首页 > 最新文献

Current Research in Biotechnology最新文献

英文 中文
Comparison study on ammonia recovery from anaerobic digestion slurry by different biochar: Focusing on the effect of feedstock, pyrolysis temperature, and particle size 不同生物炭从厌氧消化泥浆中回收氨的比较研究:关注原料、热解温度和粒度的影响
IF 5.6 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100218
Peiyu Feng , Hailin Tian , Dongdong Zhang , Dandan Gao , Wenxia Tan , Qian Tan

Treating anaerobic digestion (AD) slurry as industrial wastewater not only consumes a significant amount of energy but also wastes its inherent abundant nutrients, particularly the high ammonium content. Ammonia recovery from AD slurry has attracted attention in recent years and biochar has tentatively been used to adsorb ammonia nitrogen. However, most of the previous studies used pure ammonium chloride solution to simulate ammonia-rich wastewater and ignored the influence of other components. Furthermore, how the physico-chemical properties of biochar influence the adsorption performance of ammonia in AD slurry remains unknown. Therefore, this study focused on the investigation of the adsorption behavior of different types of biochar to ammonia nitrogen in AD slurry. Biochar generated from rice straw, coconut shell, and wood shaving under pyrolysis temperatures of 300 °C, 500 °C, and 700 °C were used to adsorb ammonia from food waste (FW) AD slurry, and five different particle sizes of biochar were also tested. The results showed that biochar derived from rice straw (up to 9.44 mg/g) and coconut shell (up to 8.86 mg/g) had higher ammonium adsorption capacity than biochar derived from wood shaving (up to 5.13 mg/g). Moreover, low pyrolysis temperature resulted in high adsorption capacity, while particle size and surface area of the biochar were not the critical factors determining the adsorption capacity. The correlation results demonstrated that the H/C (aromaticity), O/C (hydrophilicity), pH, electrical conductivity (EC), and ash content influenced the adsorption significantly. Based on the kinetics model results, it seems that physical adsorption was the main adsorption mechanism, while ion exchange and reaction with function groups also contributed to the adsorption. Moreover, the lower adsorption capacity was observed in this study where the real FW AD slurry was used as compared to other studies where pure ammonium chloride solution was used, which implied that microorganisms in FW AD slurry may colonize on the surface or pores of biochar, resulting in a negative effect on the adsorption capacity of biochar. The results derived from this study provided technical support for ammonia recovery of AD slurry.

将厌氧消化(AD)泥浆作为工业废水进行处理不仅会消耗大量能源,还会浪费其固有的丰富养分,尤其是高氨含量。近年来,从厌氧消化泥浆中回收氨引起了人们的关注,生物炭也被初步用于吸附氨氮。然而,以往的研究大多使用纯氯化铵溶液来模拟富含氨氮的废水,忽略了其他成分的影响。此外,生物炭的物理化学特性如何影响厌氧消化(AD)泥浆中氨氮的吸附性能仍是未知数。因此,本研究重点考察了不同类型的生物炭对厌氧发酵泥浆中氨氮的吸附行为。在 300 ℃、500 ℃ 和 700 ℃ 的热解温度下,利用稻草、椰壳和刨花产生的生物炭来吸附食物垃圾(FW)AD 泥浆中的氨氮,同时还测试了五种不同粒径的生物炭。结果表明,稻草(最高 9.44 毫克/克)和椰壳(最高 8.86 毫克/克)生物炭的氨吸附能力高于木屑(最高 5.13 毫克/克)生物炭。此外,低热解温度可产生高吸附容量,而生物炭的粒度和表面积并非决定吸附容量的关键因素。相关结果表明,H/C(芳香度)、O/C(亲水性)、pH 值、电导率(EC)和灰分含量对吸附有显著影响。根据动力学模型的结果,物理吸附似乎是主要的吸附机制,离子交换和与功能基团的反应也对吸附起了作用。此外,与其他使用纯氯化铵溶液的研究相比,本研究中使用真实 FW AD 泥浆的吸附能力较低,这意味着 FW AD 泥浆中的微生物可能会在生物炭表面或孔隙中定植,从而对生物炭的吸附能力产生负面影响。这项研究得出的结果为厌氧消化(AD)泥浆的氨回收提供了技术支持。
{"title":"Comparison study on ammonia recovery from anaerobic digestion slurry by different biochar: Focusing on the effect of feedstock, pyrolysis temperature, and particle size","authors":"Peiyu Feng ,&nbsp;Hailin Tian ,&nbsp;Dongdong Zhang ,&nbsp;Dandan Gao ,&nbsp;Wenxia Tan ,&nbsp;Qian Tan","doi":"10.1016/j.crbiot.2024.100218","DOIUrl":"10.1016/j.crbiot.2024.100218","url":null,"abstract":"<div><p>Treating anaerobic digestion (AD) slurry as industrial wastewater not only consumes a significant amount of energy but also wastes its inherent abundant nutrients, particularly the high ammonium content. Ammonia recovery from AD slurry has attracted attention in recent years and biochar has tentatively been used to adsorb ammonia nitrogen. However, most of the previous studies used pure ammonium chloride solution to simulate ammonia-rich wastewater and ignored the influence of other components. Furthermore, how the physico-chemical properties of biochar influence the adsorption performance of ammonia in AD slurry remains unknown. Therefore, this study focused on the investigation of the adsorption behavior of different types of biochar to ammonia nitrogen in AD slurry. Biochar generated from rice straw, coconut shell, and wood shaving under pyrolysis temperatures of 300 °C, 500 °C, and 700 °C were used to adsorb ammonia from food waste (FW) AD slurry, and five different particle sizes of biochar were also tested. The results showed that biochar derived from rice straw (up to 9.44 mg/g) and coconut shell (up to 8.86 mg/g) had higher ammonium adsorption capacity than biochar derived from wood shaving (up to 5.13 mg/g). Moreover, low pyrolysis temperature resulted in high adsorption capacity, while particle size and surface area of the biochar were not the critical factors determining the adsorption capacity. The correlation results demonstrated that the H/C (aromaticity), O/C (hydrophilicity), pH, electrical conductivity (EC), and ash content influenced the adsorption significantly. Based on the kinetics model results, it seems that physical adsorption was the main adsorption mechanism, while ion exchange and reaction with function groups also contributed to the adsorption. Moreover, the lower adsorption capacity was observed in this study where the real FW AD slurry was used as compared to other studies where pure ammonium chloride solution was used, which implied that microorganisms in FW AD slurry may colonize on the surface or pores of biochar, resulting in a negative effect on the adsorption capacity of biochar. The results derived from this study provided technical support for ammonia recovery of AD slurry.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":5.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262824000443/pdfft?md5=c6d6600378cc41d351bfe5dc3e3d83fe&pid=1-s2.0-S2590262824000443-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140785312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Therapeutic potential of lipopeptide biosurfactant-fabricated copper oxide nanoparticles: Mechanistic insight into their biocompatibility using zebra fish 脂肽生物表面活性剂制备的氧化铜纳米粒子的治疗潜力:利用斑马鱼从机理上了解其生物相容性
IF 5.6 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100227
Tamanna Bhuyan , Yugal Kishore Mohanta , Kaustuvmani Patowary , Surjendu Maity , Debasis Nayak , Kangkan Deka , K. Meenakshi Sundaram , Saravanan Muthupandian , Hemen Sarma

Nanoscale copper oxide (CuO NPs) with diameters in the 80–150 nm range has been biosynthesized using lipopeptide biosurfactant derived from Bacillus vallismortis and characterized by XRD and FE-SEM. The CuO NPs could be introduced as nanocarrier systems for combination therapy and a potential candidate for antibacterial, antioxidant, anticancer, and anti-diabetic activity. The antibacterial activity of CuO NPs was studied by incorporating the nanoparticles with fluorescent antibiotic Ciprofloxacin HCL (CIP) to form CIP@CuO NPs and tracked inside HEK-293 cell lines. The MIC values of CIP@CuO NPs against 1 × 106 CFU ml−1 Pseudomonas aeruginosa was determined to be 76 µg ml−1and 69 µg ml−1 against 1 × 106 CFU ml−1 Staphylococcus aureus. The CuO NPs were conjugated with the anticancer drug Doxorubicin (DOX) to form DOX@CuONPs, improving delivery toward cancer (HeLa) cells. The intracellular uptake of the drug-loaded CuO NPs was confirmed from confocal micrographs. Finally, the in vitro anti-diabetic activity of lipopeptide-coated CuO NPs was confirmed by the inhibitory activity of α-amylase. In contrast, the in vivo anti-diabetic efficacy of CuO NPs was validated by a significant reduction in blood glucose and glutathione levels. The CuO NPs positively affected the histopathological changes of the pancreas in induced diabetic mice. Cytotoxicity testing with Zebrafish demonstrated abnormal organ development with varying viability and hatching rates at 72 and 96 hpf, with an LC50 of 45 µg/l. Aside from the various potential medicinal characteristics, the study provided valuable information on cytotoxic impact, which can be used in future investigations of their eco-toxicological impacts.

利用从瓦利斯莫蒂斯芽孢杆菌(Bacillus vallismortis)中提取的脂肽生物表面活性剂生物合成了直径在 80-150 纳米范围内的纳米级氧化铜(CuO NPs),并通过 XRD 和 FE-SEM 对其进行了表征。CuO NPs 可作为纳米载体系统用于联合治疗,并具有抗菌、抗氧化、抗癌和抗糖尿病活性。研究人员将 CuO NPs 与荧光抗生素 Ciprofloxacin HCL (CIP) 结合形成 CIP@CuO NPs,并在 HEK-293 细胞系中追踪其抗菌活性。经测定,CIP@CuO NPs 对 1 × 106 CFU ml-1 铜绿假单胞菌的 MIC 值为 76 µg ml-1,对 1 × 106 CFU ml-1 金黄色葡萄球菌的 MIC 值为 69 µg ml-1。CuO NPs 与抗癌药物多柔比星(DOX)共轭,形成 DOX@CuONPs,提高了向癌细胞(HeLa)的递送能力。共聚焦显微照片证实了药物负载的 CuO NPs 在细胞内的吸收。最后,脂肽包裹的 CuO NPs 的体外抗糖尿病活性通过对 α 淀粉酶的抑制活性得到了证实。而 CuO NPs 的体内抗糖尿病功效则通过显著降低血糖和谷胱甘肽水平得到了验证。CuO NPs 对诱导糖尿病小鼠胰腺的组织病理学变化有积极影响。用斑马鱼进行的细胞毒性测试表明,72 和 96 hpf 的斑马鱼器官发育异常,存活率和孵化率各不相同,半数致死浓度为 45 µg/l。除了各种潜在的药用特性外,这项研究还提供了有关细胞毒性影响的宝贵信息,可用于今后对其生态毒理学影响的研究。
{"title":"Therapeutic potential of lipopeptide biosurfactant-fabricated copper oxide nanoparticles: Mechanistic insight into their biocompatibility using zebra fish","authors":"Tamanna Bhuyan ,&nbsp;Yugal Kishore Mohanta ,&nbsp;Kaustuvmani Patowary ,&nbsp;Surjendu Maity ,&nbsp;Debasis Nayak ,&nbsp;Kangkan Deka ,&nbsp;K. Meenakshi Sundaram ,&nbsp;Saravanan Muthupandian ,&nbsp;Hemen Sarma","doi":"10.1016/j.crbiot.2024.100227","DOIUrl":"10.1016/j.crbiot.2024.100227","url":null,"abstract":"<div><p>Nanoscale copper oxide (CuO NPs) with diameters in the 80–150 nm range has been biosynthesized using lipopeptide biosurfactant derived from <em>Bacillus vallismortis</em> and characterized by XRD and FE-SEM. The CuO NPs could be introduced as nanocarrier systems for combination therapy and a potential candidate for antibacterial, antioxidant, anticancer, and anti-diabetic activity. The antibacterial activity of CuO NPs was studied by incorporating the nanoparticles with fluorescent antibiotic Ciprofloxacin HCL (CIP) to form CIP@CuO NPs and tracked inside HEK-293 cell lines. The MIC values of CIP@CuO NPs against 1 × 10<sup>6</sup> CFU ml<sup>−1</sup> <em>Pseudomonas aeruginosa</em> was determined to be 76 µg ml<sup>−1</sup>and 69 µg ml<sup>−1</sup> against 1 × 10<sup>6</sup> CFU ml<sup>−1</sup> <em>Staphylococcus aureus</em>. The CuO NPs were conjugated with the anticancer drug Doxorubicin (DOX) to form DOX@CuONPs, improving delivery toward cancer (HeLa) cells. The intracellular uptake of the drug-loaded CuO NPs was confirmed from confocal micrographs. Finally, the <em>in vitro</em> anti-diabetic activity of lipopeptide-coated CuO NPs was confirmed by the inhibitory activity of α-amylase. In contrast, the <em>in vivo</em> anti-diabetic efficacy of CuO NPs was validated by a significant reduction in blood glucose and glutathione levels. The CuO NPs positively affected the histopathological changes of the pancreas in induced diabetic mice. Cytotoxicity testing with Zebrafish demonstrated abnormal organ development with varying viability and hatching rates at 72 and 96 hpf, with an LC<sub>50</sub> of 45 µg/l. Aside from the various potential medicinal characteristics, the study provided valuable information on cytotoxic impact, which can be used in future investigations of their eco-toxicological impacts.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":5.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262824000534/pdfft?md5=8d3f4605547dc3b7059e4f7c85912037&pid=1-s2.0-S2590262824000534-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141052066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Differential effect of nine cinnamic acid derivatives on the biocatalytic activity of Candida antarctica lipase type B 九种肉桂酸衍生物对白色念珠菌 B 型脂肪酶生物催化活性的不同影响
IF 3.6 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100231
Federico Zappaterra , Domenico Meola , Francesco Presini , Simona Aprile , Valentina Venturi , Chiara Nosengo , Chiara De Luca , Martina Catani , Lindomar Alberto Lerin , Pier Paolo Giovannini

Naturally occurring cinnamic acid derivatives are a broad family of aromatic carboxylic acids with bioactive properties. Among the cinnamic acid derivatives, for instance, are ferulic acid and caffeic acid, which have been widely studied for their antioxidant and anti-inflammatory properties. These active ingredients are mostly poorly soluble in water, which greatly limits their bioavailability. To increase the bioavailability of these acids, green esterification protocols can be developed exploiting lipases. In particular, this article reports the process optimization for the enzymatic esterification of nine cinnamic acid derivatives with erythritol, a polyol highly soluble in water. The study explores how the different substituents present on the aromatic ring of the cinnamic acid derivatives affect the catalytic capacity of the Candida antarctica lipase type B. The study, conducted through both molecular docking and experimental evidence, shows how hydroxyl groups on the aromatic ring can strongly limit the conversion of the acids to the corresponding esters. At the same time, the degree of unsaturation of the derivative also influences the favorable poses in the active site of the lipase. The best results (yields over 95 %) were obtained with 10 g/L of lipase, a temperature of 90 °C, molar ratio (acid/alcohol) of 3:1, for 72 h of reaction time.

天然肉桂酸衍生物是具有生物活性的芳香族羧酸的一个大家族。例如,肉桂酸衍生物中有阿魏酸和咖啡酸,它们的抗氧化和消炎特性已被广泛研究。这些活性成分大多难溶于水,这大大限制了它们的生物利用率。为了提高这些酸的生物利用率,可以利用脂肪酶开发绿色酯化方案。本文特别报道了九种肉桂酸衍生物与赤藓糖醇(一种高水溶性多元醇)进行酶法酯化的工艺优化。研究通过分子对接和实验证据探讨了肉桂酸衍生物芳香环上的不同取代基如何影响白色念珠菌脂肪酶 B 型的催化能力。同时,衍生物的不饱和程度也会影响脂肪酶活性位点的有利位置。使用 10 克/升脂肪酶、温度为 90 °C、摩尔比(酸/醇)为 3:1、反应时间为 72 小时,可获得最佳结果(产率超过 95%)。
{"title":"Differential effect of nine cinnamic acid derivatives on the biocatalytic activity of Candida antarctica lipase type B","authors":"Federico Zappaterra ,&nbsp;Domenico Meola ,&nbsp;Francesco Presini ,&nbsp;Simona Aprile ,&nbsp;Valentina Venturi ,&nbsp;Chiara Nosengo ,&nbsp;Chiara De Luca ,&nbsp;Martina Catani ,&nbsp;Lindomar Alberto Lerin ,&nbsp;Pier Paolo Giovannini","doi":"10.1016/j.crbiot.2024.100231","DOIUrl":"https://doi.org/10.1016/j.crbiot.2024.100231","url":null,"abstract":"<div><p>Naturally occurring cinnamic acid derivatives are a broad family of aromatic carboxylic acids with bioactive properties. Among the cinnamic acid derivatives, for instance, are ferulic acid and caffeic acid, which have been widely studied for their antioxidant and anti-inflammatory properties. These active ingredients are mostly poorly soluble in water, which greatly limits their bioavailability. To increase the bioavailability of these acids, green esterification protocols can be developed exploiting lipases. In particular, this article reports the process optimization for the enzymatic esterification of nine cinnamic acid derivatives with erythritol, a polyol highly soluble in water. The study explores how the different substituents present on the aromatic ring of the cinnamic acid derivatives affect the catalytic capacity of the <em>Candida antarctica</em> lipase type B. The study, conducted through both molecular docking and experimental evidence, shows how hydroxyl groups on the aromatic ring can strongly limit the conversion of the acids to the corresponding esters. At the same time, the degree of unsaturation of the derivative also influences the favorable poses in the active site of the lipase. The best results (yields over 95 %) were obtained with 10 g/L of lipase, a temperature of 90 °C, molar ratio (acid/alcohol) of 3:1, for 72 h of reaction time.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262824000571/pdfft?md5=b874724fa4df134f59458159b3b02bf1&pid=1-s2.0-S2590262824000571-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141434057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biodegradation of (Aminomethyl)phosphonic acid (AMPA) by isolated microbial consortia extracted from biological filters at drinking water treatment plants 从饮用水处理厂生物过滤器中提取的分离微生物群对(氨甲基)膦酸(AMPA)的生物降解
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100248

The widespread use of glyphosate has significantly increased its presence in drinking water sources. Aminomethylphosphonic Acid (AMPA), a breakdown product of glyphosate, is challenging to remove from water using conventional treatment methods, posing risks to public health and environmental safety. This work investigates the biodegradation of AMPA by bacteria isolated from three environmental sources, with a focus on determining their potential application in water treatment systems. Two samples were collected from granular activated carbon (GAC) filters of different operational durations at a water treatment facility, and one sample was taken from soil that had historically been treated with glyphosate-based herbicides. Bacterial isolates capable of degrading AMPA were identified from these samples through selective enrichment, and kinetic degradation experiments were then conducted to assess their effectiveness. In environmental samples, after 48 hrs AMPA removal was > 70 % using GAC from an active treatment plant and soil samples removed 19 %. After bacterial isolation a consortium was isolated and from these four isolates were identified, comprising three species, including novel AMPA degraders M−S3 and M−SS (Myroides sp. mNGS23), and P-S92 (Pseudochrobactrum saccharolyticum). Within both minimal media supplemented with AMPA and raw untreated showing substrate concentrations above 10 mg/L whilst the specific degradation rates saw a decrease in substrate concentrations above 100 mg/L. AMPA removal occured in pilot scale sand filters augmented with P-S92 but removal was inconsistent. These findings show the potential of using biodegradation as an effective treatment strategy for AMPA removal from water. The identification of AMPA-degrading bacteria offers a promising solution for enhancing the removal of this persistent pollutant from contaminated waters. Further research is recommended to explore the full-scale application of these isolates in water treatment processes. This study contributes to the development of sustainable water treatment technologies by harnessing the natural degradative capacities of environmental bacteria.

草甘膦的广泛使用大大增加了其在饮用水源中的存在。草甘膦的分解产物氨甲基膦酸(AMPA)很难用传统的处理方法从水中去除,对公众健康和环境安全构成风险。这项研究调查了从三种环境来源中分离出来的细菌对 AMPA 的生物降解情况,重点是确定它们在水处理系统中的潜在应用。其中两个样本取自水处理设施中不同运行时间的颗粒活性炭(GAC)过滤器,一个样本取自曾用草甘膦除草剂处理过的土壤。通过选择性富集,从这些样本中鉴定出了能够降解 AMPA 的细菌分离物,然后进行了动力学降解实验,以评估其有效性。在环境样本中,使用来自活性处理厂的 GAC,48 小时后 AMPA 的去除率为 70%,土壤样本的去除率为 19%。细菌分离后,分离出了一个菌群,并从中鉴定出了四个分离物,包括三个物种,其中有新型 AMPA 降解菌 M-S3 和 M-SS(Myroides sp. mNGS23)以及 P-S92(Pseudochrobactrum saccharolyticum)。在添加了 AMPA 的最小培养基和未经处理的培养基中,底物浓度都超过了 10 毫克/升,而当底物浓度超过 100 毫克/升时,特定的降解率会下降。在添加了 P-S92 的中试规模砂滤器中,AMPA 被去除,但去除率不一致。这些研究结果表明,生物降解是去除水中 AMPA 的一种有效处理策略。AMPA 降解细菌的鉴定为加强去除受污染水体中的这种持久性污染物提供了一种前景广阔的解决方案。建议开展进一步研究,探索这些分离菌在水处理过程中的全面应用。这项研究通过利用环境细菌的天然降解能力,为开发可持续的水处理技术做出了贡献。
{"title":"Biodegradation of (Aminomethyl)phosphonic acid (AMPA) by isolated microbial consortia extracted from biological filters at drinking water treatment plants","authors":"","doi":"10.1016/j.crbiot.2024.100248","DOIUrl":"10.1016/j.crbiot.2024.100248","url":null,"abstract":"<div><p>The widespread use of glyphosate has significantly increased its presence in drinking water sources. Aminomethylphosphonic Acid (AMPA), a breakdown product of glyphosate, is challenging to remove from water using conventional treatment methods, posing risks to public health and environmental safety. This work investigates the biodegradation of AMPA by bacteria isolated from three environmental sources, with a focus on determining their potential application in water treatment systems. Two samples were collected from granular activated carbon (GAC) filters of different operational durations at a water treatment facility, and one sample was taken from soil that had historically been treated with glyphosate-based herbicides. Bacterial isolates capable of degrading AMPA were identified from these samples through selective enrichment, and kinetic degradation experiments were then conducted to assess their effectiveness. In environmental samples, after 48 hrs AMPA removal was &gt; 70 % using GAC from an active treatment plant and soil samples removed 19 %. After bacterial isolation a consortium was isolated and from these four isolates were identified, comprising three species, including novel AMPA degraders M−S3 and M−SS (<em>Myroides sp</em>. mNGS23), and P-S92 (<em>Pseudochrobactrum saccharolyticum</em>). Within both minimal media supplemented with AMPA and raw untreated showing substrate concentrations above 10 mg/L whilst the specific degradation rates saw a decrease in substrate concentrations above 100 mg/L. AMPA removal occured in pilot scale sand filters augmented with P-S92 but removal was inconsistent. These findings show the potential of using biodegradation as an effective treatment strategy for AMPA removal from water. The identification of AMPA-degrading bacteria offers a promising solution for enhancing the removal of this persistent pollutant from contaminated waters. Further research is recommended to explore the full-scale application of these isolates in water treatment processes. This study contributes to the development of sustainable water treatment technologies by harnessing the natural degradative capacities of environmental bacteria.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262824000741/pdfft?md5=e374ae94461dd0bd9ef172b781e1577e&pid=1-s2.0-S2590262824000741-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142152050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
pH-dependent hydrogels obtained by low molecular weight derivatives of aspartic acid and glutamic acid (L-Asp and L-Glu) 天冬氨酸和谷氨酸的低分子量衍生物(L-Asp 和 L-Glu)获得的 pH 依赖性水凝胶
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100257
We report here the synthesis of two new anionic gemini surfactants, derivatives of L-Asp and L-Glu with analogous structure and their applications as low molecular weight gelators. Conditions for formation of pH-dependent hydrogels and their stability are presented and discussed. Although both compounds possess very close molecular structures, only one of them – the derivative of L-Asp, can form stable hydrogels. Loading of such a hydrogel with silver nanoparticles and the conditions of their release are also studied and described. Different methods to analyze molecular and supramolecular structures, such as NMR, FTIR, UV–VIS and SEM, are used to characterize the compounds and also to understand and follow the processes of loading and release of silver nanoparticles. It was found that a stable hydrogel can be formed only in acidic solution, while release can happen only at basic condition – over pH ≥ 9. The results obtained show that such pH-dependent hydrogels can be used for slowly and gradually supply of active compounds at necessity, expressed through changing the pH of the living tissue.
我们在此报告了两种新型阴离子双子表面活性剂(具有类似结构的 L-Asp 和 L-Glu 衍生物)的合成及其作为低分子量凝胶剂的应用。本文介绍并讨论了根据 pH 值形成水凝胶的条件及其稳定性。虽然这两种化合物的分子结构非常接近,但只有其中一种--L-Asp 的衍生物--可以形成稳定的水凝胶。此外,还研究并描述了在这种水凝胶中添加银纳米粒子及其释放条件。使用了核磁共振、傅立叶变换红外光谱、紫外可见分光光度计和扫描电镜等不同的分子和超分子结构分析方法来描述化合物的特征,并了解和跟踪银纳米粒子的负载和释放过程。研究发现,只有在酸性溶液中才能形成稳定的水凝胶,而只有在碱性条件下(pH 值≥ 9)才能发生释放。研究结果表明,这种依赖于 pH 值的水凝胶可用于在必要时通过改变活体组织的 pH 值缓慢、逐步地提供活性化合物。
{"title":"pH-dependent hydrogels obtained by low molecular weight derivatives of aspartic acid and glutamic acid (L-Asp and L-Glu)","authors":"","doi":"10.1016/j.crbiot.2024.100257","DOIUrl":"10.1016/j.crbiot.2024.100257","url":null,"abstract":"<div><div>We report here the synthesis of two new anionic gemini surfactants, derivatives of L-Asp and L-Glu with analogous structure and their applications as low molecular weight gelators. Conditions for formation of pH-dependent hydrogels and their stability are presented and discussed. Although both compounds possess very close molecular structures, only one of them – the derivative of L-Asp, can form stable hydrogels. Loading of such a hydrogel with silver nanoparticles and the conditions of their release are also studied and described. Different methods to analyze molecular and supramolecular structures, such as NMR, FTIR, UV–VIS and SEM, are used to characterize the compounds and also to understand and follow the processes of loading and release of silver nanoparticles. It was found that a stable hydrogel can be formed only in acidic solution, while release can happen only at basic condition – over pH ≥ 9. The results obtained show that such pH-dependent hydrogels can be used for slowly and gradually supply of active compounds at necessity, expressed through changing the pH of the living tissue.</div></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142421326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Functional study of residual iCre activity relevant for split-Cre applications 与分裂-Cre应用相关的残余iCre活性功能研究
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100263
Cre-lox system is a major tool in mouse molecular genetics instrumental in promoting somatic recombination to spatiotemporally control transcriptional activation/inhibition in subsets of cells or tissues in vivo. A critical factor behind this system may be represented by the availability of a specific promoter driving Cre expression in the cell subset of interest. Split-Cre recombinase system represents an evolution that circumvents this limitation using split N- and C-terminal domains of Cre recombinase placed under the control of two distinct promoters defining an intersectional domain where functional complementation of Cre protein fragments is obtained. This system is a valuable tool for controlling Cre recombinase activity in a spatially and temporally defined manner based on the assumption that neither N- or C-terminal Cre fragments alone have recombinase activity. However, residual recombinase activity of one of the two fragments can occur leading to confounding experimental results. In this work, we delve into characterizing functional activity of different N-terminal deleted codon-optimized Cre (iCre) isoforms to refine Split-Cre-based technologies, aiming to avoid uncontrolled recombinase events. Given the presence of several methionine residues in the amino acidic iCre sequence, we explored whether these residues could serve as potential translation start sites, resulting in truncated isoforms that might retain recombinase activity. To address this question, we tested in HEK293T cells whether site-specific recombination was retained in progressively amino-terminal deleted iCre isoforms. Our results reveal residual enzymatic activity of most amino-terminal deleted isoforms of iCre whose ATG start codon is located downstream of the commonly used split site. This insight holds significance for future refinements of the widely used Split-Cre system, providing information to avoid false positive results stemming from unwanted activity.
Cre-lox 系统是小鼠分子遗传学中的一种重要工具,它有助于促进体细胞重组,从而对体内细胞或组织亚群的转录激活/抑制进行时空控制。该系统背后的一个关键因素可能是在相关细胞亚群中是否存在驱动 Cre 表达的特定启动子。分裂-Cre 重组酶系统代表了一种规避这一限制的进化,它使用分裂的 Cre 重组酶 N 端和 C 端结构域,置于两个不同启动子的控制下,定义了一个交叉结构域,在该结构域中可获得 Cre 蛋白片段的功能互补。该系统是一种宝贵的工具,可用于以空间和时间上明确的方式控制 Cre 重组酶的活性,其假设条件是 N 端或 C 端 Cre 片段单独都不具有重组酶活性。然而,两个片段之一的残余重组酶活性可能会导致实验结果混乱。在这项工作中,我们深入研究了不同的 N 端删除密码子优化 Cre(iCre)异构体的功能活性特征,以完善基于 Split-Cre 的技术,从而避免失控的重组酶事件。鉴于 iCre 氨基酸序列中存在几个蛋氨酸残基,我们探讨了这些残基是否可以作为潜在的翻译起始位点,从而产生可能保留重组酶活性的截短异构体。为了解决这个问题,我们在 HEK293T 细胞中测试了位点特异性重组是否保留在氨基酸末端逐渐缺失的 iCre 异构体中。我们的结果表明,大多数氨基末端缺失的 iCre 异构体(其 ATG 起始密码子位于常用分裂位点的下游)都具有残余的酶活性。这一发现对今后改进广泛使用的 Split-Cre 系统具有重要意义,可为避免因不需要的活性而产生假阳性结果提供信息。
{"title":"Functional study of residual iCre activity relevant for split-Cre applications","authors":"","doi":"10.1016/j.crbiot.2024.100263","DOIUrl":"10.1016/j.crbiot.2024.100263","url":null,"abstract":"<div><div>Cre-lox system is a major tool in mouse molecular genetics instrumental in promoting somatic recombination to spatiotemporally control transcriptional activation/inhibition in subsets of cells or tissues <em>in vivo</em>. A critical factor behind this system may be represented by the availability of a specific promoter driving Cre expression in the cell subset of interest. Split-Cre recombinase system represents an evolution that circumvents this limitation using split N- and C-terminal domains of Cre recombinase placed under the control of two distinct promoters defining an intersectional domain where functional complementation of Cre protein fragments is obtained. This system is a valuable tool for controlling Cre recombinase activity in a spatially and temporally defined manner based on the assumption that neither N- or C-terminal Cre fragments alone have recombinase activity. However, residual recombinase activity of one of the two fragments can occur leading to confounding experimental results. In this work, we delve into characterizing functional activity of different N-terminal deleted codon-optimized Cre (iCre) isoforms to refine Split-Cre-based technologies, aiming to avoid uncontrolled recombinase events. Given the presence of several methionine residues in the amino acidic iCre sequence, we explored whether these residues could serve as potential translation start sites, resulting in truncated isoforms that might retain recombinase activity. To address this question, we tested in HEK293T cells whether site-specific recombination was retained in progressively amino-terminal deleted iCre isoforms. Our results reveal residual enzymatic activity of most amino-terminal deleted isoforms of iCre whose ATG start codon is located downstream of the commonly used split site. This insight holds significance for future refinements of the widely used Split-Cre system, providing information to avoid false positive results stemming from unwanted activity.</div></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142526261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dolastatins and their analogues present a compelling landscape of potential natural and synthetic anticancer drug candidates 多拉斯汀类及其类似物为潜在的天然和合成抗癌候选药物提供了引人注目的前景
IF 5.6 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2023.100167
Sudeshna Nandi , Somanjana Khatua , Anish Nag , Surjit Sen , Nilanjan Chakraborty , Arghya Naskar , Krishnendu Acharya , Reham Hassan Mekky , María del Mar Contreras , Daniela Calina , Irene Dini , Javad Sharifi-Rad

Human cancer remains a leading cause of global mortality. Traditional treatment methods, while effective are often associated with substantial side effects, high technical requirements, and considerable expenses. Recently, anticancer peptides, such as dolastatin-type peptides naturally found in marine mollusc Dolabella auricularia, have gained attention due to their enhanced characteristics and specific targeting of cancer cells with minimal toxicity to normal cells. This review aims to provide a comprehensive summary of the anticancer activities of natural dolastatins and synthetic analogues over the past 35 years, focusing on their utilization in advancing cancer treatment strategies. This updated review encompasses a detailed analysis of numerous studies demonstrating the cytotoxic effects of dolastatins and their synthetic analogues on various human tumour cell lines. The analysis includes investigations into their ability to activate apoptosis pathways, inhibit cell cycle progression, and indirectly limit inflammation and angiogenesis in tumours. Both natural dolastatins and synthetic analogues have demonstrated significant anticancer properties through a variety of mechanisms in vitro and in vivo pharmacological studies. Some have even advanced to clinical trials, either alone or in combination with other agents, and have shown promising outcomes. The biological activities of dolastatins and their synthetic analogues offer a promising path in the development of more effective and sustainable anticancer drugs. Their specific action on cancer cells and relative non-toxicity to normal cells highlight their potential as superior cancer therapeutic agents. The current study provides a platform for the most recent preclinical and clinical research on dolastatins and their analogues. Further research into these marine peptides may contribute to the development of sustainable and efficient treatment models for cancer, filling a significant gap in the current cancer therapeutic portfolio.

人类癌症仍然是全球死亡的主要原因。传统的治疗方法虽然有效,但往往伴随着巨大的副作用、较高的技术要求和可观的费用。最近,抗癌肽,如海洋软体动物 Dolabella auricularia 中天然发现的多拉他汀类肽,因其增强的特性和对癌细胞的特异性靶向性,以及对正常细胞的最小毒性而备受关注。本综述旨在全面总结过去 35 年来天然多拉菌素和合成类似物的抗癌活性,重点关注它们在推进癌症治疗策略方面的应用。这篇最新综述详细分析了大量研究,这些研究证明了多拉斯汀类化合物及其合成类似物对各种人类肿瘤细胞系的细胞毒性作用。分析包括研究它们激活细胞凋亡途径、抑制细胞周期进展以及间接限制肿瘤炎症和血管生成的能力。天然多拉斯汀类和合成类似物在体外和体内药理学研究中通过各种机制表现出了显著的抗癌特性。有些药物甚至已经进入临床试验阶段,无论是单独使用还是与其他药物联合使用,都显示出良好的效果。多拉斯汀类化合物及其合成类似物的生物活性为开发更有效、更可持续的抗癌药物提供了广阔的前景。它们对癌细胞的特异性作用以及对正常细胞的相对无毒性,凸显了它们作为优质癌症治疗药物的潜力。目前的研究为有关多拉斯汀及其类似物的最新临床前和临床研究提供了一个平台。对这些海洋肽的进一步研究可能有助于开发可持续和高效的癌症治疗模式,填补目前癌症治疗组合中的重大空白。
{"title":"Dolastatins and their analogues present a compelling landscape of potential natural and synthetic anticancer drug candidates","authors":"Sudeshna Nandi ,&nbsp;Somanjana Khatua ,&nbsp;Anish Nag ,&nbsp;Surjit Sen ,&nbsp;Nilanjan Chakraborty ,&nbsp;Arghya Naskar ,&nbsp;Krishnendu Acharya ,&nbsp;Reham Hassan Mekky ,&nbsp;María del Mar Contreras ,&nbsp;Daniela Calina ,&nbsp;Irene Dini ,&nbsp;Javad Sharifi-Rad","doi":"10.1016/j.crbiot.2023.100167","DOIUrl":"10.1016/j.crbiot.2023.100167","url":null,"abstract":"<div><p>Human cancer remains a leading cause of global mortality. Traditional treatment methods, while effective are often associated with substantial side effects, high technical requirements, and considerable expenses. Recently, anticancer peptides, such as dolastatin-type peptides naturally found in marine mollusc <em>Dolabella auricularia</em>, have gained attention due to their enhanced characteristics and specific targeting of cancer cells with minimal toxicity to normal cells. This review aims to provide a comprehensive summary of the anticancer activities of natural dolastatins and synthetic analogues over the past 35 years, focusing on their utilization in advancing cancer treatment strategies. This updated review encompasses a detailed analysis of numerous studies demonstrating the cytotoxic effects of dolastatins and their synthetic analogues on various human tumour cell lines. The analysis includes investigations into their ability to activate apoptosis pathways, inhibit cell cycle progression, and indirectly limit inflammation and angiogenesis in tumours. Both natural dolastatins and synthetic analogues have demonstrated significant anticancer properties through a variety of mechanisms <em>in vitro</em> and <em>in vivo</em> pharmacological studies. Some have even advanced to clinical trials, either alone or in combination with other agents, and have shown promising outcomes. The biological activities of dolastatins and their synthetic analogues offer a promising path in the development of more effective and sustainable anticancer drugs. Their specific action on cancer cells and relative non-toxicity to normal cells highlight their potential as superior cancer therapeutic agents. The current study provides a platform for the most recent preclinical and clinical research on dolastatins and their analogues. Further research into these marine peptides may contribute to the development of sustainable and efficient treatment models for cancer, filling a significant gap in the current cancer therapeutic portfolio.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":5.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262823000497/pdfft?md5=671032c9a2d5c7652226befe9bc9afdf&pid=1-s2.0-S2590262823000497-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139019691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Drug Discovery, Diagnostic, and therapeutic trends on Mpox: A patent landscape 有关 Mpox 的药物发现、诊断和治疗趋势:专利概况
IF 5.6 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2023.100173
Rohit Sharma , Ruchi Sharma , Rajeev K. Singla

As of early 2022, Mpox has resurged and expanded globally, posing a new threat to global health. In close to 110 countries, 87,000 confirmed cases and 112 deaths have been reported as on April 18, 2023. Considering the current pandemic crisis and future developments, it is imperative to understand and characterize the global patent scenario of Mpox. In biological sciences, patents are often promising indicators of technological knowledge production. This patent landscape analysis is the first to provide a solid intellectual foundation for the ongoing development of diagnostic measures, therapeutic drug agents, and vaccines for Mpox. Our search encompassed several patent databases to identify patents related to Mpox, including PatSeer, Google patents, lens.org, Espacenet, and Patentscope. Patenting trends are discussed, and a Whitespace analysis is carried out in this paper, suggesting the knowledge gaps and promising areas for future research on Mpox. This study could serve as an epicentre for provoking ideas and mitigation strategies.

截至 2022 年初,麻风腮病毒在全球范围内再次出现并蔓延,对全球健康构成了新的威胁。截至 2023 年 4 月 18 日,近 110 个国家报告了 87,000 例确诊病例和 112 例死亡病例。考虑到当前的流行病危机和未来的发展,当务之急是了解和描述全球麻痘专利的情况。在生物科学领域,专利往往是技术知识生产的有利指标。本专利图谱分析首次为正在进行的麻腮风诊断措施、治疗药物制剂和疫苗的开发提供了坚实的知识基础。我们的检索涵盖了多个专利数据库,以确定与麻疹相关的专利,包括 PatSeer、谷歌专利、lens.org、Espacenet 和 Patentscope。本文讨论了专利申请趋势,并进行了空白分析,提出了有关 Mpox 的知识缺口和未来研究的前景领域。本研究可作为启发思路和缓解策略的中心。
{"title":"Drug Discovery, Diagnostic, and therapeutic trends on Mpox: A patent landscape","authors":"Rohit Sharma ,&nbsp;Ruchi Sharma ,&nbsp;Rajeev K. Singla","doi":"10.1016/j.crbiot.2023.100173","DOIUrl":"10.1016/j.crbiot.2023.100173","url":null,"abstract":"<div><p>As of early 2022, Mpox has resurged and expanded globally, posing a new threat to global health. In close to 110 countries, 87,000 confirmed cases and 112 deaths have been reported as on April 18, 2023. Considering the current pandemic crisis and future developments, it is imperative to understand and characterize the global patent scenario of Mpox. In biological sciences, patents are often promising indicators of technological knowledge production. This patent landscape analysis is the first to provide a solid intellectual foundation for the ongoing development of diagnostic measures, therapeutic drug agents, and vaccines for Mpox. Our search encompassed several patent databases to identify patents related to Mpox, including PatSeer, Google patents, <span>lens.org</span><svg><path></path></svg>, Espacenet, and Patentscope. Patenting trends are discussed, and a Whitespace analysis is carried out in this paper, suggesting the knowledge gaps and promising areas for future research on Mpox. This study could serve as an epicentre for provoking ideas and mitigation strategies.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":5.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262823000552/pdfft?md5=77dcdf1dcbd7b09e2657ea1325206c5f&pid=1-s2.0-S2590262823000552-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139021029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deciphering the gut microbiome: The revolution of artificial intelligence in microbiota analysis and intervention 解密肠道微生物群:人工智能在微生物群分析和干预方面的革命
IF 5.6 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100211
Mohammad Abavisani , Alireza Khoshrou , Sobhan Karbas Foroushan , Negar Ebadpour , Amirhossein Sahebkar

The human gut microbiome is an intricate ecosystem with profound implications for host metabolism, immune function, and neuroendocrine activity. Over the years, studies have strived to decode this microbial universe, especially its interactions with human health and underlying metabolic processes. Traditional analyses often struggle with the complex interplay within the microbiome due to presumptions of microbial independence. In response, machine learning (ML) and deep learning (DL) provide advanced multivariate and non-linear analytical tools that adeptly capture the complex interactions within the microbiota. With the influx of data from metagenomic next-generation sequencing (mNGS), there's an increasing reliance on these artificial intelligence (AI) subsets to derive actionable insights. This review delves deep into the cutting-edge ML techniques tailored for human gut microbiota research. It further underscores the potential of gut microbiota in shaping clinical diagnostics, prognosis, and intervention strategies, pointing to a future where computational methods bridge the gap between microbiome knowledge and targeted health interventions.

人类肠道微生物群是一个错综复杂的生态系统,对宿主的新陈代谢、免疫功能和神经内分泌活动有着深远的影响。多年来,研究人员一直在努力破解这一微生物宇宙,特别是它与人类健康和潜在代谢过程的相互作用。由于假定微生物具有独立性,传统的分析往往难以解决微生物组内部复杂的相互作用。为此,机器学习(ML)和深度学习(DL)提供了先进的多变量和非线性分析工具,能够很好地捕捉微生物群内部复杂的相互作用。随着元基因组下一代测序(mNGS)数据的大量涌入,人们越来越依赖这些人工智能(AI)子集来获得可操作的见解。本综述深入探讨了为人类肠道微生物群研究量身定制的前沿人工智能技术。它进一步强调了肠道微生物群在塑造临床诊断、预后和干预策略方面的潜力,并指出在未来,计算方法将在微生物群知识和有针对性的健康干预之间架起一座桥梁。
{"title":"Deciphering the gut microbiome: The revolution of artificial intelligence in microbiota analysis and intervention","authors":"Mohammad Abavisani ,&nbsp;Alireza Khoshrou ,&nbsp;Sobhan Karbas Foroushan ,&nbsp;Negar Ebadpour ,&nbsp;Amirhossein Sahebkar","doi":"10.1016/j.crbiot.2024.100211","DOIUrl":"10.1016/j.crbiot.2024.100211","url":null,"abstract":"<div><p>The human gut microbiome is an intricate ecosystem with profound implications for host metabolism, immune function, and neuroendocrine activity. Over the years, studies have strived to decode this microbial universe, especially its interactions with human health and underlying metabolic processes. Traditional analyses often struggle with the complex interplay within the microbiome due to presumptions of microbial independence. In response, machine learning (ML) and deep learning (DL) provide advanced multivariate and non-linear analytical tools that adeptly capture the complex interactions within the microbiota. With the influx of data from metagenomic next-generation sequencing (mNGS), there's an increasing reliance on these artificial intelligence (AI) subsets to derive actionable insights. This review delves deep into the cutting-edge ML techniques tailored for human gut microbiota research. It further underscores the potential of gut microbiota in shaping clinical diagnostics, prognosis, and intervention strategies, pointing to a future where computational methods bridge the gap between microbiome knowledge and targeted health interventions.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":5.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262824000376/pdfft?md5=245f0081d11c539786fd3fec74e20573&pid=1-s2.0-S2590262824000376-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140795710","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative evaluation of myogenic potential of purebred chicken muscle stem cells 纯种鸡肌肉干细胞致肌潜能的比较评估
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.crbiot.2024.100241

We evaluated the myogenic potential of muscle stem cells (MuSCs) derived from three distinct chicken purebreds—Rhode Island Red (RIR), White Leghorn (WL), and Cornish (CN). Chicken MuSCs were isolated from the breast muscles of chicken embryos on embryonic day 18 using a pre-plating method. Subsequently, the cells underwent a three-day proliferation period, followed by a three-day differentiation phase. WL MuSCs exhibited higher myogenic potential initially compared to RIR and CN. Despite a relatively lower proliferation rate, WL demonstrated a higher proportion of PAX7-positive cells and showed higher expression of myogenic regulatory factor genes than the other breeds. During differentiation, MuSCs from WL formed thicker muscle fibers and showed the highest proportion of myosin-heavy chain-positive cells than MuSCs from other breeds. Additionally, the expression of MYH1, associated with muscle maturation, was highest in WL. Overall, this finding suggests that the myogenic potential of MuSCs from WL surpasses those of RIR and CN. Given the fact that WL is primarily used for egg laying with a low growth rate in the traditional poultry industry, the present study highlights the crucial distinction between selecting production characteristics in conventional animal husbandry and those desirable for cultured meat production.

我们评估了来自三种不同纯种鸡--罗德岛红鸡(RIR)、白莱格鸡(WL)和康尼什鸡(CN)的肌肉干细胞(MuSCs)的成肌潜能。鸡MuSCs是在胚胎第18天用预置法从鸡胚的胸肌中分离出来的。随后,细胞经历了三天的增殖期和三天的分化期。与RIR和CN相比,WL MuSCs最初表现出更高的成肌潜能。尽管WL的增殖率相对较低,但它的PAX7阳性细胞比例较高,成肌调节因子基因的表达也高于其他品种。在分化过程中,与其他品种的肌肉干细胞相比,WL 的肌肉干细胞形成的肌纤维更粗,肌球蛋白重链阳性细胞的比例也最高。此外,与肌肉成熟有关的 MYH1 在 WL 中的表达量最高。总之,这一发现表明,WL 的肌肉干细胞的成肌潜力超过了 RIR 和 CN 的肌肉干细胞。鉴于 WL 在传统家禽业中主要用于产蛋,生长速度较低,本研究强调了传统畜牧业中选择生产特性与养殖肉类生产中选择生产特性之间的关键区别。
{"title":"Comparative evaluation of myogenic potential of purebred chicken muscle stem cells","authors":"","doi":"10.1016/j.crbiot.2024.100241","DOIUrl":"10.1016/j.crbiot.2024.100241","url":null,"abstract":"<div><p>We evaluated the myogenic potential of muscle stem cells (MuSCs) derived from three distinct chicken purebreds—Rhode Island Red (RIR), White Leghorn (WL), and Cornish (CN). Chicken MuSCs were isolated from the breast muscles of chicken embryos on embryonic day 18 using a pre-plating method. Subsequently, the cells underwent a three-day proliferation period, followed by a three-day differentiation phase. WL MuSCs exhibited higher myogenic potential initially compared to RIR and CN. Despite a relatively lower proliferation rate, WL demonstrated a higher proportion of PAX7-positive cells and showed higher expression of myogenic regulatory factor genes than the other breeds. During differentiation, MuSCs from WL formed thicker muscle fibers and showed the highest proportion of myosin-heavy chain-positive cells than MuSCs from other breeds. Additionally, the expression of <em>MYH1</em>, associated with muscle maturation, was highest in WL. Overall, this finding suggests that the myogenic potential of MuSCs from WL surpasses those of RIR and CN. Given the fact that WL is primarily used for egg laying with a low growth rate in the traditional poultry industry, the present study highlights the crucial distinction between selecting production characteristics in conventional animal husbandry and those desirable for cultured meat production.</p></div>","PeriodicalId":52676,"journal":{"name":"Current Research in Biotechnology","volume":null,"pages":null},"PeriodicalIF":3.6,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2590262824000674/pdfft?md5=6a87d9b92152f144f5a06ea51c0b0bf6&pid=1-s2.0-S2590262824000674-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141838358","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Current Research in Biotechnology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1