined use of feature data and conditioning on labelled training data in conditional spatial LDA was best able to exploit the available geospatial data. The method is illustrated on a crop classification case study from the Aconcagua agricultural region in central Chile.

线性判别分析(LDA)是一种流行而简单的分类工具,在遥感中通常优于更复杂的现代机器学习技术。我们提出了一种新的LDA方法,该方法利用待分类对象的所有像素的空间自相关,以及训练集中空间接近的其他对象的空间自相关来提高分类性能。为了简化空间建模和模型拟合,将该方法应用于变换后的特征向量。我们称这种方法为条件空间LDA。与地理统计插值中的通用Kriging方法非常相似,在条件空间LDA中,结合使用特征数据和对标记训练数据的调节,可以最好地利用可用的地理空间数据。该方法以智利中部阿空加瓜农业区的作物分类案例研究为例进行了说明。
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引用次数: 0
Deep learning and spatial statistics 深度学习与空间统计学
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-10-01 DOI: 10.1016/j.spasta.2023.100774
Christopher K. Wikle, Jorge Mateu, Andrew Zammit-Mangion
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引用次数: 1
Spatio-temporal DeepKriging for interpolation and probabilistic forecasting 用于插值和概率预测的时空深度克里格
IF 2.3 2区 数学 Q1 Mathematics Pub Date : 2023-10-01 DOI: 10.1016/j.spasta.2023.100773
Pratik Nag , Ying Sun , Brian J. Reich

Gaussian processes (GP) and Kriging are widely used in traditional spatio-temporal modelling and prediction. These techniques typically presuppose that the data are observed from a stationary GP with a parametric covariance structure. However, processes in real-world applications often exhibit non-Gaussianity and nonstationarity. Moreover, likelihood-based inference for GPs is computationally expensive and thus prohibitive for large datasets. In this paper, we propose a deep neural network (DNN) based two-stage model for spatio-temporal interpolation and forecasting. Interpolation is performed in the first step, which utilizes a dependent DNN with the embedding layer constructed with spatio-temporal basis functions. For the second stage, we use Long-Short Term Memory (LSTM) and convolutional LSTM to forecast future observations at a given location. We adopt the quantile-based loss function in the DNN to provide probabilistic forecasting. Compared to Kriging, the proposed method does not require specifying covariance functions or making stationarity assumptions and is computationally efficient. Therefore, it is suitable for large-scale prediction of complex spatio-temporal processes. We apply our method to monthly PM2.5 data at more than 200,000 space–time locations from January 1999 to December 2022 for fast imputation of missing values and forecasts with uncertainties.

高斯过程和克里格方法在传统的时空建模和预测中得到了广泛的应用。这些技术通常假设数据是从具有参数协方差结构的平稳GP中观察到的。然而,现实应用中的过程往往表现出非高斯性和非平稳性。此外,GP的基于似然的推理在计算上是昂贵的,因此对于大型数据集来说是禁止的。在本文中,我们提出了一种基于深度神经网络(DNN)的两阶段时空插值和预测模型。在第一步中执行插值,该步骤利用依赖DNN,嵌入层由时空基函数构建。对于第二阶段,我们使用长短期记忆(LSTM)和卷积LSTM来预测给定位置的未来观测结果。我们在DNN中采用了基于分位数的损失函数来提供概率预测。与克里格方法相比,该方法不需要指定协方差函数或进行平稳性假设,计算效率高。因此,它适用于复杂时空过程的大规模预测。我们将我们的方法应用于1999年1月至2022年12月20多万个时空位置的月度PM2.5数据,以快速估算缺失值和不确定性预测。
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引用次数: 0
期刊
Spatial Statistics
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