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Cross-Modal Augmented Transformer for Automated Medical Report Generation 用于自动医疗报告生成的跨模态增强变压器
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-29 DOI: 10.1109/JTEHM.2025.3536441
Yuhao Tang;Ye Yuan;Fei Tao;Minghao Tang
In clinical practice, interpreting medical images and composing diagnostic reports typically involve significant manual workload. Therefore, an automated report generation framework that mimics a doctor’s diagnosis better meets the requirements of medical scenarios. Prior investigations often overlook this critical aspect, primarily relying on traditional image captioning frameworks initially designed for general-domain images and sentences. Despite achieving some advancements, these methodologies encounter two primary challenges. First, the strong noise in blurred medical images always hinders the model of capturing the lesion region. Second, during report writing, doctors typically rely on terminology for diagnosis, a crucial aspect that has been neglected in prior frameworks. In this paper, we present a novel approach called Cross-modal Augmented Transformer (CAT) for medical report generation. Unlike previous methods that rely on coarse-grained features without human intervention, our method introduces a “locate then generate” pattern, thereby improving the interpretability of the generated reports. During the locate stage, CAT captures crucial representations by pre-aligning significant patches and their corresponding medical terminologies. This pre-alignment helps reduce visual noise by discarding low-ranking content, ensuring that only relevant information is considered in the report generation process. During the generation phase, CAT utilizes a multi-modality encoder to reinforce the correlation between generated keywords, retrieved terminologies and regions. Furthermore, CAT employs a dual-stream decoder that dynamically determines whether the predicted word should be influenced by the retrieved terminology or the preceding sentence. Experimental results demonstrate the effectiveness of the proposed method on two datasets.Clinical impact: This work aims to design an automated framework for explaining medical images to evaluate the health status of individuals, thereby facilitating their broader application in clinical settings.Clinical and Translational Impact Statement: In our preclinical research, we develop an automated system for generating diagnostic reports. This system mimics manual diagnostic methods by combining fine-grained semantic alignment with dual-stream decoders.
在临床实践中,解释医学图像和撰写诊断报告通常涉及大量的手工工作量。因此,模仿医生诊断的自动化报告生成框架更能满足医疗场景的需求。之前的研究往往忽略了这一关键方面,主要依赖于传统的图像标题框架,最初是为一般领域的图像和句子设计的。尽管取得了一些进展,但这些方法遇到了两个主要挑战。首先,模糊医学图像中较强的噪声会阻碍模型对病灶区域的捕捉。其次,在撰写报告时,医生通常依赖于诊断术语,这是先前框架中被忽视的一个关键方面。在本文中,我们提出了一种新的方法,称为跨模态增强变压器(CAT)的医疗报告生成。与以前依赖于粗粒度特征而没有人为干预的方法不同,我们的方法引入了“定位然后生成”模式,从而提高了生成报告的可解释性。在定位阶段,CAT通过预先对齐重要补丁及其相应的医学术语来捕获关键表征。这种预对齐通过丢弃低排名的内容来帮助减少视觉噪音,确保在报告生成过程中只考虑相关的信息。在生成阶段,CAT使用多模态编码器来加强生成的关键字、检索的术语和区域之间的相关性。此外,CAT采用双流解码器,动态地确定预测的单词是否应该受到检索术语或前一句的影响。实验结果证明了该方法在两个数据集上的有效性。临床影响:这项工作旨在设计一个自动化框架来解释医学图像,以评估个人的健康状况,从而促进其在临床环境中的更广泛应用。临床和转化影响声明:在我们的临床前研究中,我们开发了一个自动生成诊断报告的系统。该系统通过将细粒度语义对齐与双流解码器相结合来模拟人工诊断方法。
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引用次数: 0
Multi-Branch CNN-LSTM Fusion Network-Driven System With BERT Semantic Evaluator for Radiology Reporting in Emergency Head CTs 基于BERT语义评估器的多分支CNN-LSTM融合网络驱动系统在急诊头部ct中的放射学报告
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-28 DOI: 10.1109/JTEHM.2025.3535676
Selene Tomassini;Damiano Duranti;Abdallah Zeggada;Carlo Cosimo Quattrocchi;Farid Melgani;Paolo Giorgini
The high volume of emergency room patients often necessitates head CT examinations to rule out ischemic, hemorrhagic, or other organic pathologies. A system that enhances the diagnostic efficacy of head CT imaging in emergency settings through structured reporting would significantly improve clinical decision making. Currently, no AI solutions address this need. Thus, our research aims to develop an automatic radiology reporting system by directly analyzing brain anomalies in head CT data. We propose a multi-branch CNN-LSTM fusion network-driven system for enhanced radiology reporting in emergency settings. We preprocessed head CT scans by resizing all slices, selecting those with significant variability, and applying PCA to retain 95% of the original data variance, ultimately saving the most representative five slices for each scan. We linked the reports to their respective slice IDs, divided them into individual captions, and preprocessed each. We performed an 80-20 split of the dataset for ten times, with 15% of the training set used for validation. Our model utilizes a pretrained VGG16, processing groups of five slices simultaneously, and features multiple end-to-end LSTM branches, each specialized in predicting one caption, subsequently combined to form the ordered reports after a BERT-based semantic evaluation. Our system demonstrates effectiveness and stability, with the postprocessing stage refining the syntax of the generated descriptions. However, there remains an opportunity to empower the evaluation framework to more accurately assess the clinical relevance of the automatically-written reports. Part of future work will include transitioning to 3D and developing an improved version based on vision-language models.
急诊病人的高容量往往需要头部CT检查,以排除缺血性、出血或其他器质性病变。一个通过结构化报告来提高紧急情况下头部CT成像诊断效率的系统将显著改善临床决策。目前,还没有人工智能解决方案能够满足这一需求。因此,我们的研究旨在通过直接分析头部CT数据中的脑异常来开发一个自动放射学报告系统。我们提出了一个多分支CNN-LSTM融合网络驱动系统,用于增强紧急情况下的放射学报告。我们对头部CT扫描进行预处理,通过调整所有切片的大小,选择具有显著变异性的切片,并应用PCA保留95%的原始数据方差,最终为每次扫描保留最具代表性的5个切片。我们将报告链接到它们各自的切片id,将它们分成单独的标题,并对每个标题进行预处理。我们对数据集进行了10次80-20分割,其中15%的训练集用于验证。我们的模型使用预训练的VGG16,同时处理5个切片组,并具有多个端到端的LSTM分支,每个分支专门预测一个标题,随后在基于bert的语义评估后组合成有序的报告。我们的系统证明了有效性和稳定性,后处理阶段改进了生成的描述的语法。然而,仍然有机会使评估框架更准确地评估自动编写报告的临床相关性。未来的部分工作将包括过渡到3D和开发基于视觉语言模型的改进版本。
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引用次数: 0
Intelligent Neonatal Blood Perfusion Assessment System Based on Near-Infrared Spectroscopy 基于近红外光谱的智能新生儿血流灌注评估系统
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-22 DOI: 10.1109/JTEHM.2025.3532801
Hsiu-Lin Chen;Bor-Shing Lin;Chieh-Miao Chang;Hao-Wei Chung;Shu-Ting Yang;Bor-Shyh Lin
High-risk infants in the neonatal intensive care unit often encounter the problems with hemodynamic instability, and the poor blood circulation may cause shock or other sequelae. But the appearance of shock is not easy to be noticed in the initial stage, and most of the clinical judgments are subjectively dependent on the experienced physicians. Therefore, how to effectively evaluate the neonatal blood circulation state is important for the treatment in time. Although some instruments, such as laser Doppler flow meter, can estimate the information of blood flow, there is still lack of monitoring systems to evaluate the neonatal blood circulation directly. Based on the technique of near-infrared spectroscopy, an intelligent neonatal blood perfusion assessment system was proposed in this study, to monitor the changes of hemoglobin concentration and tissue oxygen saturation simultaneously and further estimate the neonatal blood perfusion. Several indexes were defined from the changes of hemoglobin parameters under applying and relaxing pressure to obtain the neonatal perfusion information. Moreover, the neural network-based classifier was also used to effectively classify the groups with different blood perfusion states. From the experimental results, the difference between the groups with different blood perfusion states could exactly be reflected on several defined indexes and could be effectively recognized by using the technique of neural network. Clinical and Translational Impact Statement—An intelligent neonatal blood perfusion assessment system was proposed to monitor the changes of hemoglobin concentration and tissue oxygen saturation simultaneously and further estimate the neonatal blood perfusion (Category: Preclinical Research)
高危儿在新生儿重症监护室经常遇到血流动力学不稳定的问题,血液循环不畅可能引起休克或其他后遗症。但休克的表现在初期不易被注意到,临床判断大多主观依赖有经验的医师。因此,如何有效评估新生儿血液循环状态对及时治疗具有重要意义。虽然一些仪器,如激光多普勒血流仪可以估计血流信息,但仍然缺乏直接评估新生儿血液循环的监测系统。本研究基于近红外光谱技术,提出了一种智能新生儿血液灌注评估系统,可同时监测血红蛋白浓度和组织血氧饱和度的变化,进一步估计新生儿血液灌注情况。根据施加压力和放松压力下血红蛋白参数的变化定义几个指标,获得新生儿血流灌注信息。此外,还利用基于神经网络的分类器对不同血流灌注状态的组进行了有效的分类。从实验结果来看,不同血流状态组之间的差异可以准确地反映在几个定义的指标上,并且可以通过神经网络技术有效地识别。临床与转化影响声明-提出一种智能新生儿血液灌注评估系统,用于同时监测血红蛋白浓度和组织氧饱和度的变化,进一步评估新生儿血液灌注情况(类别:临床前研究)
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引用次数: 0
Design and Development of an Integrated Virtual Reality (VR)-Based Training System for Difficult Airway Management 基于虚拟现实(VR)的气道困难管理综合训练系统设计与开发
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2025-01-14 DOI: 10.1109/JTEHM.2025.3529748
Saurabh Jain;Bijoy Dripta Barua Chowdhury;Jarrod M. Mosier;Vignesh Subbian;Kate Hughes;Young-Jun Son
For over 40 years, airway management simulation has been a cornerstone of medical training, aiming to reduce procedural risks for critically ill patients. However, existing simulation technologies often lack the versatility and realism needed to replicate the cognitive and physical challenges of complex airway management scenarios. We developed a novel Virtual Reality (VR)-based simulation system designed to enhance immersive airway management training and research. This system integrates physical and virtual environments with an external sensory framework to capture high-fidelity data on user performance. Advanced calibration techniques ensure precise positional tracking and realistic physics-based interactions, providing a cohesive mixed-reality experience. Validation studies conducted in a dedicated medical training center demonstrated the system’s effectiveness in replicating real-world conditions. Positional calibration accuracy was achieved within 0.1 cm, with parameter calibrations showing no significant discrepancies. Validation using Pre- and post-simulation surveys indicated positive feedback on training aspects, perceived usefulness, and ease of use. These results suggest that the system offers a significant improvement in procedural and cognitive training for high-stakes medical environments.
40多年来,气道管理模拟一直是医疗培训的基石,旨在降低危重患者的手术风险。然而,现有的模拟技术往往缺乏复制复杂气道管理场景的认知和物理挑战所需的多功能性和真实感。我们开发了一种新颖的基于虚拟现实(VR)的仿真系统,旨在增强沉浸式气道管理培训和研究。该系统将物理和虚拟环境与外部感官框架集成在一起,以捕获有关用户性能的高保真数据。先进的校准技术确保精确的位置跟踪和现实的基于物理的交互,提供有凝聚力的混合现实体验。在专门的医疗培训中心进行的验证研究证明了该系统在复制现实世界条件方面的有效性。定位校准精度在0.1 cm以内,参数校准无显著差异。使用模拟前和模拟后调查的验证表明,在培训方面,感知有用性和易用性方面有积极的反馈。这些结果表明,该系统为高风险医疗环境的程序和认知训练提供了显著的改进。
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引用次数: 0
Fusion Model Using Resting Neurophysiological Data to Help Mass Screening of Methamphetamine Use Disorder 利用静息神经生理数据的融合模型帮助大规模筛查甲基苯丙胺使用障碍
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-25 DOI: 10.1109/JTEHM.2024.3522356
Chun-Chuan Chen;Meng-Chang Tsai;Eric Hsiao-Kuang Wu;Shao-Rong Sheng;Jia-Jeng Lee;Yung-En Lu;Shih-Ching Yeh
Methamphetamine use disorder (MUD) is a substance use disorder. Because MUD has become more prevalent due to the COVID-19 pandemic, alternative ways to help the efficiency of mass screening of MUD are important. Previous studies used electroencephalogram (EEG), heart rate variability (HRV), and galvanic skin response (GSR) aberrations during the virtual reality (VR) induction of drug craving to accurately separate patients with MUD from the healthy controls. However, whether these abnormalities present without induction of drug-cue reactivity to enable separation between patients and healthy subjects remains unclear. Here, we propose a clinically comparable intelligent system using the fusion of 5–channel EEG, HRV, and GSR data during resting state to aid in detecting MUD. Forty-six patients with MUD and 26 healthy controls were recruited and machine learning methods were employed to systematically compare the classification results of different fusion models. The analytic results revealed that the fusion of HRV and GSR features leads to the most accurate separation rate of 79%. The use of EEG, HRV, and GSR features provides more robust information, leading to relatively similar and enhanced accuracy across different classifiers. In conclusion, we demonstrated that a clinically applicable intelligent system using resting-state EEG, ECG, and GSR features without the induction of drug cue reactivity enhances the detection of MUD. This system is easy to implement in the clinical setting and can save a lot of time on setting up and experimenting while maintaining excellent accuracy to assist in mass screening of MUD.
甲基苯丙胺使用障碍(Methamphetamine use disorder, MUD)是一种物质使用障碍。由于COVID-19大流行使MUD变得更加普遍,因此提高MUD大规模筛查效率的替代方法非常重要。先前的研究使用虚拟现实(VR)诱导药物渴望时的脑电图(EEG)、心率变异性(HRV)和皮肤电反应(GSR)畸变来准确区分MUD患者和健康对照组。然而,这些异常是否没有引起药物提示反应,从而使患者与健康受试者分离,目前尚不清楚。在这里,我们提出了一种临床可比较的智能系统,该系统使用静息状态下的5通道EEG, HRV和GSR数据融合来帮助检测MUD。选取46例MUD患者和26例健康对照者,采用机器学习方法系统比较不同融合模型的分类结果。分析结果表明,HRV和GSR特征的融合使分离准确率达到79%。EEG、HRV和GSR特征的使用提供了更鲁棒的信息,导致不同分类器之间相对相似和提高的准确性。总之,我们证明了一个临床适用的智能系统,利用静息状态EEG, ECG和GSR特征,而不诱导药物线索反应性,可以增强对MUD的检测。该系统易于在临床环境中实施,可以节省大量的设置和实验时间,同时保持良好的准确性,以协助大规模筛查MUD。
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引用次数: 0
IEEE JOURNAL OF TRANSLATIONAL ENGINEERING IN HEALTH AND MEDICINE Ieee健康与医学转化工程杂志
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-13 DOI: 10.1109/JTEHM.2024.3516335
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引用次数: 0
>IEEE Journal on Translational Engineering in Medicine and Biology publication information >IEEE 医学与生物学转化工程期刊》出版信息
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-13 DOI: 10.1109/JTEHM.2024.3513733
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引用次数: 0
List of Reviewers 审稿人名单
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-11 DOI: 10.1109/JTEHM.2024.3507892
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引用次数: 0
MRI-Driven Longitudinal Studies of Hippocampal Alterations During the Initial Cognitive Decline 最初认知衰退期间海马改变的mri驱动纵向研究
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-12-02 DOI: 10.1109/JTEHM.2024.3510429
Qunxi Dong;Yuhang Sheng;Junru Zhu;Honghong Liu;Zhigang Li;Jingyu Liu;Yalin Wang;Bin Hu
Based on available magnetic resonance imaging (MRI) studies, hippocampal alteration is one of the hallmarks during cognitive decline. However, the longitudinal hippocampal morphometric changes during the initial cognitive decline are unclear. Exploring a validated biomarker with high clinical relevance is urgent. This work proposed an automated MRI-driven longitudinal hippocampal alteration analysis system (LHAAS), which consists of hippocampal segmentation, reconstruction, registration, multivariate morphometric feature extraction, and longitudinal analysis of hippocampal morphometric and volumetric differences between groups. LHAAS was applied on two groups: cognitive unimpaired (CU) participants who maintained cognitive unimpaired (non-Progressors), and participants who converted to MCI during the following four years (Progressors). LHAAS can detect and visualize subtle deformations in the bilateral hippocampus of CU progressors four years before they show initial cognitive decline. For CU progressors, hippocampal atrophy initially occurs at the CA1 subregion and then along with disease progression, spreading to the CA2-3 and Subiculum subregion, exhibiting a left-greater-than-right trend. The volumetric analyses showed similar results. Besides, hippocampal subregions highly correlated with clinical measurement were identified by correlation analysis. LHAAS can accurately reflect the small hippocampal subregional atrophy at preclinical AD. This proposed system can track the longitudinal hippocampal alterations in the early stages of AD and provide insights for early intervention. Clinical and Translational Impact Statement: LHAAS offers early detection of subtle hippocampal alterations at preclinical AD. This advance enables pathological research and timely interventions to potentially improve patient outcomes in clinical implementation.
根据现有的磁共振成像(MRI)研究,海马改变是认知能力下降的标志之一。然而,在最初的认知衰退期间,海马的纵向形态变化尚不清楚。探索具有高度临床相关性的有效生物标志物是迫切需要的。本研究提出了一种mri驱动的海马纵向改变分析系统(LHAAS),该系统包括海马分割、重建、配准、多变量形态特征提取以及海马形态和体积差异纵向分析。LHAAS应用于两组:认知未受损(CU)参与者保持认知未受损(非进展者),以及在接下来的四年中转换为MCI的参与者(进展者)。LHAAS可以在CU进展者表现出初始认知能力下降的4年前检测并可视化其双侧海马体的细微变形。对于CU进展者,海马萎缩最初发生在CA1亚区,然后随着疾病进展,向CA2-3和下托亚区扩散,呈现左大于右的趋势。体积分析也显示了类似的结果。通过相关分析,发现与临床测量高度相关的海马亚区。LHAAS能准确反映阿尔茨海默病临床前海马小分区萎缩情况。该系统可以跟踪阿尔茨海默病早期海马的纵向变化,并为早期干预提供见解。临床和转化影响声明:LHAAS可以在临床前AD中早期检测到细微的海马改变。这一进展使病理研究和及时干预能够潜在地改善临床实施中的患者结果。
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引用次数: 0
Antidepressant Treatment Response Prediction With Early Assessment of Functional Near-Infrared Spectroscopy and Micro-RNA 功能近红外光谱和微rna早期评估抗抑郁药物治疗反应预测
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2024-11-26 DOI: 10.1109/JTEHM.2024.3506556
Lok Hua Lee;Cyrus Su Hui Ho;Yee Ling Chan;Gabrielle Wann Nii Tay;Cheng-Kai Lu;Tong Boon Tang
While functional near-infrared spectroscopy (fNIRS) had previously been suggested for major depressive disorder (MDD) diagnosis, the clinical application to predict antidepressant treatment response (ATR) is still unclear. To address this, the aim of the current study is to investigate MDD ATR at three response levels using fNIRS and micro-ribonucleic acids (miRNAs). Our proposed algorithm includes a custom inter-subject variability reduction based on the principal component analysis (PCA). The principal components of extracted features are first identified for non-responders’ group. The first few components that sum up to 99% of explained variance are discarded to minimize inter-subject variability while the remaining projection vectors are applied on all response groups (24 non-responders, 15 partial-responders, 13 responders) to obtain their relative projections in feature space. The entire algorithm achieved a better performance through the radial basis function (RBF) support vector machine (SVM), with 82.70% accuracy, 78.44% sensitivity, 86.15% precision, and 91.02% specificity, respectively, when compared with conventional machine learning approaches that combine clinical, sociodemographic and genetic information as the predictor. The performance of the proposed custom algorithm suggests the prediction of ATR can be improved with multiple features sources, provided that the inter-subject variability is properly addressed, and can be an effective tool for clinical decision support system in MDD ATR prediction. Clinical and Translational Impact Statement—The fusion of neuroimaging fNIRS features and miRNA profiles significantly enhances the prediction accuracy of MDD ATR. The minimally required features also make the personalized medicine more practical and realizable
虽然功能性近红外光谱(fNIRS)先前已被建议用于重度抑郁症(MDD)的诊断,但在预测抗抑郁药物治疗反应(ATR)方面的临床应用仍不清楚。为了解决这个问题,本研究的目的是利用近红外光谱和微核糖核酸(mirna)在三个反应水平上研究MDD ATR。我们提出的算法包括基于主成分分析(PCA)的自定义主题间变异性减少。首先对无反应组进行特征提取的主成分识别。为了最大限度地减少受试者间的可变性,将前几个合计占解释方差99%的分量丢弃,而将剩余的投影向量应用于所有反应组(24个无反应者,15个部分反应者,13个反应者),以获得它们在特征空间中的相对投影。整个算法通过径向基函数(RBF)支持向量机(SVM)获得了更好的性能,与结合临床、社会人口学和遗传信息作为预测因子的传统机器学习方法相比,准确率为82.70%,灵敏度为78.44%,精度为86.15%,特异性为91.02%。所提出的自定义算法的性能表明,在适当处理受试者间可变性的情况下,可以使用多个特征源改进ATR的预测,并且可以成为临床决策支持系统在MDD ATR预测中的有效工具。临床和转化影响声明-神经影像学fNIRS特征和miRNA谱的融合显著提高了MDD ATR的预测准确性。最低要求的功能也使个性化医疗更具实用性和可实现性
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引用次数: 0
期刊
IEEE Journal of Translational Engineering in Health and Medicine-Jtehm
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