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MD Simulation of AEDG Peptide Complexes with New K2R Dendrimer and Dendrigraft 新型K2R树突和树突的AEDG肽复合物的MD模拟
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.9
E. Fatullaev, V. Bezrodnyi, I. Neelov
Biocompatible peptide dendrimers and dendrigrafts have useful properties for application in biomedicine. In previous papers the computational approach for study lysine dendrimers and dendrigrafts as well as their complexes with various medical peptides was used. In this paper the comparison of complex formation between molecules of therapeutic AEDG tetrapeptide and novel K2R peptide dendrimer or DG2 dendrigraft of near the same size and charge was fulfilled. The systems consisting of 16 therapeutic AEDG tetrapeptide molecules and one dendrimer or one dendrigraft were studied by molecular dynamics simulation. Full atomic models of these molecules in water with explicit counterions were used for this goal. First of all, the process of complex formation was studied. It was obtained that peptide molecules were attracted by both branched molecules and were quickly adsorbed by them. Times of complexes formation as well as size, anisotropy and structure of each complex were calculated. It was demonstrated that both K2R dendrimer and DG2 dendrigraft are effective for complexation of these peptide molecules but new dendrimer complex is more stable than dendrigraft complex because it has almost twice more hydrogen bonds with peptide molecules and 33% more ion pairs with their charged groups.
具有生物相容性的肽树枝状大分子和树状移植物具有在生物医学中应用的有用性质。在以前的论文中,使用了计算方法来研究赖氨酸树枝状大分子和树枝状三酯以及它们与各种医疗肽的复合物。在本文中,对治疗性AEDG四肽分子与大小和电荷接近的新型K2R肽树状大分子或DG2树状大分子之间的复合物形成进行了比较。通过分子动力学模拟研究了由16个治疗性AEDG四肽分子和一个树状大分子或一个树状三酯组成的系统。这些分子在水中的全原子模型和明确的反离子被用于这一目标。首先,对复合物的形成过程进行了研究。结果表明,肽分子被两个支链分子吸引并迅速被它们吸附。计算了配合物的形成时间以及每个配合物的大小、各向异性和结构。研究表明,K2R树状大分子和DG2树状大分子对这些肽分子的络合都是有效的,但新的树状大分子复合物比树状大分子更稳定,因为它与肽分子的氢键几乎增加了两倍,与带电荷基团的离子对增加了33%。
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引用次数: 0
Study of Hematological Characteristics and Mineral Metabolism of Moscow Black Chickens in the Process of Acclimatization in the Astrakhan Region 阿斯特拉罕地区莫斯科黑鸡适应过程中血液学特性和矿物质代谢的研究
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.2
Bratashova Tatyana Sergeevna, Zakharkina Natalya Ivanovna, Shcherbakova Elena Nikolaevna, Safonov Vladimir Aleksandrovich
The study of indicators characterizing the processes associated with the acclimatization of birds in new biogeochemical conditions is of interest in connection with the prospects of the poultry industry in the Astrakhan Region, where the lack of important trace elements in soils and plant feeds: Se, I, Co, is observed. In the presented study, the main hematological and biochemical parameters of blood and mineral metabolism were determined in 2 groups of chickens of the Moscow black breed: imported to the Astrakhan Region from Moscow and kept in the Moscow Region. The analyses revealed strong differences (P<0.01) in indicators of two groups. The acclimatized birds were characterized by low levels of red blood cells and hemoglobin in the blood, as well as a higher content of white blood cells than in the second group. The chickens had impaired lipid and protein metabolism. A 71.3% increase in the level of total sugar most likely indicated a stress state of birds. Compared with the chickens in the Moscow Region, the level of calcium in their blood was 32.4% lower, phosphorus – 12.9%. To a large extent, a decrease in the levels of iodine and selenium – by 5.3 and 5.2 times, respectively, was observed. Thus, in the absence of external changes, acclimatized chickens are subject to a latent form of combined I- and Se-hypomicroelementosis. At the same time, a drop in egg productivity by 19% is the recorded fact. The necessity to adapt to the new climatic conditions of the Lower Volga region for birds, combined with a lack of important trace elements, can cause increased oxidative stress in acclimatized birds. Based on the results of the study, the use of feed additives that make up for the deficiency of necessary trace elements is recommended.
研究表征鸟类在新的生物地球化学条件下适应过程的指标与阿斯特拉罕地区家禽业的前景有关,该地区的土壤和植物饲料中缺乏重要的微量元素:硒、碘、钴。本研究测定了从莫斯科进口到阿斯特拉罕地区和在莫斯科州饲养的2组莫斯科黑种鸡的主要血液生化指标和矿物质代谢指标。两组患者各项指标差异有显著性意义(P<0.01)。与第二组相比,被驯化的鸟类血液中的红细胞和血红蛋白水平较低,白细胞含量较高。鸡脂质和蛋白质代谢受损。总糖水平增加71.3%很可能表明鸟类处于应激状态。与莫斯科地区的鸡相比,它们血液中的钙含量低32.4%,磷含量低12.9%。在很大程度上,观察到碘和硒的含量分别下降了5.3倍和5.2倍。因此,在没有外部变化的情况下,驯化的鸡会受到潜在的I-和se -低微量元素血症的影响。与此同时,产蛋率下降19%是有记录的事实。鸟类必须适应伏尔加河下游地区的新气候条件,再加上缺乏重要的微量元素,可能会导致已适应环境的鸟类氧化应激增加。根据研究结果,建议使用饲料添加剂来弥补必需微量元素的不足。
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引用次数: 0
Functional Reaction of the Cardiovascular System to Irritation of Vestibular Receptors in Students Engaged in Different Types of Martial Arts 参加不同类型武术的学生心血管系统对前庭受体刺激的功能反应
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.12
I. Medvedev, V. Karpov, O. Makurina, M. V. Eremin, A. Dorontsev, F. R. Sibgatulina, D. A. Ivanov
Regular dosed physical activity in all cases has a tonic and healing effect on a person. Feasible muscle activity helps to improve the function of the heart, lungs, blood vessels and the nervous system. In martial arts, the reactivity of the vestibular apparatus is of great importance, providing the flow of information about the current position of the body in space, the success of movement in it and maintaining the stability of the posture due to the effective redistribution of muscle tone. Purpose of the work: to find out the dependence of the reaction of the cardiovascular system to the arising vestibular irritation in different types of martial arts. Martial arts classes help to increase the degree of vestibular stability. The statokinetic stability is very pronounced and increases in the course of hand-to-hand combat, which has a lot of moments with different severity of angular accelerations. The peculiarities of motor activity in any kind of martial arts inevitably affect the peculiarities of the reaction to the test with a change in the position of the head.
在所有情况下,定期进行体力活动对人都有补益和治疗作用。可行的肌肉活动有助于改善心脏、肺部、血管和神经系统的功能。在武术中,前庭装置的反应性非常重要,它提供了关于身体在空间中当前位置的信息流,在其中运动的成功,并由于肌肉张力的有效再分配而保持姿势的稳定性。研究目的:了解不同类型武术中心血管系统对前庭刺激反应的依赖性。武术课有助于提高前庭的稳定性。在肉搏战过程中,静态运动学稳定性非常明显,并且会增加,肉搏战有很多不同角度加速度严重程度的时刻。在任何一种武术中,运动活动的特点都不可避免地会随着头部位置的变化而影响对测试的反应的特点。
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引用次数: 2
Peculiarities of Inheriting Coat Colour Shades in the Breed “Golden Retriever” “金毛寻回犬”毛色阴影遗传的特点
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.15
Alexander A. Ermakov
The Article describes the peculiarities of colour shades in the Golden Retriever breed. The separate attention was given to nowadays existence of different standards of coat colour in this breed across the world, and these standards admit a broad variety of different shades in golden colour. Herewith it has been established that the white pigmentation colour of golden retrievers is unallowable in any of “Kennel Club” standards valid for today. The special focus was put to the genotype of breed, which presupposes the existence of double recessive gene (e/e) that predetermines creamy shade of coat colour. It was discovered that exactly the gene MC1R, its autosomal-recessive inheritance, plays the leading role in defining the coat colour of dogs and in the exterior of the breed. It was assumed how and why this genotype is widespread in population, at which extent sub-populations are distinguished (American and English-European ones), and also there was the option offered related to breeding the pure line on the basis of knowledge about karyotype of dogs, that were obtained in a course of predicative screening of E-locus.
本文描述了金毛猎犬品种颜色深浅的特点。目前,世界各地对该品种的毛色有不同的标准,这些标准允许各种不同的金色深浅。在此已经确定,在任何“养犬俱乐部”的标准中,金毛猎犬的白色色素是不允许的。特别关注的是品种的基因型,它预设了双隐性基因(e/e)的存在,这种基因预先决定了乳白色的毛色。人们发现,正是MC1R基因,即常染色体隐性遗传,在决定狗的毛色和该品种的外观方面起着主导作用。假设这种基因型是如何以及为什么在种群中广泛分布的,在何种程度上区分亚种群(美国和英国-欧洲的亚种群),并且在E-locus的预测筛选过程中获得的关于狗核型的知识的基础上提供了与纯种繁育相关的选择。
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引用次数: 0
Physical Activity and Blood Sugar Levels in People with Diabetes Mellitus: Evidence from Indonesia 糖尿病患者的身体活动和血糖水平:来自印度尼西亚的证据
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.19
M. A. Zainaro, Ridwan Ridwan, Rias Tusianah, Sudjarwo Sudjarwo, U. C. Isnainy, Albet Maydiantoro, Tubagus Ali Rachman Puja Kesuma, H. Hariri, Aprina Aprina
Diabetes mellitus (DM) is a slowly deadly disease. Indonesia has the 4th highest number of diabetes mellitus after China, India and the United States. People with diabetes have grown from 8.4 million in 2000 and will become 21.3 million in 2030. This study aims to determine the relationship between body movement and blood sugar levels in patients with type 2 diabetes mellitus. This type of research is quantitative, with a design analytical research and cross-sectional approach. The sample of this study was 131 people with the criteria for suffering from type 2 diabetes mellitus. Data collection used the Global Body Movement Questionnaire (GPAQ) questionnaire, and the statistical test used was the Chi-Square statistical test. The results showed that there was a relationship between physical activity and blood sugar levels in patients with type 2 diabetes mellitus, so it is recommended that DM patients should routinely carry out body movements and control blood sugar levels in health care facilities and take advantage of health services such as health workers if they experience problems in performing body movements and follow a diabetic diet according to the advice of a nutritionist. In-depth conclusions and implications are discussed.
糖尿病是一种缓慢致死的疾病。印度尼西亚的糖尿病发病率位居第四,仅次于中国、印度和美国。糖尿病患者已从2000年的840万增加到2030年的2130万。本研究旨在确定2型糖尿病患者的身体运动与血糖水平之间的关系。这类研究是定量的,采用设计分析研究和横断面方法。这项研究的样本是131名符合2型糖尿病标准的人。数据收集采用全球身体运动问卷(GPAQ),采用卡方统计检验。结果表明,2型糖尿病患者的体力活动与血糖水平之间存在一定的关系,因此,建议糖尿病患者在医疗机构中定期进行身体运动和控制血糖水平,如果他们在进行身体运动时遇到问题,并根据营养学家的建议遵循糖尿病饮食,则应利用卫生工作者等卫生服务。深入讨论了结论和含义。
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引用次数: 0
Light Sleep Detection based on Surface Electromyography Signals for Nap Monitoring 基于表面肌电信号的轻度睡眠监测
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.18
Wachiraporn Aiamklin, Y. Jewajinda, Yunyong Punsawad
This paper proposes the development of automatic sleep stage detection by using physiological signals. We aim to develop an application to assist drivers after drowsiness or fatigue detection by a commercial driver vigilance system. The proposed method used a low-cost surface electromyography (EMG) device for sleep stage detection. We investigate skeletal muscle location and EMG features from sleep stage 2 to provide an EMG-based nap monitoring system. The results showed that using only one channel of a bipolar EMG signal from an upper trapezius muscle with median power frequency can achieve 84% accuracy. We implement a MyoWare muscle sensor into the proposed nap monitoring device. The results showed that the proposed system is feasible for detecting sleep stages and waking up the napper. A combination of EMG and electroencephalogram (EEG) signals might be yield a high system performance for nap monitoring and alarm system. We will prototype a portable device to connect the application to a smartphone and test with a target group, such as truck drivers and physicians.
本文提出了一种基于生理信号的睡眠阶段自动检测方法。我们的目标是开发一个应用程序,以帮助司机昏昏欲睡或疲劳后,由商业司机警惕系统检测。该方法使用低成本的表面肌电图(EMG)设备进行睡眠阶段检测。我们研究了睡眠第二阶段的骨骼肌位置和肌电图特征,以提供一个基于肌电图的午睡监测系统。结果表明,仅使用中位工频上斜方肌双极性肌电图信号的一个通道,准确率可达84%。我们将MyoWare肌肉传感器实现到所提出的午睡监测设备中。实验结果表明,该系统在检测睡眠阶段和唤醒午睡者方面是可行的。肌电和脑电图信号的结合可为午睡监测和报警系统提供较高的系统性能。我们将制作一个便携式设备的原型,将应用程序连接到智能手机上,并在目标群体中进行测试,比如卡车司机和医生。
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引用次数: 2
A Functional Electrical Stimulator to Enable Grasping Through Wrist Flexion 一种通过手腕弯曲实现抓握的功能性电刺激仪
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.4
S. Mahendra, Viswanath Talasila, A. G. Dutt, Mukund Balaji, Abhishek C. Mouli
Functional electrical stimulation is an assistive technique that utilizes electrical discharges to produce functional movements in patients suffering from neurological impairments. In this work, a biphasic, programmable current- controlled functional electrical stimulator system is designed to enable hand grasping facilitated by wrist flexion. The developed system utilizes an operational amplifier based current source and is supported by a user interface to adjust stimulation parameters. The device is integrated with an accelerometer to measure the degree of stimulated movement. The system is validated, firstly, on two passive electrical loads and subsequently on four healthy volunteers. The device is designed to deliver currents between 0-30mA, and the error between the measured current and simulated current for two loads were -0.967±0.676mA and -0.995±0.97mA. The angular data from the accelerometer provided information regarding variations in movement between the subjects. The architecture of the proposed system is such that it can, in principle, automatically adjust the parameters of simulation to induce the desired movement optimally by measuring a stimulated movement artifact (e.g., angular position) in real time.
功能性电刺激是一种辅助技术,利用放电为患有神经损伤的患者产生功能性运动。在这项工作中,设计了一个双相、可编程电流控制的功能性电刺激器系统,以实现通过手腕弯曲促进抓握。所开发的系统利用基于运算放大器的电流源,并由用户界面支持以调整刺激参数。该设备与加速度计集成,用于测量受刺激运动的程度。该系统首先在两个无源电气负载上进行了验证,随后在四名健康志愿者身上进行了测试。该设备设计用于输送0-30mA的电流,两个负载的测量电流和模拟电流之间的误差分别为-0.967±0.676mA和-0.995±0.97mA。加速度计的角度数据提供了受试者之间运动变化的信息。所提出的系统的架构使得其原则上可以通过实时测量受激运动伪像(例如,角位置)来自动调整模拟的参数,以最优地诱导期望的运动。
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引用次数: 0
Data Analysis for microRNA and Related Diagnoses microRNA的数据分析及相关诊断
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.17
Eugenia D. Namiot, Maxim Khakhin
MicroRNAs are non-coding molecules that play a significant role in the development of the disease. MicroRNAs can act as biomarkers or independently lead to the development of a disease. Due to the large numbers of microRNAs, most of the current works focus on the creation of a new way of microRNA clustering or grouping. Today, there are a huge number of different databases that distribute open microRNAs into groups. The problem is that there is no way to evaluate such databases and created clusters. In this work, we propose a new method for assessing the distribution of microRNAs in a cluster, which in the future can be used to predict new sequential ones capable of causing disease. The proposed method can also be used for a better understanding of the mechanisms of various diseases. Since cardiovascular diseases rank first in terms of the number of deaths, they were chosen as the analyzed ones. The Human microRNA Disease Database was used as an analyzed database in this work. The obtained results show that the proposed method can analyze the created databases and can be used in further practice. The proposed model makes it possible to predict new microRNAs for given diagnoses.
microrna是非编码分子,在疾病的发展中起着重要作用。MicroRNAs可以作为生物标志物或独立导致疾病的发展。由于microRNA数量众多,目前的大部分工作都集中在建立microRNA聚类或分组的新方法上。今天,有大量不同的数据库将开放的microrna分成不同的组。问题是没有办法评估这样的数据库和创建的集群。在这项工作中,我们提出了一种新的方法来评估microrna在集群中的分布,这在未来可以用来预测能够引起疾病的新的序列。所提出的方法也可用于更好地了解各种疾病的机制。由于心血管疾病在死亡人数中排名第一,因此选择心血管疾病作为分析对象。本研究使用人类microRNA疾病数据库作为分析数据库。实验结果表明,该方法可以对已创建的数据库进行分析,并可用于进一步的实际应用。提出的模型使预测新的microrna为给定的诊断成为可能。
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引用次数: 0
A Novel Approach towards Automatic Contour Identification of Jaw Cysts from Digital Panoramic Radiographs to improvise the Treatment planning 一种从数字全景照片中自动识别颌骨囊肿轮廓的新方法,以改进治疗计划
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-01-10 DOI: 10.46300/91011.2022.16.1
D. Veena, A. Jatti, M. Vidya, Revan Joshi, Srikar Gade
Panoramic dental x-ray, a two-dimensional dental x-ray that captures the entire mouth in a single image, is used for the initial screening of various dental anomalies. One such is Jaw bone cyst, which, if not identified earlier, may lead to complications which in turn may lead to disfigurement and loss of function. Hence processing of radiographic images plays a vital role in identifying and locating the cystic region and extracting related features to assist clinical experts in further analysis. Objective: To develop an application of active contour model, known as Geodesic Active Contour, to generate Panoramic Dental X-Ray, a single 2 D X-ray image of the entire mouth highlighting the dental specifications. Methods: The process involves the image conversion from the OPG image into grayscale, Contrast adjustment using intensity level slicing, edge smoothing, segmentation, and cyst segmentation by Morphological Geodesic Active Contour to obtain the results. Hence processing of radiographic images plays a vital role in identifying and locating the cystic region. It is crucial in extracting related features to assist clinical experts in further analysis. Conclusion: When efficient and accurate diagnostic methods exist, the treatment and cure become easy and concrete. Based on the morphological snake and level sets, it aims at identifying the boundary by minimizing the energy. Results: Using the structural similarity index, an accuracy of 97.6% is obtained. Advances in Knowledge: This process is advantageous as it is simpler, faster, and does not suffer from instability problems. Morphological methods improve their functional gradient descent by improving stability and speed. The hysteresis algorithm exhibits better edge detection performance, a significant reduction in computational time and scalability.
全景牙科x射线是一种二维牙科x射线,在一张图像中捕捉整个口腔,用于各种牙科异常的初步筛查。其中之一是颌骨囊肿,如果不尽早发现,可能会导致并发症,进而导致毁容和功能丧失。因此,射线图像的处理在识别和定位囊性区域以及提取相关特征以协助临床专家进行进一步分析方面发挥着至关重要的作用。目的:开发一种被称为大地测量活动轮廓的活动轮廓模型的应用程序,以生成全景牙科X射线,即整个口腔的单个二维X射线图像,突出牙齿的规格。方法:该过程包括将OPG图像转换为灰度,使用强度水平切片进行对比度调整,边缘平滑,分割,以及使用形态学大地测量活动轮廓进行囊肿分割,以获得结果。因此,射线图像的处理在识别和定位囊性区域方面起着至关重要的作用。在提取相关特征以协助临床专家进行进一步分析方面至关重要。结论:当存在有效、准确的诊断方法时,治疗和治愈变得简单而具体。基于形态蛇和水平集,旨在通过最小化能量来识别边界。结果:使用结构相似性指数,准确率为97.6%。知识进步:这一过程是有利的,因为它更简单、更快,并且不会出现不稳定问题。形态学方法通过提高稳定性和速度来改善其功能梯度下降。迟滞算法表现出更好的边缘检测性能,显著减少了计算时间和可扩展性。
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引用次数: 0
Dispersion Relation of Triple-chambered Cochlea 三腔耳蜗的色散关系
Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2021-11-04 DOI: 10.46300/91011.2021.15.47
T. Kitamura
We investigated the dispersion relations of the triple-chambered cochlea separated by the basilar membrane and the Reissner's membrane. The slow waves can propagate on the basilar membrane (basilar membrane mode), and also on the Reissner’s membrane (Reisnner’s membrane mode). Most of the previous studies have focused on the mechanics of vibration of the basilar membrane and there are only a few studies on the wave propagation on Reissner’s membrane. In this study, we focused particularly on the Reissner's membrane mode among the many propagation modes and evanescent modes that the structure supports. We analyzed the dispersion of the Reissner’s membrane mode and the basilar membrane mode, and studied their dependency on the position along the cochlea. We also studied how the distance between the Reissner's membrane and the basilar membrane affects the dispersion relations.
我们研究了由基底膜和Reissner膜分隔的三腔耳蜗的色散关系。慢波可以在基底膜上传播(基底膜模式),也可以在Reissner膜上传播。以往的研究大多集中在基底膜的振动力学上,而对Reissner膜上的波传播的研究很少。在这项研究中,我们特别关注结构所支持的许多传播模式和倏逝模式中的Reissner膜模式。我们分析了Reissner膜模式和基底膜模式的色散,并研究了它们对耳蜗位置的依赖性。我们还研究了Reissner膜和基底膜之间的距离如何影响色散关系。
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引用次数: 0
期刊
International Journal of Biology and Biomedical Engineering
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