I am writing in response to the article “Plasma concentration of thrombopoietin in dogs with immune thrombocytopenia” published in JVIM Early View on August 14, 2024. The authors conclude that “Plasma TPO concentration is paradoxically low at diagnosis for most dogs with pITP,” and that “This finding suggests that ineffective thrombopoiesis contributes to thrombocytopenia in pITP dogs and supports evaluating TPO receptor agonist treatment as used for pITP in humans.” I believe several key deficiencies in the TPO ELISA validation process described should be addressed before these statements can be accurately made. First, the sample matrix used in the spike-and-recovery experiment was comprised of pooled cryopoor plasma from healthy dogs and assay buffer. It is reasonable to assume that the pooled plasma contained endogenous TPO, however, the amount was not quantified. As such, it is not possible to determine whether the recovery of recombinant and endogenous TPO behaves in an additive (linear) or non-linear manner. If the relationship is non-linear, the spike-and-recovery experiment is not valid.1 Second, plasma from the dogs with pITP may have contained interfering compounds (eg, inflammatory cytokines and growth factors2) that were not present or were present at a different concentration in the pooled healthy dog plasma. The authors acknowledge that they “do not know if the assay potentially cross-reacts with (these compounds).” Binding of these compounds with capture/detection reagents or TPO may have impaired the detection of TPO in dogs with pITP,3 potentially resulting in an erroneous conclusion.
Both of these problems could be overcome with a simple parallelism experiment, which would involve plotting measured TPO against various dilutions of pITP serum, and comparing these curves against the standard curve generated from serial dilutions of recombinant TPO in the sample matrix. Comparing the degree of “parallelism” between the curves would allow the relative accuracy of the ELISA in pITP serum to be assessed, as well as its selectivity and sensitivity.3 Other methods of validation could include the depletion of endogenous TPO from the pooled healthy plasma using an anti-recombinant TPO antibody, and the addition of various cytokines and growth factors to the assay buffer during the spike-and-recovery experiment. All three of these methods were used to validate the first human TPO ELISA.4
我写这封信是为了回应2024年8月14日发表在JVIM Early View上的文章“免疫血小板减少症犬的血凝素浓度”。作者得出结论:“在大多数患有pITP的狗的诊断中,血浆TPO浓度很低”,并且“这一发现表明,无效的血小板生成有助于pITP狗的血小板减少症,并支持评估用于人类pITP的TPO受体激动剂治疗。”我认为,在准确地做出这些陈述之前,应该解决所描述的TPO ELISA验证过程中的几个关键缺陷。首先,在尖峰回收实验中使用的样品基质由健康狗的低温血浆和实验缓冲液组成。我们有理由认为,汇集的血浆中含有内源性TPO,但其含量并未被量化。因此,不可能确定重组和内源性TPO的恢复是否以加性(线性)或非线性方式表现。如果关系是非线性的,峰值-恢复实验是无效的其次,患有pITP的狗的血浆中可能含有干扰化合物(如炎症细胞因子和生长因子),这些化合物在健康狗的血浆中不存在或以不同的浓度存在。作者承认,他们“不知道该分析是否可能与(这些化合物)发生交叉反应。”这些化合物与捕获/检测试剂或TPO结合可能会损害对患有pITP的狗的TPO的检测,3可能导致错误的结论。这两个问题都可以通过一个简单的平行实验来解决,该实验包括绘制不同稀释度的pITP血清中测量的TPO,并将这些曲线与样品基质中重组TPO的一系列稀释产生的标准曲线进行比较。比较曲线之间的“平行”程度将允许评估ELISA在pITP血清中的相对准确性,以及它的选择性和敏感性其他验证方法包括使用抗重组TPO抗体从汇总的健康血浆中消耗内源性TPO,以及在峰值-恢复实验中向测定缓冲液中添加各种细胞因子和生长因子。所有这三种方法都被用于验证第一个人TPO elisa
{"title":"Letter regarding “Plasma concentration of thrombopoietin in dogs with immune thrombocytopenia”","authors":"Matthew K. Wun","doi":"10.1111/jvim.17244","DOIUrl":"10.1111/jvim.17244","url":null,"abstract":"<p>I am writing in response to the article “Plasma concentration of thrombopoietin in dogs with immune thrombocytopenia” published in JVIM Early View on August 14, 2024. The authors conclude that “Plasma TPO concentration is paradoxically low at diagnosis for most dogs with pITP,” and that “This finding suggests that ineffective thrombopoiesis contributes to thrombocytopenia in pITP dogs and supports evaluating TPO receptor agonist treatment as used for pITP in humans.” I believe several key deficiencies in the TPO ELISA validation process described should be addressed before these statements can be accurately made. First, the sample matrix used in the spike-and-recovery experiment was comprised of pooled cryopoor plasma from healthy dogs and assay buffer. It is reasonable to assume that the pooled plasma contained endogenous TPO, however, the amount was not quantified. As such, it is not possible to determine whether the recovery of recombinant and endogenous TPO behaves in an additive (linear) or non-linear manner. If the relationship is non-linear, the spike-and-recovery experiment is not valid.<span><sup>1</sup></span> Second, plasma from the dogs with pITP may have contained interfering compounds (eg, inflammatory cytokines and growth factors<span><sup>2</sup></span>) that were not present or were present at a different concentration in the pooled healthy dog plasma. The authors acknowledge that they “do not know if the assay potentially cross-reacts with (these compounds).” Binding of these compounds with capture/detection reagents or TPO may have impaired the detection of TPO in dogs with pITP,<span><sup>3</sup></span> potentially resulting in an erroneous conclusion.</p><p>Both of these problems could be overcome with a simple parallelism experiment, which would involve plotting measured TPO against various dilutions of pITP serum, and comparing these curves against the standard curve generated from serial dilutions of recombinant TPO in the sample matrix. Comparing the degree of “parallelism” between the curves would allow the relative accuracy of the ELISA in pITP serum to be assessed, as well as its selectivity and sensitivity.<span><sup>3</sup></span> Other methods of validation could include the depletion of endogenous TPO from the pooled healthy plasma using an anti-recombinant TPO antibody, and the addition of various cytokines and growth factors to the assay buffer during the spike-and-recovery experiment. All three of these methods were used to validate the first human TPO ELISA.<span><sup>4</sup></span></p>","PeriodicalId":49958,"journal":{"name":"Journal of Veterinary Internal Medicine","volume":"39 1","pages":""},"PeriodicalIF":2.1,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11627514/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142785718","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marjory B. Brooks, James C. Brooks, Jim Catalfamo, Yao Zhu, Robert Goggs, Susanna Babasyan, Bettina Wagner, Dana H. LeVine
We appreciate Dr. Wun's interest in our article and the opportunity to clarify the thrombopoietin assay's configuration. Dr. Wun raises a concern regarding the addition of cryopoor plasma to the canine plasma samples. There was no addition of cryopoor plasma to any of the canine plasma samples, including plasma from healthy dogs, ITP dogs, or spike-and-recovery plasmas. All canine plasma samples were diluted in assay buffer alone. Rather, the assay standards and blanks were diluted in assay buffer containing cryopoor plasma. The composition of the diluents is stated in the manuscript section 3.3 “ELISA development and optimization: To minimize effects of high background absorbance values associated with plasma proteins, standards and blanks were diluted in 1 part canine pooled cryopoor plasma added to 4 parts assay buffer. Test plasma samples were diluted in assay buffer without addition of cryopoor plasma.”
The addition of cryopoor plasma to the standard curve diluent corrected for high absorbance values consistently observed in canine plasma, considered a “matrix” effect.1 Because the content of TPO in the cryopoor plasma was unknown, the assay was configured with “blank” wells containing only cryopoor plasma in buffer to account for any canine TPO present in this matrix. All OD readings were then adjusted based on the blank OD (stated in section 3.3 “The mean absorbance value of the blank wells was subtracted from all standard and test sample wells”). We recognize that this correction may preclude quantitation of low TPO concentrations in test samples and acknowledged this limitation in the manuscript's discussion. “Our assay lacks precision at low TPO concentrations. The assay cannot accurately quantitate plasma TPO concentrations below approximately 60 pg/mL.”
Dr. Wun also mentions non-additive TPO recovery and signal quenching by plasma interferents. Quantitative rcTPO recovery (buffer with cryopoor plasma) is depicted in Figure 2, with sample raw OD values and calculated TPO concentrations included as Supplemental Figure 4. The mean spike-in recoveries of rcTPO (buffer with canine plasma) ranged from 87.5% (200 pg/mL) to 84% (800 pg/mL) with reproducibility for replicate determinations summarized in section 3.5 “TPO performance characteristics.”
We believe, within the assay's stated limitations, that the described TPO ELISA will be useful for studying thrombopoietic response in dogs with ITP and bone marrow disorders.
{"title":"Response to letter regarding “Plasma concentration of thrombopoietin in dogs with immune thrombocytopenia”","authors":"Marjory B. Brooks, James C. Brooks, Jim Catalfamo, Yao Zhu, Robert Goggs, Susanna Babasyan, Bettina Wagner, Dana H. LeVine","doi":"10.1111/jvim.17245","DOIUrl":"10.1111/jvim.17245","url":null,"abstract":"<p>We appreciate Dr. Wun's interest in our article and the opportunity to clarify the thrombopoietin assay's configuration. Dr. Wun raises a concern regarding the addition of cryopoor plasma to the canine plasma samples. There was no addition of cryopoor plasma to any of the canine plasma samples, including plasma from healthy dogs, ITP dogs, or spike-and-recovery plasmas. All canine plasma samples were diluted in assay buffer alone. Rather, the assay standards and blanks were diluted in assay buffer containing cryopoor plasma. The composition of the diluents is stated in the manuscript section 3.3 “ELISA development and optimization: <i>To minimize effects of high background absorbance values associated with plasma proteins, standards and blanks were diluted in 1 part canine pooled cryopoor plasma added to 4 parts assay buffer. Test plasma samples were diluted in assay buffer without addition of cryopoor plasma</i>.”</p><p>The addition of cryopoor plasma to the standard curve diluent corrected for high absorbance values consistently observed in canine plasma, considered a “matrix” effect.<span><sup>1</sup></span> Because the content of TPO in the cryopoor plasma was unknown, the assay was configured with “blank” wells containing only cryopoor plasma in buffer to account for any canine TPO present in this matrix. All OD readings were then adjusted based on the blank OD (stated in section 3.3 “<i>The mean absorbance value of the blank wells was subtracted from all standard and test sample wells</i>”). We recognize that this correction may preclude quantitation of low TPO concentrations in test samples and acknowledged this limitation in the manuscript's discussion. “<i>Our assay lacks precision at low TPO concentrations. The assay cannot accurately quantitate plasma TPO concentrations below approximately 60 pg/mL</i>.”</p><p>Dr. Wun also mentions non-additive TPO recovery and signal quenching by plasma interferents. Quantitative rcTPO recovery (buffer with cryopoor plasma) is depicted in Figure 2, with sample raw OD values and calculated TPO concentrations included as Supplemental Figure 4. The mean spike-in recoveries of rcTPO (buffer with canine plasma) ranged from 87.5% (200 pg/mL) to 84% (800 pg/mL) with reproducibility for replicate determinations summarized in section 3.5 “TPO performance characteristics.”</p><p>We believe, within the assay's stated limitations, that the described TPO ELISA will be useful for studying thrombopoietic response in dogs with ITP and bone marrow disorders.</p>","PeriodicalId":49958,"journal":{"name":"Journal of Veterinary Internal Medicine","volume":"39 1","pages":""},"PeriodicalIF":2.1,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11627512/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142786008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
I am writing in response to the article “Peripheral and intestinal T lymphocyte subsets in dogs with chronic inflammatory enteropathy” published in Issue 3, Volume 38 of JVIM. It is stated by the authors that the Wilcoxon's signed rank test was used to compare quantitative and ordinal qualitative variables between the healthy control group and the chronic inflammatory enteropathy group. As these groups are independent, the assumption of paired samples required for the use of Wilcoxon's signed rank test is not met and the results reported are therefore invalid. I am wondering if the data could be re-analyzed using the Mann-Whitney U-test, which is the appropriate statistical test for non-parametric ratio and ordinal data.1
{"title":"Letter regarding “Peripheral and intestinal T lymphocyte subsets in dogs with chronic inflammatory enteropathy”","authors":"Matthew K. Wun","doi":"10.1111/jvim.17260","DOIUrl":"10.1111/jvim.17260","url":null,"abstract":"<p>I am writing in response to the article “Peripheral and intestinal T lymphocyte subsets in dogs with chronic inflammatory enteropathy” published in Issue 3, Volume 38 of JVIM. It is stated by the authors that the Wilcoxon's signed rank test was used to compare quantitative and ordinal qualitative variables between the healthy control group and the chronic inflammatory enteropathy group. As these groups are independent, the assumption of paired samples required for the use of Wilcoxon's signed rank test is not met and the results reported are therefore invalid. I am wondering if the data could be re-analyzed using the Mann-Whitney <i>U</i>-test, which is the appropriate statistical test for non-parametric ratio and ordinal data.<span><sup>1</sup></span></p>","PeriodicalId":49958,"journal":{"name":"Journal of Veterinary Internal Medicine","volume":"39 1","pages":""},"PeriodicalIF":2.1,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11627507/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142785587","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Understanding and correctly interpreting statistical results presented in scientific articles is a required skill for practicing evidence-based veterinary medicine. A prerequisite for doing so is the adequate reporting of the results in scientific journals. However, most authors of veterinary publications determine the importance of their findings based on statistical significance (ie, P < .05), indicating that neither the limitations of using P values for inference nor the existence of more appropriate alternatives are widely appreciated in veterinary medicine. This deficiency in knowledge indicates a need to increase awareness in veterinary medicine regarding reporting statistical measures that quantify the magnitude of an effect along with its level of uncertainty, and then interpreting these results for clinical decision making. We utilize a hypothetical randomized controlled trial of dietary management in cats with chronic kidney disease to discuss some common misconceptions about P values and provide practical suggestions for alternatives. Reporting appropriate effect estimates along with their confidence intervals will allow veterinarians to easily and correctly determine whether the magnitude of the effect of interest meets clinical needs while acknowledging uncertainty in the results. We also describe confidence interval functions and show their utility as visual tools in aiding interpretation of confidence intervals. By providing practical guidance, we show that a change in reporting and interpreting statistical results is feasible and necessary. We hope this crucial step will promote clinical decision making based on effect estimates and confidence intervals.
{"title":"Reporting and interpreting statistical results in veterinary medicine: Calling for change","authors":"Hsin-Yi Weng, Locksley L. McV. Messam","doi":"10.1111/jvim.17258","DOIUrl":"10.1111/jvim.17258","url":null,"abstract":"<p>Understanding and correctly interpreting statistical results presented in scientific articles is a required skill for practicing evidence-based veterinary medicine. A prerequisite for doing so is the adequate reporting of the results in scientific journals. However, most authors of veterinary publications determine the importance of their findings based on statistical significance (ie, <i>P</i> < .05), indicating that neither the limitations of using <i>P</i> values for inference nor the existence of more appropriate alternatives are widely appreciated in veterinary medicine. This deficiency in knowledge indicates a need to increase awareness in veterinary medicine regarding reporting statistical measures that quantify the magnitude of an effect along with its level of uncertainty, and then interpreting these results for clinical decision making. We utilize a hypothetical randomized controlled trial of dietary management in cats with chronic kidney disease to discuss some common misconceptions about <i>P</i> values and provide practical suggestions for alternatives. Reporting appropriate effect estimates along with their confidence intervals will allow veterinarians to easily and correctly determine whether the magnitude of the effect of interest meets clinical needs while acknowledging uncertainty in the results. We also describe confidence interval functions and show their utility as visual tools in aiding interpretation of confidence intervals. By providing practical guidance, we show that a change in reporting and interpreting statistical results is feasible and necessary. We hope this crucial step will promote clinical decision making based on effect estimates and confidence intervals.</p>","PeriodicalId":49958,"journal":{"name":"Journal of Veterinary Internal Medicine","volume":"39 1","pages":""},"PeriodicalIF":2.1,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11638125/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142770208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}