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CUQIpy: II. Computational uncertainty quantification for PDE-based inverse problems in Python CUQIpy:II.用 Python 对基于 PDE 的逆问题进行计算不确定性量化
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-03-04 DOI: 10.1088/1361-6420/ad22e8
Amal M A Alghamdi, Nicolai A B Riis, Babak M Afkham, Felipe Uribe, Silja L Christensen, Per Christian Hansen, Jakob S Jørgensen
Inverse problems, particularly those governed by Partial Differential Equations (PDEs), are prevalent in various scientific and engineering applications, and uncertainty quantification (UQ) of solutions to these problems is essential for informed decision-making. This second part of a two-paper series builds upon the foundation set by the first part, which introduced CUQIpy, a Python software package for computational UQ in inverse problems using a Bayesian framework. In this paper, we extend CUQIpy’s capabilities to solve PDE-based Bayesian inverse problems through a general framework that allows the integration of PDEs in CUQIpy, whether expressed natively or using third-party libraries such as FEniCS. CUQIpy offers concise syntax that closely matches mathematical expressions, streamlining the modeling process and enhancing the user experience. The versatility and applicability of CUQIpy to PDE-based Bayesian inverse problems are demonstrated on examples covering parabolic, elliptic and hyperbolic PDEs. This includes problems involving the heat and Poisson equations and application case studies in electrical impedance tomography and photo-acoustic tomography, showcasing the software’s efficiency, consistency, and intuitive interface. This comprehensive approach to UQ in PDE-based inverse problems provides accessibility for non-experts and advanced features for experts.
逆问题,尤其是由偏微分方程(PDE)控制的逆问题,在各种科学和工程应用中十分普遍,而这些问题的解决方案的不确定性量化(UQ)对于明智决策至关重要。本文是两篇系列论文的第二部分,建立在第一部分所奠定的基础之上。第一部分介绍了 CUQIpy,这是一个使用贝叶斯框架计算逆问题不确定性量化的 Python 软件包。在本文中,我们通过一个通用框架扩展了 CUQIpy 的功能,使其能够解决基于 PDE 的贝叶斯逆问题,该框架允许在 CUQIpy 中集成 PDE,无论是本机表达还是使用第三方库(如 FEniCS)表达。CUQIpy 提供与数学表达式密切匹配的简洁语法,简化了建模过程并增强了用户体验。CUQIpy 在基于 PDE 的贝叶斯逆问题上的多功能性和适用性在抛物线、椭圆和双曲 PDE 的示例中得到了证明。其中包括涉及热方程和泊松方程的问题,以及电阻抗层析成像和光声学层析成像的应用案例研究,展示了该软件的效率、一致性和直观界面。这种基于 PDE 逆问题的 UQ 综合方法为非专业人员提供了易用性,为专家提供了高级功能。
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引用次数: 0
CUQIpy: I. Computational uncertainty quantification for inverse problems in Python CUQIpy:I. 用 Python 计算逆问题的不确定性量化
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-03-04 DOI: 10.1088/1361-6420/ad22e7
Nicolai A B Riis, Amal M A Alghamdi, Felipe Uribe, Silja L Christensen, Babak M Afkham, Per Christian Hansen, Jakob S Jørgensen
This paper introduces CUQIpy, a versatile open-source Python package for computational uncertainty quantification (UQ) in inverse problems, presented as Part I of a two-part series. CUQIpy employs a Bayesian framework, integrating prior knowledge with observed data to produce posterior probability distributions that characterize the uncertainty in computed solutions to inverse problems. The package offers a high-level modeling framework with concise syntax, allowing users to easily specify their inverse problems, prior information, and statistical assumptions. CUQIpy supports a range of efficient sampling strategies and is designed to handle large-scale problems. Notably, the automatic sampler selection feature analyzes the problem structure and chooses a suitable sampler without user intervention, streamlining the process. With a selection of probability distributions, test problems, computational methods, and visualization tools, CUQIpy serves as a powerful, flexible, and adaptable tool for UQ in a wide selection of inverse problems. Part II of the series focuses on the use of CUQIpy for UQ in inverse problems with partial differential equations.
本文介绍了 CUQIpy,这是一个用于逆问题计算不确定性量化(UQ)的通用开源 Python 软件包,是两部分系列文章的第一部分。CUQIpy 采用贝叶斯框架,将先验知识与观测数据相结合,生成后验概率分布,描述逆问题计算解的不确定性。该软件包提供了一个具有简洁语法的高级建模框架,允许用户轻松指定他们的逆问题、先验信息和统计假设。CUQIpy 支持一系列高效的采样策略,旨在处理大规模问题。值得注意的是,自动采样器选择功能可分析问题结构并选择合适的采样器,无需用户干预,从而简化了流程。CUQIpy 有多种概率分布、测试问题、计算方法和可视化工具可供选择,是一款功能强大、灵活且适应性强的 UQ 工具,适用于多种逆问题。本系列的第二部分重点介绍 CUQIpy 在偏微分方程反问题中的 UQ 应用。
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引用次数: 0
Restoring the discontinuous heat equation source using sparse boundary data and dynamic sensors 利用稀疏边界数据和动态传感器恢复不连续热方程源
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-03-01 DOI: 10.1088/1361-6420/ad2904
Guang Lin, Na Ou, Zecheng Zhang, Zhidong Zhang
This study focuses on addressing the inverse source problem associated with the parabolic equation. We rely on sparse boundary flux data as our measurements, which are acquired from a restricted section of the boundary. While it has been established that utilizing sparse boundary flux data can enable source recovery, the presence of a limited number of observation sensors poses a challenge for accurately tracing the inverse quantity of interest. To overcome this limitation, we introduce a sampling algorithm grounded in Langevin dynamics that incorporates dynamic sensors to capture the flux information. Furthermore, we propose and discuss two distinct dynamic sensor migration strategies. Remarkably, our findings demonstrate that even with only two observation sensors at our disposal, it remains feasible to successfully reconstruct the high-dimensional unknown parameters.
本研究的重点是解决与抛物线方程相关的逆源问题。我们依靠稀疏边界通量数据进行测量,这些数据是从边界的有限部分获取的。虽然利用稀疏边界通量数据可以实现源恢复,但有限数量的观测传感器对准确追踪感兴趣的逆量构成了挑战。为了克服这一限制,我们引入了一种基于朗之文动力学的采样算法,该算法结合了动态传感器来捕捉通量信息。此外,我们还提出并讨论了两种不同的动态传感器迁移策略。值得注意的是,我们的研究结果表明,即使只有两个观测传感器,我们仍然可以成功地重建高维未知参数。
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引用次数: 0
Quantitative passive imaging by iterative holography: the example of helioseismic holography 通过迭代全息技术进行定量被动成像:日震全息技术实例
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-03-01 DOI: 10.1088/1361-6420/ad2b9a
Björn Müller, Thorsten Hohage, Damien Fournier, Laurent Gizon
In passive imaging, one attempts to reconstruct some coefficients in a wave equation from correlations of observed randomly excited solutions to this wave equation. Many methods proposed for this class of inverse problem so far are only qualitative, e.g. trying to identify the support of a perturbation. Major challenges are the increase in dimensionality when computing correlations from primary data in a preprocessing step, and often very poor pointwise signal-to-noise ratios. In this paper, we propose an approach that addresses both of these challenges: it works only on the primary data while implicitly using the full information contained in the correlation data, and it provides quantitative estimates and convergence by iteration. Our work is motivated by helioseismic holography, a well-established imaging method to map heterogenities and flows in the solar interior. We show that the back-propagation used in classical helioseismic holography can be interpreted as the adjoint of the Fréchet derivative of the operator which maps the properties of the solar interior to the correlation data on the solar surface. The theoretical and numerical framework for passive imaging problems developed in this paper extends helioseismic holography to nonlinear problems and allows for quantitative reconstructions. We present a proof of concept in uniform media.
在被动成像中,人们试图从观测到的波方程随机激发解的相关性中重建波方程中的某些系数。迄今为止,针对这类逆问题提出的许多方法都只是定性的,例如,试图确定扰动的支持度。面临的主要挑战是,在预处理步骤中计算原始数据的相关性时,维度会增加,而且点信噪比往往很低。在本文中,我们提出了一种解决这两个难题的方法:它只适用于原始数据,同时隐含地使用相关数据中包含的全部信息,并通过迭代提供定量估计和收敛。我们的工作源于日震全息法,这是一种用于绘制太阳内部异质性和流动图的成熟成像方法。我们的研究表明,经典的日震全息法中使用的反向传播可以解释为将太阳内部特性映射到太阳表面相关数据的算子的弗雷谢特导数的邻接。本文针对被动成像问题开发的理论和数值框架将日震全息法扩展到非线性问题,并允许定量重建。我们提出了在均匀介质中的概念验证。
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引用次数: 0
Increasing stability of a linearized inverse boundary value problem for a nonlinear Schrödinger equation on transversally anisotropic manifolds 横向各向异性流形上非线性薛定谔方程线性化反边界值问题的稳定性增强
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-02-23 DOI: 10.1088/1361-6420/ad2533
Shuai Lu, Jian Zhai
We consider the problem of recovering a nonlinear potential function in a nonlinear Schrödinger equation on transversally anisotropic manifolds from the linearized Dirichlet-to-Neumann map at a large wavenumber. By calibrating the complex geometric optics solutions according to the wavenumber, we prove the increasing stability of recovering the coefficient of a cubic term as the wavenumber becomes large.
我们考虑的问题是,在横向各向异性流形上,从线性化的狄利克特到诺伊曼映射中恢复非线性薛定谔方程中的非线性势函数。通过根据波长校准复几何光学解,我们证明了随着波长变大,恢复立方项系数的稳定性不断增强。
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引用次数: 0
Adaptive anisotropic Bayesian meshing for inverse problems 逆问题的自适应各向异性贝叶斯网格划分
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-02-23 DOI: 10.1088/1361-6420/ad2696
A Bocchinfuso, D Calvetti, E Somersalo
We consider inverse problems estimating distributed parameters from indirect noisy observations through discretization of continuum models described by partial differential or integral equations. It is well understood that errors arising from the discretization can be detrimental for ill-posed inverse problems, as discretization error behaves as correlated noise. While this problem can be avoided with a discretization fine enough to decrease the modeling error level below that of the exogenous noise that is addressed, e.g. by regularization, the computational resources needed to deal with the additional degrees of freedom may increase so much as to require high performance computing environments. Following an earlier idea, we advocate the notion of the discretization as one of the unknowns of the inverse problem, which is updated iteratively together with the solution. In this approach, the discretization, defined in terms of an underlying metric, is refined selectively only where the representation power of the current mesh is insufficient. In this paper we allow the metrics and meshes to be anisotropic, and we show that this leads to significant reduction of memory allocation and computing time.
我们考虑的逆问题是,通过对偏微分方程或积分方程描述的连续模型进行离散化,从间接噪声观测中估计分布参数。众所周知,离散化产生的误差会对问题不明确的逆问题产生不利影响,因为离散化误差表现为相关噪声。虽然可以通过精细离散化(例如正则化)来避免这一问题,从而将建模误差水平降至低于外生噪声的水平,但处理额外自由度所需的计算资源可能会大幅增加,以至于需要高性能计算环境。按照早先的想法,我们主张将离散化作为逆问题的未知数之一,与解一起迭代更新。在这种方法中,只有在当前网格的表示能力不足时,才会有选择性地细化离散化,而离散化是根据基本度量定义的。在本文中,我们允许度量和网格是各向异性的,并证明这将显著减少内存分配和计算时间。
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引用次数: 0
A Bayesian approach for consistent reconstruction of inclusions 用贝叶斯方法重建内含物的一致性
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-02-23 DOI: 10.1088/1361-6420/ad2531
B M Afkham, K Knudsen, A K Rasmussen, T Tarvainen
This paper considers a Bayesian approach for inclusion detection in nonlinear inverse problems using two known and popular push-forward prior distributions: the star-shaped and level set prior distributions. We analyze the convergence of the corresponding posterior distributions in a small measurement noise limit. The methodology is general; it works for priors arising from any Hölder continuous transformation of Gaussian random fields and is applicable to a range of inverse problems. The level set and star-shaped prior distributions are examples of push-forward priors under Hölder continuous transformations that take advantage of the structure of inclusion detection problems. We show that the corresponding posterior mean converges to the ground truth in a proper probabilistic sense. Numerical tests on a two-dimensional quantitative photoacoustic tomography problem showcase the approach. The results highlight the convergence properties of the posterior distributions and the ability of the methodology to detect inclusions with sufficiently regular boundaries.
本文研究了一种贝叶斯方法,该方法利用两种已知且流行的前推先验分布:星形先验分布和水平集先验分布,对非线性逆问题中的包含性进行检测。我们分析了相应后验分布在小测量噪声极限下的收敛性。该方法是通用的;它适用于高斯随机场的任何赫尔德连续变换所产生的先验,并适用于一系列逆问题。水平集和星形先验分布是霍尔德连续变换下的前推先验的例子,它们利用了包含检测问题的结构。我们证明,相应的后验均值在适当的概率意义上收敛于地面实况。一个二维定量光声层析成像问题的数值测试展示了这种方法。结果凸显了后验分布的收敛特性,以及该方法检测具有足够规则边界的夹杂物的能力。
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引用次数: 0
Imaging of nonlinear materials via the Monotonicity Principle 通过单调性原理成像非线性材料
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-02-13 DOI: 10.1088/1361-6420/ad22e9
Vincenzo Mottola, Antonio Corbo Esposito, Gianpaolo Piscitelli, Antonello Tamburrino
Inverse problems, which are related to Maxwell’s equations, in the presence of nonlinear materials is a quite new topic in the literature. The lack of contributions in this area can be ascribed to the significant challenges that such problems pose. Retrieving the spatial behavior of some unknown physical property, from boundary measurements, is a nonlinear and highly ill-posed problem even in the presence of linear materials. Furthermore, this complexity grows exponentially in the presence of nonlinear materials. In the tomography of linear materials, the Monotonicity Principle (MP) is the foundation of a class of non-iterative algorithms able to guarantee excellent performances and compatibility with real-time applications. Recently, the MP has been extended to nonlinear materials under very general assumptions. Starting from the theoretical background for this extension, we develop a first real-time inversion method for the inverse obstacle problem in the presence of nonlinear materials. The proposed method is intendend for all problems governed by the quasilinear Laplace equation, i.e. static problems involving nonlinear materials. In this paper, we provide some preliminary results which give the foundation of our method and some extended numerical examples.
在非线性材料存在的情况下,与麦克斯韦方程相关的逆问题在文献中是一个相当新的课题。这一领域的研究成果不多,可能是因为这类问题带来了巨大的挑战。即使在线性材料存在的情况下,从边界测量中检索某些未知物理特性的空间行为,也是一个非线性和高难度问题。此外,在存在非线性材料的情况下,这种复杂性还会呈指数级增长。在线性材料层析成像中,单调性原理(MP)是一类非迭代算法的基础,能够保证卓越的性能和与实时应用的兼容性。最近,MP 在非常一般的假设条件下扩展到了非线性材料。从这一扩展的理论背景出发,我们开发了第一种非线性材料存在时的反障碍问题实时反演方法。所提出的方法适用于所有受准线性拉普拉斯方程控制的问题,即涉及非线性材料的静态问题。本文提供了一些初步结果,为我们的方法奠定了基础,并提供了一些扩展的数值示例。
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引用次数: 0
Multilevel dimension-independent likelihood-informed MCMC for large-scale inverse problems 用于大规模逆问题的多层次维度独立似然信息 MCMC
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-02-05 DOI: 10.1088/1361-6420/ad1e2c
Tiangang Cui, Gianluca Detommaso, Robert Scheichl
We present a non-trivial integration of dimension-independent likelihood-informed (DILI) MCMC (Cui et al 2016) and the multilevel MCMC (Dodwell et al 2015) to explore the hierarchy of posterior distributions. This integration offers several advantages: First, DILI-MCMC employs an intrinsic likelihood-informed subspace (LIS) (Cui et al 2014)—which involves a number of forward and adjoint model simulations—to design accelerated operator-weighted proposals. By exploiting the multilevel structure of the discretised parameters and discretised forward models, we design a Rayleigh–Ritz procedure to significantly reduce the computational effort in building the LIS and operating with DILI proposals. Second, the resulting DILI-MCMC can drastically improve the sampling efficiency of MCMC at each level, and hence reduce the integration error of the multilevel algorithm for fixed CPU time. Numerical results confirm the improved computational efficiency of the multilevel DILI approach.
我们提出了一种与维度无关的似然信息(DILI)MCMC(Cui 等人,2016 年)和多级 MCMC(Dodwell 等人,2015 年)的非难整合,以探索后验分布的层次结构。这种整合具有几个优势:首先,DILI-MCMC 采用内在似然信息子空间(LIS)(Cui 等人,2014 年)--其中涉及大量前向和邻接模型模拟--来设计加速算子加权建议。通过利用离散参数和离散前向模型的多层次结构,我们设计了一种 Rayleigh-Ritz 程序,以显著减少构建 LIS 和使用 DILI 建议的计算量。其次,由此产生的 DILI-MCMC 可以大幅提高各层次 MCMC 的采样效率,从而在 CPU 时间固定的情况下降低多层次算法的积分误差。数值结果证实了多级 DILI 方法提高了计算效率。
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引用次数: 0
Fourier series-based approximation of time-varying parameters in ordinary differential equations 基于傅里叶级数的常微分方程时变参数近似法
IF 2.1 2区 数学 Q1 MATHEMATICS, APPLIED Pub Date : 2024-02-01 DOI: 10.1088/1361-6420/ad1fe5
Anna Fitzpatrick, Molly Folino, Andrea Arnold
Many real-world systems modeled using differential equations involve unknown or uncertain parameters. Standard approaches to address parameter estimation inverse problems in this setting typically focus on estimating constants; yet some unobservable system parameters may vary with time without known evolution models. In this work, we propose a novel approximation method inspired by the Fourier series to estimate time-varying parameters (TVPs) in deterministic dynamical systems modeled with ordinary differential equations. Using ensemble Kalman filtering in conjunction with Fourier series-based approximation models, we detail two possible implementation schemes for sequentially updating the time-varying parameter estimates given noisy observations of the system states. We demonstrate the capabilities of the proposed approach in estimating periodic parameters, both when the period is known and unknown, as well as non-periodic TVPs of different forms with several computed examples using a forced harmonic oscillator. Results emphasize the importance of the frequencies and number of approximation model terms on the time-varying parameter estimates and corresponding dynamical system predictions.
现实世界中许多使用微分方程建模的系统都涉及未知或不确定参数。在这种情况下,解决参数估计逆问题的标准方法通常侧重于估计常数;然而,在没有已知演化模型的情况下,一些不可观测的系统参数可能会随时间变化。在这项工作中,我们受傅立叶级数的启发,提出了一种新的近似方法,用于估计以常微分方程建模的确定性动态系统中的时变参数(TVPs)。我们将集合卡尔曼滤波与基于傅立叶级数的近似模型结合使用,详细介绍了两种可能的实施方案,用于在对系统状态进行噪声观测的情况下顺序更新时变参数估计。我们通过几个使用受迫谐波振荡器的计算实例,展示了所提方法在估计周期参数(包括已知和未知周期)以及不同形式的非周期性 TVP 方面的能力。结果强调了近似模型项的频率和数量对时变参数估计和相应动力系统预测的重要性。
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引用次数: 0
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Inverse Problems
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