首页 > 最新文献

Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology最新文献

英文 中文
Effect of the sdc4 gene knockdown on muscle development in zebrafish sdc4基因敲低对斑马鱼肌肉发育的影响
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-25 DOI: 10.1016/j.cbpb.2025.111171
Ai-Jin Wang, Chang Du, Hong Liu, Huan-Ling Wang
The growth and regeneration of skeletal muscle are closely related to syndecan-4 (Sdc4), which is a type I transmembrane heparan sulfate proteoglycan belonging to the syndecan family. However, it remains unclear how the sdc4 gene affects fish muscle development. Therefore, an sdc4 knockdown zebrafish line (sdc4−/−) was generated by CRISPR/Cas9 technology in this study, and its phenotypes were analyzed. The results revealed that sdc4−/− zebrafish exhibited reduced body length and weight compared to the wild-type (WT) at 90 days post fertilization (dpf). Furthemore, sdc4−/− zebrafish also showed a significantly larger number of muscle fibers, and significantly reduced individual muscle fiber cross-sectional area. The mRNA expression levels of genes associated with myogenic regulatory factors (MRFs) and the wnt/β-catenin pathway were all significantly downregulated. Based on dual luciferase reporter assays, sdc4 gene expression was regulated by the transcription factor myocyte enhancer factor 2aa (Mef2aa) and miR-141-3p, which bind to its promoter and 3′ untranslated region (UTR), respectively. Additionally, the reduced average swimming speed and distance observed in sdc4−/− zebrafish at 90 dpf were concomitant with a significant downregulation of mitochondrial respiratory chain complex-related genes and a reduction in ATP concentration. This research aids understanding of sdc4 function in fish and may provide a new perspective for studying the molecular mechanisms of muscle growth and development.
骨骼肌的生长再生与syndecan-4 (Sdc4)密切相关,syndecan-4是一种属于syndecan家族的I型跨膜硫酸肝素蛋白多糖。然而,目前尚不清楚sdc4基因是如何影响鱼类肌肉发育的。因此,本研究利用CRISPR/Cas9技术生成sdc4敲低斑马鱼系(sdc4−/−),并对其表型进行分析。结果表明,与野生型(WT)相比,sdc4−/−斑马鱼在受精后90天(dpf)的体长和体重都有所减少。此外,sdc4−/−斑马鱼的肌纤维数量也显著增加,个体肌纤维横截面积显著减少。与肌生成调节因子(MRFs)和wnt/β-catenin通路相关的基因mRNA表达水平均显著下调。基于双荧光素酶报告基因分析,sdc4基因的表达受到转录因子myocyte enhancer factor 2aa (Mef2aa)和miR-141-3p的调控,这两个转录因子分别与sdc4的启动子和3′非翻译区(UTR)结合。此外,在90 dpf时,sdc4 - / -斑马鱼的平均游泳速度和游泳距离的降低伴随着线粒体呼吸链复合物相关基因的显著下调和ATP浓度的降低。该研究有助于了解sdc4在鱼类中的功能,并为研究肌肉生长发育的分子机制提供了新的视角。
{"title":"Effect of the sdc4 gene knockdown on muscle development in zebrafish","authors":"Ai-Jin Wang,&nbsp;Chang Du,&nbsp;Hong Liu,&nbsp;Huan-Ling Wang","doi":"10.1016/j.cbpb.2025.111171","DOIUrl":"10.1016/j.cbpb.2025.111171","url":null,"abstract":"<div><div>The growth and regeneration of skeletal muscle are closely related to syndecan-4 (Sdc4), which is a type I transmembrane heparan sulfate proteoglycan belonging to the syndecan family. However, it remains unclear how the <em>sdc4</em> gene affects fish muscle development. Therefore, an <em>sdc4</em> knockdown zebrafish line (<em>sdc4</em><sup><em>−/−</em></sup>) was generated by CRISPR/Cas9 technology in this study, and its phenotypes were analyzed. The results revealed that <em>sdc4</em><sup><em>−/−</em></sup> zebrafish exhibited reduced body length and weight compared to the wild-type (WT) at 90 days post fertilization (dpf). Furthemore, <em>sdc4</em><sup><em>−/−</em></sup> zebrafish also showed a significantly larger number of muscle fibers, and significantly reduced individual muscle fiber cross-sectional area. The mRNA expression levels of genes associated with myogenic regulatory factors (MRFs) and the <em>wnt/β-catenin</em> pathway were all significantly downregulated. Based on dual luciferase reporter assays, <em>sdc4</em> gene expression was regulated by the transcription factor myocyte enhancer factor 2aa (Mef2aa) and miR-141-3p, which bind to its promoter and 3′ untranslated region (UTR), respectively. Additionally, the reduced average swimming speed and distance observed in <em>sdc4</em><sup><em>−/−</em></sup> zebrafish at 90 dpf were concomitant with a significant downregulation of mitochondrial respiratory chain complex-related genes and a reduction in ATP concentration. This research aids understanding of <em>sdc4</em> function in fish and may provide a new perspective for studying the molecular mechanisms of muscle growth and development.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"281 ","pages":"Article 111171"},"PeriodicalIF":1.8,"publicationDate":"2025-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145416968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of effective plant-based oils for use in aquafeed: An evaluation of impact on gamete quality and developmental success using zebrafish (Danio rerio) as a screening organism 鉴定用于水产饲料的有效植物油:以斑马鱼(Danio rerio)作为筛选生物对配子质量和发育成功的影响的评估
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-24 DOI: 10.1016/j.cbpb.2025.111169
Seyed-Mohammadreza Samaee , Alicia Estévez , Louis R. D'Abramo
To evaluate the effectiveness of zebrafish as a screening system for identifying appropriate plant oils (POs) for aquafeed, Artemia nauplii (AN) were enriched with three single- cultivar olive oils (OO): Koroneiki, Parseh, and Arghavan. The resulting AN (ANKor, ANPar, ANArg, and AN36 [36 h starved AN, control]) were then fed to 360 fish (3.5 cm) for one month. The fatty acid (FA) profile of the AN was reflected in the ova and influenced both sperm motility and density, which in turn affected the fertilizability. The highest fertilizability and accelerated hatching were observed in the ANKor group. In this group, fish produced sperms with the highest motility and ova characterized by higher levels of 18:1n-9, 22:6n-3/20:5n-3 and lower 18:3n-3/18:2n-6, 20:5n-3/20:4n-6, 14:0, 16:1n-7, and 18:1n-7. Embryos produced by pairs fed ANArg exhibited delayed hatching but developed into larvae with the highest survival. Changes in ova FA and sperm quality indicate that, in zebrafish, gametes are directly influenced by parental diet, making the species an effective rapid screening system. Diet-induced changes in ova FA resulted in significant effects on hatchability, larval body morphometrics (BM), and survival. These findings indicate that zebrafish performance across embryonic-larval stages provides a sensitive model for screening POs, with survival serving as a conclusive endpoint. Survival was primarily linked to the ratio between LC-PUFAs and other FAs in ova. POs promoting these interactions are superior for aquafeeds. These ratios also guide broodstock diets to improve larval success and nutritional programming.
为了评价斑马鱼作为水产饲料植物油(POs)筛选系统的有效性,我们用Koroneiki、Parseh和Arghavan三种单一品种橄榄油(OO)富集了Artemia nauplii (AN)。然后将得到的AN (ANKor、ANPar、ANArg和AN36[饥饿36 h的AN,对照])喂给360条鱼(3.5 cm)一个月。AN的脂肪酸谱反映在卵子中,影响精子的活力和密度,进而影响受精率。ANKor组受精率最高,孵化速度加快。在该组中,鱼产生的精子活力最高,卵子的18:1n- 9,22:6 n-3/20:5n-3含量较高,18:3n-3/18:2n-6、20:5n-3/20:4n-6、14:0、16:1n-7和18:1n-7含量较低。配对饲喂ANArg产生的胚胎孵化延迟,但发育成幼虫存活率最高。卵子FA和精子质量的变化表明,在斑马鱼中,配子直接受到亲代饮食的影响,使该物种成为一个有效的快速筛选系统。饮食诱导的卵FA变化对孵化率、幼虫体形态计量学(BM)和存活率有显著影响。这些发现表明,斑马鱼在胚胎-幼虫阶段的表现为筛选POs提供了一个敏感的模型,生存是一个决定性的终点。存活主要与卵子中LC-PUFAs和其他FAs的比例有关。促进这些相互作用的POs对于水产饲料来说是优越的。这些比例还可以指导种鱼的饮食,以提高幼虫成功率和营养规划。
{"title":"Identification of effective plant-based oils for use in aquafeed: An evaluation of impact on gamete quality and developmental success using zebrafish (Danio rerio) as a screening organism","authors":"Seyed-Mohammadreza Samaee ,&nbsp;Alicia Estévez ,&nbsp;Louis R. D'Abramo","doi":"10.1016/j.cbpb.2025.111169","DOIUrl":"10.1016/j.cbpb.2025.111169","url":null,"abstract":"<div><div>To evaluate the effectiveness of zebrafish as a screening system for identifying appropriate plant oils (POs) for aquafeed, <em>Artemia</em> nauplii (AN) were enriched with three single- cultivar olive oils (OO): Koroneiki, Parseh, and Arghavan. The resulting AN (ANKor, ANPar, ANArg, and AN36 [36 h starved AN, control]) were then fed to 360 fish (3.5 cm) for one month. The fatty acid (FA) profile of the AN was reflected in the ova and influenced both sperm motility and density, which in turn affected the fertilizability. The highest fertilizability and accelerated hatching were observed in the ANKor group. In this group, fish produced sperms with the highest motility and ova characterized by higher levels of 18:1<em>n</em>-9, 22:6<em>n</em>-3/20:5<em>n</em>-3 and lower 18:3<em>n</em>-3/18:2<em>n</em>-6, 20:5<em>n</em>-3/20:4<em>n</em>-6, 14:0, 16:1<em>n</em>-7, and 18:1<em>n</em>-7. Embryos produced by pairs fed ANArg exhibited delayed hatching but developed into larvae with the highest survival. Changes in ova FA and sperm quality indicate that, in zebrafish, gametes are directly influenced by parental diet, making the species an effective rapid screening system. Diet-induced changes in ova FA resulted in significant effects on hatchability, larval body morphometrics (BM), and survival. These findings indicate that zebrafish performance across embryonic-larval stages provides a sensitive model for screening POs, with survival serving as a conclusive endpoint. Survival was primarily linked to the ratio between LC-PUFAs and other FAs in ova. POs promoting these interactions are superior for aquafeeds. These ratios also guide broodstock diets to improve larval success and nutritional programming.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"281 ","pages":"Article 111169"},"PeriodicalIF":1.8,"publicationDate":"2025-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145416969","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Taurine in Ruditapes philippinarum: tissue distribution, developmental dynamics and metabolic mechanism 菲律宾蛤的牛磺酸:组织分布、发育动力学和代谢机制。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-23 DOI: 10.1016/j.cbpb.2025.111170
Yang Liu , Kai Liao , Yang Zhang , Qi Hu , Xiaoxue He , Fengjun Xie , Jilin Xu
Bivalves, although often overlooked as a source of taurine in the diet, have tissue levels of taurine that are notably higher than those in most vertebrates. However, the handling and metabolism of taurine in bivalves is still poorly understood. In the present study, we analyzed the tissue distribution of taurine in the clam Ruditapes philippinarum and evaluated the transcription of genes involved in its metabolism. Taurine concentrations differed significantly among tissues, with the gill displaying tissue concentrations more than three times higher than those in the digestive gland. Furthermore, it was demonstrated that taurine concentrations in microalgal feeds commonly employed in aquaculture are low. Clams may mitigate this deficiency by progressively accumulating taurine or related amino acids through prolonged consumption of microalgae. Additionally, our results confirmed that clams maintain continuous taurine biosynthesis throughout development, with the highest expression of taurine biosynthesis-related genes observed at the pediveliger stage. The amino acid composition of clams demonstrated significant dynamic variations throughout their development, with fluctuations in taurine precursors (cysteine, methionine, and serine) closely aligning with the expression patterns of genes involved in taurine biosynthesis. Collectively, these findings offer new insights into the tissue distribution of taurine in bivalves, emphasizing the significance of sustained taurine biosynthesis and accumulation in supporting their developmental processes and physiological functions.
双壳类动物虽然经常被忽视为饮食中牛磺酸的来源,但其组织中牛磺酸的含量明显高于大多数脊椎动物。然而,双壳类动物对牛磺酸的处理和代谢仍然知之甚少。本研究分析了菲律宾蛤(Ruditapes philippinarum)中牛磺酸的组织分布,并对其代谢相关基因的转录进行了评价。不同组织的牛磺酸浓度差别很大,鳃的牛磺酸浓度是消化腺的三倍以上。此外,水产养殖中常用的微藻饲料中的牛磺酸浓度较低。蛤蜊可以通过长时间食用微藻逐渐积累牛磺酸或相关氨基酸来减轻这种缺陷。此外,我们的研究结果证实,蛤在整个发育过程中保持持续的牛磺酸生物合成,在幼体发育阶段观察到牛磺酸生物合成相关基因的最高表达。蛤的氨基酸组成在其发育过程中表现出显著的动态变化,牛磺酸前体(半胱氨酸、蛋氨酸和丝氨酸)的波动与牛磺酸生物合成相关基因的表达模式密切相关。总的来说,这些发现为双壳类动物牛磺酸的组织分布提供了新的见解,强调了牛磺酸的持续生物合成和积累在支持其发育过程和生理功能中的重要性。
{"title":"Taurine in Ruditapes philippinarum: tissue distribution, developmental dynamics and metabolic mechanism","authors":"Yang Liu ,&nbsp;Kai Liao ,&nbsp;Yang Zhang ,&nbsp;Qi Hu ,&nbsp;Xiaoxue He ,&nbsp;Fengjun Xie ,&nbsp;Jilin Xu","doi":"10.1016/j.cbpb.2025.111170","DOIUrl":"10.1016/j.cbpb.2025.111170","url":null,"abstract":"<div><div>Bivalves, although often overlooked as a source of taurine in the diet, have tissue levels of taurine that are notably higher than those in most vertebrates. However, the handling and metabolism of taurine in bivalves is still poorly understood. In the present study, we analyzed the tissue distribution of taurine in the clam <em>Ruditapes philippinarum</em> and evaluated the transcription of genes involved in its metabolism. Taurine concentrations differed significantly among tissues, with the gill displaying tissue concentrations more than three times higher than those in the digestive gland. Furthermore, it was demonstrated that taurine concentrations in microalgal feeds commonly employed in aquaculture are low. Clams may mitigate this deficiency by progressively accumulating taurine or related amino acids through prolonged consumption of microalgae. Additionally, our results confirmed that clams maintain continuous taurine biosynthesis throughout development, with the highest expression of taurine biosynthesis-related genes observed at the pediveliger stage. The amino acid composition of clams demonstrated significant dynamic variations throughout their development, with fluctuations in taurine precursors (cysteine, methionine, and serine) closely aligning with the expression patterns of genes involved in taurine biosynthesis. Collectively, these findings offer new insights into the tissue distribution of taurine in bivalves, emphasizing the significance of sustained taurine biosynthesis and accumulation in supporting their developmental processes and physiological functions.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"281 ","pages":"Article 111170"},"PeriodicalIF":1.8,"publicationDate":"2025-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145370579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Delta/notch signaling regulates blastema formation during limb regeneration in Eriocheir sinensis Delta/notch信号调控中华绒螯蟹肢体再生过程中胚基形成。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-19 DOI: 10.1016/j.cbpb.2025.111168
Hao Li , Weijia Liu , Lei Zhu , Libo Hou , Xianghui Kong
Limb autotomy and regeneration represent specialized adaptive responses employed by crustaceans to cope with threats from other animals or environmental stress. However, the molecular regulatory mechanisms underlying these adaptations remain poorly understood. In this study, we established a limb autotomy and regeneration model in Eriocheir sinensis, characterized in detail the morphological and structural features of regenerated limbs post-amputation, analyzed expression patterns of key components of the Notch signaling pathway genes, and evaluated their functional roles during limb regeneration utilizing long-term RNA interference (RNAi) technology. Specifically, the regenerative blastema appeared approximately 14 days post- amputation, with both the receptor EsNotch and the ligand EsDelta expressed across distinct stages of limb regeneration and exhibiting distinct expression patterns. Notably, both genes were significantly up-regulated during the blastema growth stage. Subsequently, we observed that long-term knockdown of either EsNotch or EsDelta significantly suppressed the formation of blastema during limb regeneration and increased crab mortality. Furthermore, we found that their silencing triggered the down-regulation of genes involved in cell proliferation, differentiation, and other regeneration-related processes. Overall, our findings underscore the critical functional role of Notch signaling in crab limb regeneration via modulation of regeneration-related gene expression, significantly advancing understanding of molecular mechanisms underlying crustacean limb regeneration and paving the way for future regenerative biology research.
肢体自切和再生是甲壳类动物为应对来自其他动物的威胁或环境压力而采取的特殊适应反应。然而,这些适应的分子调控机制仍然知之甚少。本研究建立了中华绒螯蟹自断肢体再生模型,详细表征了截肢后再生肢体的形态和结构特征,分析了Notch信号通路关键组分基因的表达模式,并利用长时程RNA干扰(RNAi)技术评估了其在肢体再生中的功能作用。具体来说,再生胚在截肢后大约14天出现,受体EsNotch和配体EsDelta在肢体再生的不同阶段表达,并表现出不同的表达模式。值得注意的是,这两个基因在胚芽生长阶段均显著上调。随后,我们观察到,长期敲低EsNotch或EsDelta显著抑制了螃蟹肢体再生过程中囊胚的形成,并增加了螃蟹的死亡率。此外,我们发现它们的沉默触发了参与细胞增殖、分化和其他再生相关过程的基因的下调。总之,我们的研究结果强调了Notch信号通过调控再生相关基因表达在螃蟹肢体再生中的关键功能作用,显著推进了对甲壳类动物肢体再生分子机制的理解,并为未来的再生生物学研究铺平了道路。
{"title":"Delta/notch signaling regulates blastema formation during limb regeneration in Eriocheir sinensis","authors":"Hao Li ,&nbsp;Weijia Liu ,&nbsp;Lei Zhu ,&nbsp;Libo Hou ,&nbsp;Xianghui Kong","doi":"10.1016/j.cbpb.2025.111168","DOIUrl":"10.1016/j.cbpb.2025.111168","url":null,"abstract":"<div><div>Limb autotomy and regeneration represent specialized adaptive responses employed by crustaceans to cope with threats from other animals or environmental stress. However, the molecular regulatory mechanisms underlying these adaptations remain poorly understood. In this study, we established a limb autotomy and regeneration model in <em>Eriocheir sinensis</em>, characterized in detail the morphological and structural features of regenerated limbs post-amputation, analyzed expression patterns of key components of the Notch signaling pathway genes, and evaluated their functional roles during limb regeneration utilizing long-term RNA interference (RNAi) technology. Specifically, the regenerative blastema appeared approximately 14 days post- amputation, with both the receptor <em>Es</em>Notch and the ligand <em>Es</em>Delta expressed across distinct stages of limb regeneration and exhibiting distinct expression patterns. Notably, both genes were significantly up-regulated during the blastema growth stage. Subsequently, we observed that long-term knockdown of either <em>Es</em>Notch or <em>Es</em>Delta significantly suppressed the formation of blastema during limb regeneration and increased crab mortality. Furthermore, we found that their silencing triggered the down-regulation of genes involved in cell proliferation, differentiation, and other regeneration-related processes. Overall, our findings underscore the critical functional role of Notch signaling in crab limb regeneration via modulation of regeneration-related gene expression, significantly advancing understanding of molecular mechanisms underlying crustacean limb regeneration and paving the way for future regenerative biology research.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"281 ","pages":"Article 111168"},"PeriodicalIF":1.8,"publicationDate":"2025-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145350207","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Myomaker is regulated by miR-489 and miR-24-3p, and controls fusion of myoblasts in the gynogenetic blunt snout bream Myomaker受miR-489和miR-24-3p的调控,在雌性发育钝口鲷中控制成肌细胞的融合。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-12 DOI: 10.1016/j.cbpb.2025.111167
Siyao Weng , Mingguang Hu , Wangwang Ji , Ya Zeng , Jie Tang , Rui Dai , Ziqin Liu , Qinbo Qin , Ting Yi , Wuhui Li , Min Tao , Chun Zhang , Qizhi Liu , Ping Wu , Shaojun Liu
The fusion process of myoblasts constitutes a critical phase in skeletal muscle myogenesis. The recently identified transmembrane protein Myomaker, which is muscle-specific, plays an indispensable role in myoblast fusion. However, the regulatory mechanisms of its expression in gynogenetic fish remain unclear. Spermatozoa of the Chinese perch (Siniperca chuatsi, CP, ♂) were used to induce eggs of the blunt snout bream (Megalobrama amblycephala, BSB, ♀) to produce the gynogenetic blunt snout bream (GBSB) with inter-order species hybridization. In our investigation, combined prediction and dual luciferase analysis demonstrated direct targeting of the Myomaker 3’-UTR by the microRNA's miR-24-3p and miR-489. Following antagomiR-489 and antagomiR-24-3p injection into GBSB, muscle fibers exhibited increased diameter and nuclear content, while molecular analysis showed that Myomaker expression was promoted and expression of myogenic factors (Myf5, MyoD, MyoG) was inhibited. Our results indicate that the targeted repression of Myomaker expression via binding of miR-489 or miR-24-3p to its 3′-UTR is associated with the inhibition of myoblast fusion, thereby potentially contributing to the suppression of skeletal muscle proliferation in GBSB.
成肌细胞的融合过程是骨骼肌肌发生的关键阶段。最近发现的跨膜蛋白Myomaker是肌肉特异性的,在成肌细胞融合中起着不可或缺的作用。然而,其在雌性发育鱼类中的表达调控机制尚不清楚。用中华鲈鱼(sininiperca chuatsi, CP,♂)的精子诱导钝头鲷(Megalobrama amblycepphala, BSB,♀)的卵,产生雌性钝头鲷(GBSB)。在我们的研究中,联合预测和双荧光素酶分析表明,microRNA的miR-24-3p和miR-489直接靶向Myomaker 3'-UTR。anagomir -489和antagomiR-24-3p注射到GBSB后,肌纤维直径和核含量增加,分子分析显示Myomaker表达增加,Myf5、MyoD、MyoG表达抑制。我们的研究结果表明,通过miR-489或miR-24-3p结合其3'-UTR靶向抑制Myomaker表达与抑制成肌细胞融合有关,从而可能有助于抑制GBSB骨骼肌增殖。
{"title":"Myomaker is regulated by miR-489 and miR-24-3p, and controls fusion of myoblasts in the gynogenetic blunt snout bream","authors":"Siyao Weng ,&nbsp;Mingguang Hu ,&nbsp;Wangwang Ji ,&nbsp;Ya Zeng ,&nbsp;Jie Tang ,&nbsp;Rui Dai ,&nbsp;Ziqin Liu ,&nbsp;Qinbo Qin ,&nbsp;Ting Yi ,&nbsp;Wuhui Li ,&nbsp;Min Tao ,&nbsp;Chun Zhang ,&nbsp;Qizhi Liu ,&nbsp;Ping Wu ,&nbsp;Shaojun Liu","doi":"10.1016/j.cbpb.2025.111167","DOIUrl":"10.1016/j.cbpb.2025.111167","url":null,"abstract":"<div><div>The fusion process of myoblasts constitutes a critical phase in skeletal muscle myogenesis. The recently identified transmembrane protein Myomaker, which is muscle-specific, plays an indispensable role in myoblast fusion. However, the regulatory mechanisms of its expression in gynogenetic fish remain unclear. Spermatozoa of the Chinese perch (<em>Siniperca chuatsi,</em> CP, ♂) were used to induce eggs of the blunt snout bream (<em>Megalobrama amblycephala</em>, BSB, ♀) to produce the gynogenetic blunt snout bream (GBSB) with inter-order species hybridization. In our investigation, combined prediction and dual luciferase analysis demonstrated direct targeting of the <em>Myomaker</em> 3’-UTR by the microRNA's miR-24-3p and miR-489. Following antagomiR-489 and antagomiR-24-3p injection into GBSB, muscle fibers exhibited increased diameter and nuclear content, while molecular analysis showed that <em>Myomaker</em> expression was promoted and expression of myogenic factors (<em>Myf5</em>, <em>MyoD</em>, <em>MyoG</em>) was inhibited. Our results indicate that the targeted repression of <em>Myomaker</em> expression via binding of miR-489 or miR-24-3p to its 3′-UTR is associated with the inhibition of myoblast fusion, thereby potentially contributing to the suppression of skeletal muscle proliferation in GBSB.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"281 ","pages":"Article 111167"},"PeriodicalIF":1.8,"publicationDate":"2025-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145294408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Combined physiological effects of high temperature and salinity stress on genetically improved farmed tilapia (Oreochromis niloticus) reared in inland saline water 高温和盐度胁迫对内陆咸水养殖转基因罗非鱼的综合生理影响。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-03 DOI: 10.1016/j.cbpb.2025.111165
Shivangi Bhatt , N.P. Sahu , Subodh Gupta , Sreedharan Krishnan , Satyakumar Akhila , T. Paul Nathaniel , Tincy Varghese
Freshwater scarcity and increasing salinisation of inland water bodies pose significant challenges to agriculture and traditional freshwater aquaculture. Using inland saline water (ISW) for aquaculture offers a promising option to expand farming into salt-affected and non-arable regions. An experimental trial (60 days) was conducted to evaluate the combined effect of temperature and ISW of varying salinities on genetically improved farmed tilapia (GIFT) fingerlings (initial weight: 2.73 ± 0.02 g). Fish were distributed randomly across 6 treatments in triplicate tanks (n=15/tank). The experiment included combinations of two temperatures (Ambient: 28.5 ± 0.39 °C, AT; High: 33.5 ± 0.17 °C, HT) and three salinities (Freshwater, 0-2.25 ppt; ISW, 10 ppt; ISW, 15 ppt). Growth parameters, survival, osmoregulatory parameters and stress markers were analysed. The temperature and salinity interaction was significant, with the poorest growth and survival in the HT X 15 group. Serum osmolality and ions (Na+, Ca2+ and Cl-) increased progressively with salinity, and were further elevated at HT, while K+ showed the opposite trend. mRNA expression of branchial ion transporters such as sodium potassium ATPase, nka1α, and chloride channel, clc2, showed an increase with salinity, while aquaporin, aqp1, was downregulated. Serum stress markers (cortisol and glucose) increased dose-dependently with both stressors. Serum thyroid hormones declined, reaching minimum levels at HT X 15. Antioxidant enzymes showed tissue-specific responses: liver antioxidant enzymes increased 3- 4 fold at HT X 15, while gill enzymes showed moderate elevation. Hepatic hsp70 gene expression was upregulated (3-fold) in the HT X 15 group. These findings help define environmental limits to support fish health, growth, and sustainability in inland saline aquaculture under thermal and salinity stress.
淡水短缺和内陆水体日益盐碱化对水产养殖构成重大挑战。利用内陆咸水(ISW)进行水产养殖为将农业扩展到受盐影响和非耕地地区提供了一个有希望的选择。通过60 d的试验,研究了温度和不同盐度对吉富罗非鱼(GIFT)鱼种(初始体重2.73±0.02 g)的综合影响。鱼被随机分布在6个处理中,放置在3个重复的鱼缸中(n=15/鱼缸)。实验包括两种温度(常温28.5±0.39°C, AT;高温33.5±0.17°C, HT)和三种盐度(淡水0-2.25 ppt; ISW 10 ppt; ISW 15 ppt)的组合。分析了生长参数、存活率、渗透调节参数和胁迫标志物。温度和盐度交互作用显著,htx15组生长和成活率最差。血清渗透压和离子(Na+、Ca2+和Cl-)随盐度逐渐升高,在高温下进一步升高,而K+呈相反趋势。鳃离子转运体如钠钾atp酶、nka1α、氯离子通道clc2 mRNA的表达随盐度升高而升高,而水通道蛋白aqp1的表达则下调。血清应激标志物(皮质醇和葡萄糖)随两种应激源呈剂量依赖性增加。血清甲状腺激素下降,在htx15时达到最低水平。抗氧化酶表现出组织特异性反应:在htx15时,肝脏抗氧化酶增加了3- 4倍,而鳃酶则出现中度升高。htx15组肝脏hsp70基因表达上调3倍。这些发现有助于确定环境限制,以支持鱼类健康,生长和可持续性在内陆盐水水产养殖在热和盐胁迫下。
{"title":"Combined physiological effects of high temperature and salinity stress on genetically improved farmed tilapia (Oreochromis niloticus) reared in inland saline water","authors":"Shivangi Bhatt ,&nbsp;N.P. Sahu ,&nbsp;Subodh Gupta ,&nbsp;Sreedharan Krishnan ,&nbsp;Satyakumar Akhila ,&nbsp;T. Paul Nathaniel ,&nbsp;Tincy Varghese","doi":"10.1016/j.cbpb.2025.111165","DOIUrl":"10.1016/j.cbpb.2025.111165","url":null,"abstract":"<div><div>Freshwater scarcity and increasing salinisation of inland water bodies pose significant challenges to agriculture and traditional freshwater aquaculture. Using inland saline water (ISW) for aquaculture offers a promising option to expand farming into salt-affected and non-arable regions. An experimental trial (60 days) was conducted to evaluate the combined effect of temperature and ISW of varying salinities on genetically improved farmed tilapia (GIFT) fingerlings (initial weight: 2.73 ± 0.02 g). Fish were distributed randomly across 6 treatments in triplicate tanks (n=15/tank). The experiment included combinations of two temperatures (Ambient: 28.5 ± 0.39 °C, AT; High: 33.5 ± 0.17 °C, HT) and three salinities (Freshwater, 0-2.25 ppt; ISW, 10 ppt; ISW, 15 ppt). Growth parameters, survival, osmoregulatory parameters and stress markers were analysed. The temperature and salinity interaction was significant, with the poorest growth and survival in the HT X 15 group. Serum osmolality and ions (Na<sup>+</sup>, Ca<sup>2+</sup> and Cl<sup>-</sup>) increased progressively with salinity, and were further elevated at HT, while K<sup>+</sup> showed the opposite trend. mRNA expression of branchial ion transporters such as sodium potassium ATPase, <em>nka1α,</em> and chloride channel, <em>clc2,</em> showed an increase with salinity, while aquaporin, <em>aqp1,</em> was downregulated. Serum stress markers (cortisol and glucose) increased dose-dependently with both stressors. Serum thyroid hormones declined, reaching minimum levels at HT X 15. Antioxidant enzymes showed tissue-specific responses: liver antioxidant enzymes increased 3- 4 fold at HT X 15, while gill enzymes showed moderate elevation. Hepatic <em>hsp70</em> gene expression was upregulated (3-fold) in the HT X 15 group. These findings help define environmental limits to support fish health, growth, and sustainability in inland saline aquaculture under thermal and salinity stress.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"281 ","pages":"Article 111165"},"PeriodicalIF":1.8,"publicationDate":"2025-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145234327","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Intrastrain variability in memory formation of freshly collected Lymnaea stagnalis: The influence of stressor type on memory. 新采海苔记忆形成的应变内变异性:应激源类型对记忆的影响。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-06 DOI: 10.1016/j.cbpb.2025.111140
Veronica Rivi, Anuradha Batabyal, Grace Pele, Kate Yakubets, Roberto Dominici, Johanna Maria Catharina Blom, Fabio Tascedda, Cristina Benatti, Ken Lukowiak

Understanding how environmental stressors influence memory formation is essential for evaluating the ecological and toxicological impacts of pollution on animal behavior. Using Lymnaea stagnalis snails collected from a pollutant-exposed freshwater creek in Canada, we investigated how distinct stressors affect learning and memory abilities and their underlying molecular mechanisms. In one procedure, pairing an appetitive cue with a predator-mimicking mechanical stressor (shell clip) revealed intra-strain variability in memory formation: only a subset of snails formed aversive memory, evidenced by reduced feeding upon cue re-exposure. This behavioral divergence correlated with increased expression of oxidative stress markers and plasticity-related genes in the central nervous system. In contrast, pairing the same cue with acute heat shock, known to induce a sickness-like state, resulted in long-term memory formation only in snails showing upregulation of cellular stress, immune-related, and neuroplasticity genes. Thus, both the nature of the stressor and individual physiological state shape memory outcomes, with Lymnaea engaging stressor-specific molecular programs to support learning. Importantly, this work positions Lymnaea as a valuable sentinel species in behavioral ecotoxicology. The transcriptional markers identified, such as LymHSP70, LymTLR4, and LymP2X, may serve as sensitive indicators of learning and memory disruption by environmental contaminants. By integrating behavioral and gene expression analyses, this study offers a promising framework for investigating how natural and anthropogenic stressors affect cognition, with broad applications for environmental monitoring, toxicology, and conservation biology.

了解环境压力源如何影响记忆形成对于评估污染对动物行为的生态和毒理学影响至关重要。研究人员利用从加拿大一条受污染的淡水小溪中采集的蜗牛,研究了不同的压力源如何影响学习和记忆能力及其潜在的分子机制。在一个过程中,将一个有食欲的线索与一个模仿捕食者的机械压力源(壳夹)配对,揭示了记忆形成的应变变异性:只有一小部分蜗牛形成了厌恶记忆,这可以通过线索再次暴露后进食减少来证明。这种行为差异与中枢神经系统中氧化应激标志物和可塑性相关基因的表达增加有关。相比之下,将相同的提示与急性热休克(已知会引起类似疾病的状态)结合,只会在蜗牛中导致长期记忆的形成,这些蜗牛表现出细胞应激、免疫相关和神经可塑性基因的上调。因此,压力源的性质和个体生理状态都决定了记忆的结果,而lynnaea参与了压力源特异性的分子程序来支持学习。重要的是,这项工作将lynaea定位为行为生态毒理学中有价值的哨兵物种。所鉴定的转录标记物,如淋巴hsp70、淋巴tlr4和淋巴2x,可能作为环境污染物对学习和记忆破坏的敏感指标。通过整合行为和基因表达分析,本研究为研究自然和人为压力源如何影响认知提供了一个有希望的框架,在环境监测、毒理学和保护生物学方面具有广泛的应用。
{"title":"Intrastrain variability in memory formation of freshly collected Lymnaea stagnalis: The influence of stressor type on memory.","authors":"Veronica Rivi, Anuradha Batabyal, Grace Pele, Kate Yakubets, Roberto Dominici, Johanna Maria Catharina Blom, Fabio Tascedda, Cristina Benatti, Ken Lukowiak","doi":"10.1016/j.cbpb.2025.111140","DOIUrl":"10.1016/j.cbpb.2025.111140","url":null,"abstract":"<p><p>Understanding how environmental stressors influence memory formation is essential for evaluating the ecological and toxicological impacts of pollution on animal behavior. Using Lymnaea stagnalis snails collected from a pollutant-exposed freshwater creek in Canada, we investigated how distinct stressors affect learning and memory abilities and their underlying molecular mechanisms. In one procedure, pairing an appetitive cue with a predator-mimicking mechanical stressor (shell clip) revealed intra-strain variability in memory formation: only a subset of snails formed aversive memory, evidenced by reduced feeding upon cue re-exposure. This behavioral divergence correlated with increased expression of oxidative stress markers and plasticity-related genes in the central nervous system. In contrast, pairing the same cue with acute heat shock, known to induce a sickness-like state, resulted in long-term memory formation only in snails showing upregulation of cellular stress, immune-related, and neuroplasticity genes. Thus, both the nature of the stressor and individual physiological state shape memory outcomes, with Lymnaea engaging stressor-specific molecular programs to support learning. Importantly, this work positions Lymnaea as a valuable sentinel species in behavioral ecotoxicology. The transcriptional markers identified, such as LymHSP70, LymTLR4, and LymP2X, may serve as sensitive indicators of learning and memory disruption by environmental contaminants. By integrating behavioral and gene expression analyses, this study offers a promising framework for investigating how natural and anthropogenic stressors affect cognition, with broad applications for environmental monitoring, toxicology, and conservation biology.</p>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":" ","pages":"111140"},"PeriodicalIF":1.8,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144785988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of mint (Mentha piperita L.) leaf extract on growth performance, immune and antioxidant responses in green Tiger shrimp (Penaeus semisulcatus). 薄荷叶提取物对半角对虾生长性能、免疫和抗氧化反应的影响
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-05 DOI: 10.1016/j.cbpb.2025.111139
Ghanbar Sirpoor, Ahmad Noori, Seyed Hossein Hoseinifar, Marina Paolucci

This study examined the effects of mint (Mentha piperita L.) leaf extract (MLE) on the growth, immune responses, antioxidant activity, and hemolymph biochemical parameters in green tiger shrimp (Penaeus semisulcatus) under standard water chemistry and ammonia stress conditions. Four dietary treatments were established: a control and three MLE concentrations (0.5, 1, and 2 g/kg diet). A total of 240 shrimp (initial weight 9.22 ± 0.97 g) were distributed into 12 tanks and fed for eight weeks before ammonia challenge. The results indicated that MLE supplementation did not significantly affect growth performance. Phenoloxidase (PO) activity decreased at the MLE2 level, while lysozyme (Lys) activity increased in both the MLE1 and MLE2 groups compared to control. Superoxide dismutase (SOD) activity was significantly elevated in the MLE2 group, whereas total antioxidant capacity (TAOC), glutathione peroxidase (GPX) and catalase (CAT) activities remained unchanged. The activities of acid phosphatase (ACP), alanine aminotransferase (ALT), alkaline phosphatase (ALP) and aspartate aminotransferase (AST) all decreased in at least one MLE exposure group. Lactate dehydrogenase (LDH) activity increased in all MLE groups. After ammonia stress, antioxidant parameters increased in all MLE groups, except for CAT. Activities of ALT and AST were significantly increased in all MLE-supplemented groups. However, LDH and ALP activities were significantly elevated only in MLE1 and MLE2 groups, while ACP activity showed a significant increase solely in MLE1 group compared to control. These results suggest MLE acts primarily as an antioxidant stimulant in P. semisulcatus.

在标准水化学和氨胁迫条件下,研究了薄荷叶提取物(MLE)对半对虾(Penaeus semiulcatus)生长、免疫反应、抗氧化活性和血淋巴生化指标的影响。建立了4种饲粮处理:对照和3种MLE浓度(0.5、1和2 g/kg饲粮)。选取240尾尾对虾(初始体重为9.22 ± 0.97 g),分为12个水族箱,投喂8周。结果表明,添加MLE对生长性能没有显著影响。与对照组相比,MLE1和MLE2组的酚氧化酶(PO)活性降低,而溶菌酶(Lys)活性升高。MLE2组超氧化物歧化酶(SOD)活性显著升高,而总抗氧化能力(TAOC)、谷胱甘肽过氧化物酶(GPX)和过氧化氢酶(CAT)活性保持不变。至少一个MLE暴露组的酸性磷酸酶(ACP)、丙氨酸转氨酶(ALT)、碱性磷酸酶(ALP)和天冬氨酸转氨酶(AST)活性均降低。所有MLE组乳酸脱氢酶(LDH)活性均升高。氨胁迫后,除CAT外,各MLE组抗氧化指标均升高。各mle添加组的ALT和AST活性均显著升高。然而,LDH和ALP活性仅在MLE1和MLE2组显著升高,而ACP活性仅在MLE1组较对照组显著升高。这些结果表明,MLE主要是作为一种抗氧化刺激剂在半仙人掌中起作用。
{"title":"Effects of mint (Mentha piperita L.) leaf extract on growth performance, immune and antioxidant responses in green Tiger shrimp (Penaeus semisulcatus).","authors":"Ghanbar Sirpoor, Ahmad Noori, Seyed Hossein Hoseinifar, Marina Paolucci","doi":"10.1016/j.cbpb.2025.111139","DOIUrl":"10.1016/j.cbpb.2025.111139","url":null,"abstract":"<p><p>This study examined the effects of mint (Mentha piperita L.) leaf extract (MLE) on the growth, immune responses, antioxidant activity, and hemolymph biochemical parameters in green tiger shrimp (Penaeus semisulcatus) under standard water chemistry and ammonia stress conditions. Four dietary treatments were established: a control and three MLE concentrations (0.5, 1, and 2 g/kg diet). A total of 240 shrimp (initial weight 9.22 ± 0.97 g) were distributed into 12 tanks and fed for eight weeks before ammonia challenge. The results indicated that MLE supplementation did not significantly affect growth performance. Phenoloxidase (PO) activity decreased at the MLE2 level, while lysozyme (Lys) activity increased in both the MLE1 and MLE2 groups compared to control. Superoxide dismutase (SOD) activity was significantly elevated in the MLE2 group, whereas total antioxidant capacity (TAOC), glutathione peroxidase (GPX) and catalase (CAT) activities remained unchanged. The activities of acid phosphatase (ACP), alanine aminotransferase (ALT), alkaline phosphatase (ALP) and aspartate aminotransferase (AST) all decreased in at least one MLE exposure group. Lactate dehydrogenase (LDH) activity increased in all MLE groups. After ammonia stress, antioxidant parameters increased in all MLE groups, except for CAT. Activities of ALT and AST were significantly increased in all MLE-supplemented groups. However, LDH and ALP activities were significantly elevated only in MLE1 and MLE2 groups, while ACP activity showed a significant increase solely in MLE1 group compared to control. These results suggest MLE acts primarily as an antioxidant stimulant in P. semisulcatus.</p>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":" ","pages":"111139"},"PeriodicalIF":1.8,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144785987","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Uncovering the diversity of invertebrate nuclear receptors ligands. 揭示无脊椎动物核受体配体的多样性。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-07 DOI: 10.1016/j.cbpb.2025.111142
Gabriela Alvite, Adriana Esteves

The identification of the first nuclear receptors (NRs) several decades ago opened up new avenues for the study of a wide range of physiological processes. Although vertebrate receptors were first to be identified, studies in invertebrates were integral to establishing their transcriptional roles. The determination of 3D structures as well as advances in transcriptomic and proteomic techniques, have also been important in enhancing understanding of NR functions. Structural models and docking studies are the first step towards the discovery of invertebrate NR ligands as well as to understanding the binding properties of these NRs. The objective of this work is to review the NR ligands of invertebrates, specifically retinoids, steroids, fatty acids and phospholipids, bile acids and vitamin D, tyrosine derivatives and porphyrins. Non-typical NR ligands such as metals and gases are also described. We also address structural and evolutionary aspects. Exploring the ligands of invertebrate nuclear receptors, whether endogenous or exogenous, is a strategy that enables us to understand the role these receptors play in the biology of these organisms, as well as to uncover metabolic pathways that are not yet fully understood.

几十年前,第一批核受体的发现为广泛的生理过程的研究开辟了新的途径。虽然脊椎动物受体首先被确定,但对无脊椎动物的研究对于确定它们的转录作用是不可或缺的。三维结构的确定以及转录组学和蛋白质组学技术的进步,对于增强对NR功能的理解也很重要。结构模型和对接研究是发现无脊椎动物NR配体以及了解这些NR结合特性的第一步。本文综述了无脊椎动物NR配体的研究进展,特别是类维生素a、类固醇、脂肪酸和磷脂、胆汁酸和维生素D、酪氨酸衍生物和卟啉。非典型的NR配体,如金属和气体也进行了描述。我们还讨论了结构和进化方面的问题。探索无脊椎动物核受体的配体,无论是内源性的还是外源性的,都是一种策略,使我们能够了解这些受体在这些生物体的生物学中所起的作用,以及揭示尚未完全了解的代谢途径。
{"title":"Uncovering the diversity of invertebrate nuclear receptors ligands.","authors":"Gabriela Alvite, Adriana Esteves","doi":"10.1016/j.cbpb.2025.111142","DOIUrl":"10.1016/j.cbpb.2025.111142","url":null,"abstract":"<p><p>The identification of the first nuclear receptors (NRs) several decades ago opened up new avenues for the study of a wide range of physiological processes. Although vertebrate receptors were first to be identified, studies in invertebrates were integral to establishing their transcriptional roles. The determination of 3D structures as well as advances in transcriptomic and proteomic techniques, have also been important in enhancing understanding of NR functions. Structural models and docking studies are the first step towards the discovery of invertebrate NR ligands as well as to understanding the binding properties of these NRs. The objective of this work is to review the NR ligands of invertebrates, specifically retinoids, steroids, fatty acids and phospholipids, bile acids and vitamin D, tyrosine derivatives and porphyrins. Non-typical NR ligands such as metals and gases are also described. We also address structural and evolutionary aspects. Exploring the ligands of invertebrate nuclear receptors, whether endogenous or exogenous, is a strategy that enables us to understand the role these receptors play in the biology of these organisms, as well as to uncover metabolic pathways that are not yet fully understood.</p>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":" ","pages":"111142"},"PeriodicalIF":1.8,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144812697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptomic analysis of the comprehensive immune responses induced by recombinant interferon γ and characterization of antiviral Mx2 protein in black rockfish Sebastes schlegelii 重组干扰素γ诱导黑岩鱼综合免疫应答的转录组学分析及抗病毒Mx2蛋白的表达。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-29 DOI: 10.1016/j.cbpb.2025.111166
Hao Jing , Kai Yang , Yue Wang , Zi-yue Chen , Nuo Sun , Zhi-shu Zhu , Min Zhang , Guang-hua Wang
Interferon-gamma (IFNγ) is a key immune regulator in teleost fish, yet its mechanisms of action remain poorly understood. In this study, we investigated the immunomodulatory role of recombinant Sebastes schlegelii IFNγ (rSsIFNγ) in intestinal cells (SSICs) and characterized the antiviral effector myxovirus resistance protein 2 (SsMx2). Transcriptome sequencing revealed 7231 differentially expressed genes, with principal component analysis (PCA) showing clear separation between experimental and control groups. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated significant enrichment of immune-related pathways, particularly antigen processing and presentation, Janus kinase–signal transducer and activator of transcription (JAK-STAT), and tumor necrosis factor (TNF) signaling. rSsIFNγ treatment upregulated major histocompatibility complex (MHC) molecules, key cytokines, and multiple antimicrobial effectors. We cloned the full-length ssmx2 cDNA, which encodes a 644-amino acid protein containing conserved GTPase and effector domains. Phylogenetic analysis confirmed high sequence conservation with other teleost Mx proteins. ssmx2 showed tissue-specific expression, was strongly induced by pathogen challenge and rSsIFNγ stimulation, and localized mainly to the cytoplasm. Collectively, these results demonstrate that rSsIFNγ reprograms intestinal immune responses through activation of multiple signaling pathways and identify SsMx2 as an important interferon-inducible antiviral effector in rockfish.
干扰素γ (IFNγ)是硬骨鱼的一种关键免疫调节因子,但其作用机制尚不清楚。在这项研究中,我们研究了重组schlegelii sebases IFNγ (rSsIFNγ)在肠细胞(sics)中的免疫调节作用,并鉴定了其抗病毒效应物黏液病毒抗性蛋白2(黏液病毒抗性蛋白2)。转录组测序显示7231个差异表达基因,主成分分析(PCA)显示实验组与对照组明显分离。京都基因与基因组百科全书(KEGG)分析显示,免疫相关通路显著富集,特别是抗原加工和递呈、Janus激酶信号转导和转录激活因子(JAK-STAT)和肿瘤坏死因子(TNF)信号。rSsIFNγ处理上调主要组织相容性复合体(MHC)分子、关键细胞因子和多种抗菌效应物。我们克隆了ssmx2全长cDNA,该cDNA编码一个含有保守GTPase和效应域的644个氨基酸的蛋白。系统发育分析证实与其他硬骨鱼Mx蛋白具有高度的序列保守性。ssmx2具有组织特异性表达,受到病原菌攻击和rSsIFNγ刺激的强烈诱导,主要定位于细胞质。总之,这些结果表明rSsIFNγ通过激活多种信号通路重编程肠道免疫反应,并确定SsMx2是岩鱼中重要的干扰素诱导的抗病毒效应物。
{"title":"Transcriptomic analysis of the comprehensive immune responses induced by recombinant interferon γ and characterization of antiviral Mx2 protein in black rockfish Sebastes schlegelii","authors":"Hao Jing ,&nbsp;Kai Yang ,&nbsp;Yue Wang ,&nbsp;Zi-yue Chen ,&nbsp;Nuo Sun ,&nbsp;Zhi-shu Zhu ,&nbsp;Min Zhang ,&nbsp;Guang-hua Wang","doi":"10.1016/j.cbpb.2025.111166","DOIUrl":"10.1016/j.cbpb.2025.111166","url":null,"abstract":"<div><div>Interferon-gamma (IFNγ) is a key immune regulator in teleost fish, yet its mechanisms of action remain poorly understood. In this study, we investigated the immunomodulatory role of recombinant <em>Sebastes schlegelii</em> IFNγ (rSsIFNγ) in intestinal cells (SSICs) and characterized the antiviral effector myxovirus resistance protein 2 (SsMx2). Transcriptome sequencing revealed 7231 differentially expressed genes, with principal component analysis (PCA) showing clear separation between experimental and control groups. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated significant enrichment of immune-related pathways, particularly antigen processing and presentation, Janus kinase–signal transducer and activator of transcription (JAK-STAT), and tumor necrosis factor (TNF) signaling. rSsIFNγ treatment upregulated major histocompatibility complex (MHC) molecules, key cytokines, and multiple antimicrobial effectors. We cloned the full-length <em>ssmx2</em> cDNA, which encodes a 644-amino acid protein containing conserved GTPase and effector domains. Phylogenetic analysis confirmed high sequence conservation with other teleost Mx proteins. <em>ssmx2</em> showed tissue-specific expression, was strongly induced by pathogen challenge and rSsIFNγ stimulation, and localized mainly to the cytoplasm. Collectively, these results demonstrate that rSsIFNγ reprograms intestinal immune responses through activation of multiple signaling pathways and identify SsMx2 as an important interferon-inducible antiviral effector in rockfish.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"281 ","pages":"Article 111166"},"PeriodicalIF":1.8,"publicationDate":"2025-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145208446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1