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Region-specific metabolomics reveals the mechanisms underlying melanin synthesis in Pacific oyster (Crassostrea gigas) mantle. 区域特异性代谢组学揭示了太平洋牡蛎(长牡蛎)地幔中黑色素合成的机制。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-02-06 DOI: 10.1016/j.cbpb.2026.111205
Xingda Jia, Xiaochen Zhang, Haoyu Zhang, Yijing Han, Xiaotong Wang

Shell color is a vital economic trait of the Pacific oyster (Crassostrea gigas). However, the metabolic regulation underlying melanin deposition remains elusive. Analyses of black shell and white shell oyster strains often reflect systemic physiological differences (e.g., growth variations) that can obscure localized pigmentary signals. To reduce these systemic confounders, this study characterized metabolic profiles of excised black and white mantle tissue regions within the same individuals to identify direct pigment-related metabolic signatures. Untargeted liquid chromatography-mass spectrometry metabolomics was used to identify 527 differential metabolites. This assessment showed that in black mantle regions tyrosine metabolism was altered, and while dopamine concentrations remained stable, catecholamine-related metabolites were downregulated. Concurrently, elevated glutathione concentrations were identified in black mantle regions, which may create a reductive microenvironment that helps maintain redox homeostasis during melanogenesis. Increased spermidine concentrations were also identified in black mantle regions, which may indirectly modulate melanogenesis. Furthermore, in black mantle regions citrate cycle intermediates and lipids were downregulated suggesting a metabolic shift to support high-intensity biosynthesis. These findings provide a novel biochemical perspective on mollusk coloration, highlighting that melanin pigmentation is a highly regulated metabolic process that balances substrate competition, redox regulation, and energy allocation.

贝壳颜色是太平洋牡蛎(长牡蛎)的重要经济特征。然而,黑色素沉积背后的代谢调节仍然是难以捉摸的。对黑壳和白壳牡蛎品系的分析通常反映了系统的生理差异(例如,生长变化),这可能会模糊局部的色素信号。为了减少这些系统性混杂因素,本研究对同一个体内切除的黑色和白色套膜组织区域的代谢特征进行了表征,以确定与色素相关的直接代谢特征。采用非靶向液相色谱-质谱代谢组学方法鉴定了527种差异代谢物。该评估表明,在黑套区酪氨酸代谢发生改变,而多巴胺浓度保持稳定,儿茶酚胺相关代谢物下调。同时,在黑色地幔区域发现谷胱甘肽浓度升高,这可能创造了一个还原性微环境,有助于在黑色素形成过程中维持氧化还原稳态。在黑色地幔区域也发现了亚精胺浓度的增加,这可能间接调节黑色素形成。此外,在黑地幔区域,柠檬酸循环中间体和脂质被下调,这表明代谢转变支持高强度的生物合成。这些发现为软体动物着色提供了一个新的生化视角,强调黑色素着色是一个高度调控的代谢过程,它平衡了底物竞争、氧化还原调节和能量分配。
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引用次数: 0
Effects of phosphatidylserine supplementation on growth performance, lipid metabolism, antioxidant capacity, and inflammatory response of juvenile large yellow croaker (Larimichthys crocea) fed with high soybean oil diets. 饲粮中添加磷脂酰丝氨酸对大黄鱼幼鱼生长性能、脂质代谢、抗氧化能力和炎症反应的影响
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-02-02 DOI: 10.1016/j.cbpb.2026.111193
Minglang Chen, Yongtao Liu, Xianyong Bu, Zhiwei Chen, Jinze Zhang, Md Golam Sajed Riar, Yuhang Tang, Jianlong Du, Chuanwei Yao, Changxu Sui, Kangsen Mai, Qinghui Ai

An 8-week experiment was conducted to evaluate the effects of dietary phosphatidylserine (PS) supplementation on juvenile large yellow croaker (Larimichthys crocea) fed high soybean oil (SO) diets. A fish oil control, an SO control, and four SO-based diets supplemented with 0.002%, 0.006%, 0.018%, or 0.054% PS were formulated. Results showed that weight gain exhibited quadratic responses to increasing PS levels. PS supplementation alleviated hepatic lipid deposition and reduced serum and hepatic lipid concentrations. At the molecular level, PS downregulated hepatic lipogenic gene expression including sterol regulatory element-binding protein 1 (srebp1), fatty acid synthase (fas), stearoyl-CoA desaturase 1 (scd1), and acetyl-CoA carboxylase 1 (acc1). Conversely, it upregulated hepatic lipid catabolism genes: peroxisome proliferator-activated receptor a (ppara), lipoprotein lipase (lpl), carnitine palmitoyltransferase 1 (cpt1), and diacylglycerol O-acyltransferase 1 (dgat1). Additionally, PS restored antioxidant enzyme activities and the expression of superoxide dismutase (sod1, sod3), glutathione peroxidase (gpx), and catalase (cat) in the liver. Furthermore, PS reduced hepatic pro-inflammatory cytokine mRNA levels: tumor necrosis factor α(tnf-α), cyclooxygenase 2 (cox-2), and interleukins (il-6, il-1β). In conclusion, dietary inclusion of 0.006%-0.018% PS effectively enhanced growth and antioxidant capacity, altered lipid handling, and affected transcriptional inflammatory responses.

本试验旨在研究在饲料中添加磷脂酰丝氨酸(PS)对饲喂高豆油饲料的大黄鱼幼鱼的影响。配制鱼油对照组、鱼油对照组和添加0.002%、0.006%、0.018%和0.054% PS的4种以SO为基础的饲粮。结果表明,体重增加对PS水平的增加呈二次响应。补充PS可减轻肝脏脂质沉积,降低血清和肝脏脂质浓度。在分子水平上,PS下调肝脏脂肪生成基因的表达,包括固醇调节元件结合蛋白1 (srebp1)、脂肪酸合成酶(fas)、硬脂酰辅酶a去饱和酶1 (scd1)和乙酰辅酶a羧化酶1 (acc1)。相反,它上调了肝脏脂质分解代谢基因:过氧化物酶体增殖物激活受体a (ppara)、脂蛋白脂肪酶(lpl)、肉碱棕榈酰基转移酶1 (cpt1)和二酰基甘油o -酰基转移酶1 (dgat1)。此外,PS还能恢复肝脏中抗氧化酶活性和超氧化物歧化酶(sod1、sod3)、谷胱甘肽过氧化物酶(gpx)和过氧化氢酶(cat)的表达。此外,PS降低肝脏促炎细胞因子mRNA水平:肿瘤坏死因子α(tnf-α)、环氧化酶2 (cox-2)和白细胞介素(il-6、il-1β)。综上所述,饲粮中添加0.006% ~ 0.018% PS可有效促进生长和抗氧化能力,改变脂质处理,并影响转录炎症反应。
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引用次数: 0
The role of ovarian aromatase (cyp19a1a) in zebrafish cardiac formation and function 卵巢芳香化酶(cyp19a1a)在斑马鱼心脏形成和功能中的作用。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-21 DOI: 10.1016/j.cbpb.2026.111204
Zulvikar Syambani Ulhaq , Mitsuyo Kishida
Aromatase, the key enzyme for estrogen biosynthesis, is present in zebrafish as two isoforms: the ovarian form (cyp19a1a; Aromatase A (AroA)) and the brain form (cyp19a1b; Aromatase B (AroB)). Here, we investigated the role of AroA in early cardiac development. RT-PCR and immunostaining demonstrated that only AroA, and not AroB, is expressed in the zebrafish heart, specifically in atrial and ventricular cardiomyocytes and smooth muscle cells of the bulbus arteriosus. Dot blot analysis and whole-mount immunostaining confirmed the reduction of AroA expression in AroA morphants at 2 days post-fertilization (dpf). Phenotypic analysis revealed impaired yolk sac extension and reduced heart size, accompanied by significant downregulation of yolk-associated mRNA expression (vitellogenin 1 (vtg1), ribonuclease-like 2 (rnasel2)) and cardiac development genes (myosin light chain 7 (myl7), natriuretic peptide A (nppa), leucine-rich repeat-containing protein 10 (lrrc10)). Moreover, AroA knockdown suppressed dopamine β-hydroxylase (DBH) protein expression in catecholaminergic cells and significantly reduced heart rate. Morphological assessment using cardiac myosin light chain 2 (cmlc2):GFP and histological staining showed normal cardiac looping but smaller ventricular chambers. Additionally, morphants exhibited reduced end-systolic volume (ESV) and end-diastolic volume (EDV), accompanied by decreases in stroke volume (SV), cardiac output (CO), and ventricular fractional shortening (FS%). Altogether, these findings demonstrate that AroA is an essential regulator of zebrafish heart morphogenesis and function.
芳香化酶是雌激素生物合成的关键酶,在斑马鱼中存在两种亚型:卵巢型(cyp19a1a;芳香化酶A (AroA))和脑型(cyp19a1b;芳香化酶B (AroB))。在这里,我们研究了AroA在早期心脏发育中的作用。RT-PCR和免疫染色表明,斑马鱼心脏中只有AroA表达,而AroB不表达,特别是在房、室心肌细胞和动脉球平滑肌细胞中。Dot blot分析和全挂免疫染色证实,AroA变形体在受精后2 天(dpf)表达降低。表型分析显示卵黄囊延伸受损,心脏大小减小,并伴有蛋黄相关mRNA(卵黄原蛋白1 (vtg1)、核糖核酸酶样2 (rnasel2))和心脏发育基因(肌球蛋白轻链7 (myl7)、利钠肽A (nppa)、富含亮氨酸重复序列的蛋白10 (lrrc10))表达显著下调。此外,AroA敲低可抑制儿茶酚胺能细胞中多巴胺β-羟化酶(DBH)蛋白的表达,显著降低心率。心肌肌球蛋白轻链2 (cmlc2)形态学评估:GFP和组织学染色显示心脏环正常,但心室较小。此外,变形体表现出收缩末期体积(ESV)和舒张末期体积(EDV)的减少,并伴有卒中体积(SV)、心输出量(CO)和心室缩短分数(FS%)的减少。总之,这些发现表明AroA是斑马鱼心脏形态发生和功能的重要调节因子。
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引用次数: 0
Understanding molecular and biochemical mechanisms are key to advances in applied dietary physiology. 了解分子和生化机制是推进应用饮食生理学的关键。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-13 DOI: 10.1016/j.cbpb.2026.111203
Chris N Glover, Alyssa M Weinrauch
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引用次数: 0
Establishment of an immortalized renal epithelial cell line derived from grass carp and its susceptibility to grass carp Reovirus genotype II 草鱼肾上皮永生化细胞系的建立及其对草鱼呼肠孤病毒基因型的易感性
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-06 DOI: 10.1016/j.cbpb.2026.111201
Xiudong Guo , Shucheng Zheng , Jiyuan Yin , Yingying Li , Yan Ren , Xubing Mo , Weiwei Zeng , Liping Zhang , Xidong Mu , Qing Wang , Yingying Wang
Hemorrhagic disease in grass carp (Ctenopharyngodon idella) caused by grass carp reovirus genotype II (GCRV-II) threatens sustainable aquaculture. To facilitate virus isolation, characterization, and studies on the pathogenic mechanisms of GCRV-II, we established a new cell line, Ctenopharyngodon idella trunk kidney (CITK). This cell line was developed using a trypsin digestion method and exhibited optimal proliferation at 27 °C in Medium 199/Leibovitz's L-15 medium supplemented with 10 % fetal bovine serum (FBS). Karyotype analysis revealed chromosome numbers of 2n = 48 and 2n = 60 at passages 10 (P10) and 60 (P60), respectively, indicating that the cell line underwent spontaneous immortalization during serial passaging. Species authentication (the mitochondrial cytochrome oxidase subunit I gene (cox1)), along with tissue-specific marker analysis, confirmed that CITK originated from the kidney tissue of grass carp. Mycoplasma testing confirmed the absence of contamination during cultivation. Functional assays demonstrated that CITK cells support efficient transfection with the green fluorescent protein gene plasmid. Notably, CITK exhibited significantly higher susceptibility to GCRV-II HN2407 compared to four other grass carp cell lines, with viral load reaching 6.26 × 105 copies/μL as determined by qRT-PCR. Kinetic analysis of infection revealed that, at 12, 24, and 48 h post-infection, GCRV-II induced time-dependent expression of key genes involved in innate immunity, pattern recognition receptors, signaling transducers, and adaptive immunity. The establishment of the immortalized CITK cell line provides a valuable platform for elucidating the pathogenic mechanisms of GCRV-II, developing antiviral strategies, and advancing studies on host-virus interactions in grass carp.
由草鱼呼肠孤病毒基因型(GCRV-II)引起的草鱼出血性疾病威胁着草鱼养殖的可持续发展。为了便于GCRV-II病毒的分离、鉴定和致病机制的研究,我们建立了一种新的细胞系——Ctenopharyngodon idella主干肾(CITK)。该细胞系采用胰蛋白酶消化法培养,在培养基199/Leibovitz's L-15中添加10%胎牛血清(FBS), 27°C条件下增殖最佳。核型分析显示,在第10代(P10)和第60代(P60)染色体数目分别为2n = 48和2n = 60,表明该细胞系在连续传代过程中发生了自发永生化。物种鉴定(线粒体细胞色素氧化酶亚基I基因(cox1))和组织特异性标记分析证实,CITK起源于草鱼的肾脏组织。支原体检测证实在培养过程中没有污染。功能分析表明,CITK细胞支持高效转染绿色荧光蛋白基因质粒。值得注意的是,与其他4种草鱼细胞系相比,CITK对GCRV-II HN2407的敏感性显著提高,qRT-PCR检测的病毒载量达到6.26 × 105拷贝/μL。感染动力学分析显示,在感染后12、24和48小时,GCRV-II诱导了涉及先天免疫、模式识别受体、信号转导和适应性免疫的关键基因的时间依赖性表达。CITK永生化细胞系的建立为阐明GCRV-II的致病机制、制定抗病毒策略以及推进草鱼宿主-病毒相互作用的研究提供了有价值的平台。
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引用次数: 0
Commentary: Taurine as a central osmoprotectant in marine molluscs – Roles in osmoregulation, oxidative balance and immune homeostasis 评论:牛磺酸作为海洋软体动物的中心渗透保护剂-在渗透调节,氧化平衡和免疫稳态中的作用。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-05 DOI: 10.1016/j.cbpb.2026.111200
Nguyen Van Thao , Andrea C. Alfaro , Nguyen Thao Suong , Le Viet Dung , Phan Nguyen Trang
Taurine, a β-amino sulfonic acid, is among the most abundant free amino acids in marine molluscs and functions as a dominant osmoprotectant critical for maintaining cellular homeostasis under fluctuating salinity. Beyond its osmoregulatory role, taurine exerts multifunctional cytoprotective, antioxidant, and immunomodulatory effects, positioning it as a key molecule in molluscan stress physiology. This commentary synthesises our current understanding of taurine dynamics in marine molluscs, highlighting recent advances in taurine transport, metabolism, and stress-responsive regulation. Particular attention is given to the taurine transporter (TauT) and its function in coordinating uptake and efflux during osmotic challenges, as well as the emerging evidence linking taurine to antioxidant defence and innate immunity. By integrating findings from molecular, biochemical, and cellular studies, this commentary underscores taurine as a multifunctional molecule fundamental to molluscan stress tolerance and identifies promising directions for future research, including omics-driven analyses of taurine regulatory pathways and their ecological relevance in rapidly changing marine ecosystems.
牛磺酸是一种β-氨基磺酸,是海洋软体动物中最丰富的游离氨基酸之一,是一种重要的渗透保护剂,对维持盐度波动下的细胞稳态至关重要。除了渗透调节作用外,牛磺酸还具有多功能的细胞保护、抗氧化和免疫调节作用,是软体动物应激生理的关键分子。这篇评论综合了我们目前对海洋软体动物中牛磺酸动力学的理解,强调了牛磺酸运输、代谢和应激反应调节的最新进展。特别关注牛磺酸转运蛋白(TauT)及其在渗透挑战中协调摄取和排出的功能,以及牛磺酸与抗氧化防御和先天免疫有关的新证据。通过整合分子、生物化学和细胞研究的发现,本文强调牛磺酸是软体动物耐受性的多功能分子,并确定了未来研究的有希望的方向,包括对牛磺酸调控途径的组学驱动分析及其在快速变化的海洋生态系统中的生态相关性。
{"title":"Commentary: Taurine as a central osmoprotectant in marine molluscs – Roles in osmoregulation, oxidative balance and immune homeostasis","authors":"Nguyen Van Thao ,&nbsp;Andrea C. Alfaro ,&nbsp;Nguyen Thao Suong ,&nbsp;Le Viet Dung ,&nbsp;Phan Nguyen Trang","doi":"10.1016/j.cbpb.2026.111200","DOIUrl":"10.1016/j.cbpb.2026.111200","url":null,"abstract":"<div><div>Taurine, a β-amino sulfonic acid, is among the most abundant free amino acids in marine molluscs and functions as a dominant osmoprotectant critical for maintaining cellular homeostasis under fluctuating salinity. Beyond its osmoregulatory role, taurine exerts multifunctional cytoprotective, antioxidant, and immunomodulatory effects, positioning it as a key molecule in molluscan stress physiology. This commentary synthesises our current understanding of taurine dynamics in marine molluscs, highlighting recent advances in taurine transport, metabolism, and stress-responsive regulation. Particular attention is given to the taurine transporter (TauT) and its function in coordinating uptake and efflux during osmotic challenges, as well as the emerging evidence linking taurine to antioxidant defence and innate immunity. By integrating findings from molecular, biochemical, and cellular studies, this commentary underscores taurine as a multifunctional molecule fundamental to molluscan stress tolerance and identifies promising directions for future research, including omics-driven analyses of taurine regulatory pathways and their ecological relevance in rapidly changing marine ecosystems.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"283 ","pages":"Article 111200"},"PeriodicalIF":1.8,"publicationDate":"2026-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145919100","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Glucose-dependent insulinotropic polypeptide (GIP) acts as an appetite regulator rather than as a hypoglycemic incretin in grass carp 在草鱼中,葡萄糖依赖性胰岛素多肽(GIP)是一种食欲调节剂,而不是一种降血糖的肠促胰岛素
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-31 DOI: 10.1016/j.cbpb.2025.111192
Danhong Cheng , Manjie Sun , Jinqian Huang , Shan Luo , Haotian Chen , Shengzhen Jin , Yanpeng Zhang , Xiaochen Yuan
In mammals, glucose-dependent insulinotropic polypeptide (GIP) exerts a potent hypoglycemic effect, whereas its role in fish remains controversial. In this study, synthetic grass carp GIP was administered via intraperitoneal injection, and its effects were evaluated over 24 h. GIP significantly elevated blood glucose levels at 0.5 h post-injection compared to the saline control. This hyperglycemia was accompanied by increased hepatic expression of the gluconeogenic genes glucose-6-phosphatase (g6pc) and phosphoenolpyruvate carboxykinase 1 (pck1) and decreased expression of the glycolytic gene pyruvate kinase (pk). Postprandial expression of the gip gene was also significantly upregulated in the foregut at 6 h. Furthermore, GIP administration modulated central appetite regulators within 1 h, increasing expression of the anorexigenic cocaine- and amphetamine-regulated transcript (cart) and decreasing expression of the orexigenic neuropeptide Y (npy) and agouti related neuropeptide (agrp). Collectively, these results indicate that in grass carp, GIP functions primarily as an appetite regulator rather than as a hypoglycemic incretin, highlighting its potential as a target for studies on appetite control in fish.
在哺乳动物中,葡萄糖依赖型胰岛素多肽(GIP)具有强大的降糖作用,而其在鱼类中的作用仍存在争议。在本研究中,合成草鱼GIP通过腹腔注射,并在24 h内评估其效果。与生理盐水对照组相比,GIP在注射后0.5 h显著提高了血糖水平。这种高血糖伴随着糖异生基因葡萄糖-6-磷酸酶(g6pc)和磷酸烯醇丙酮酸羧激酶1 (pck1)的肝脏表达增加,糖酵解基因丙酮酸激酶(pk)的表达减少。餐后6小时前肠中gip基因的表达也显著上调。此外,gip在1小时内调节了中枢食欲调节因子,增加了厌食可卡因和安非他明调控的转录物(cart)的表达,降低了厌食神经肽Y (npy)和豚鼠相关神经肽(agrp)的表达。总的来说,这些结果表明,在草鱼中,GIP主要是作为食欲调节剂而不是作为降糖肠促胰岛素,突出了其作为鱼类食欲控制研究靶点的潜力。
{"title":"Glucose-dependent insulinotropic polypeptide (GIP) acts as an appetite regulator rather than as a hypoglycemic incretin in grass carp","authors":"Danhong Cheng ,&nbsp;Manjie Sun ,&nbsp;Jinqian Huang ,&nbsp;Shan Luo ,&nbsp;Haotian Chen ,&nbsp;Shengzhen Jin ,&nbsp;Yanpeng Zhang ,&nbsp;Xiaochen Yuan","doi":"10.1016/j.cbpb.2025.111192","DOIUrl":"10.1016/j.cbpb.2025.111192","url":null,"abstract":"<div><div>In mammals, glucose-dependent insulinotropic polypeptide (GIP) exerts a potent hypoglycemic effect, whereas its role in fish remains controversial. In this study, synthetic grass carp GIP was administered via intraperitoneal injection, and its effects were evaluated over 24 h. GIP significantly elevated blood glucose levels at 0.5 h post-injection compared to the saline control. This hyperglycemia was accompanied by increased hepatic expression of the gluconeogenic genes glucose-6-phosphatase (<em>g6pc</em>) and phosphoenolpyruvate carboxykinase 1 (<em>pck1</em>) and decreased expression of the glycolytic gene pyruvate kinase (<em>pk</em>). Postprandial expression of the <em>gip</em> gene was also significantly upregulated in the foregut at 6 h. Furthermore, GIP administration modulated central appetite regulators within 1 h, increasing expression of the anorexigenic cocaine- and amphetamine-regulated transcript (<em>cart</em>) and decreasing expression of the orexigenic neuropeptide Y (<em>npy)</em> and agouti related neuropeptide <em>(agrp</em>). Collectively, these results indicate that in grass carp, GIP functions primarily as an appetite regulator rather than as a hypoglycemic incretin, highlighting its potential as a target for studies on appetite control in fish.</div></div>","PeriodicalId":55236,"journal":{"name":"Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology","volume":"283 ","pages":"Article 111192"},"PeriodicalIF":1.8,"publicationDate":"2025-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145891158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Elasmobranch Aqp10 paralogs differ in glycerol permeability Elasmobranch Aqp10类似物在甘油渗透性方面存在差异。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-20 DOI: 10.1016/j.cbpb.2025.111191
Ayumi Nagashima, Akira Kato
Aquaglyceroporins are water channels that are permeable to uncharged, low-molecular-weight compounds such as glycerol. Aquaglyceroporins are conserved across many species. However, our knowledge of aquaglyceroporins in cartilaginous fish is limited, particularly regarding the functional differences in cartilaginous fish-specific paralogs. We analyzed the evolutionary relationship between Aqp10 paralogs in two elasmobranchs and one holocephalan and compared their solute permeabilities. Molecular phylogenetic and synteny analyses confirmed that the elasmobranch Aqp10 paralogs, Aqp10C1 and Aqp10C2, arose from a cartilaginous-fish-specific tandem gene duplication. The holocephalan lacks Aqp10C1 and possesses two paralogs (Aqp10C2a and Aqp10C2b) probably derived from Aqp10C2. Swelling assays showed that Aqp10C2 maintained glycerol permeability when expressed in Xenopus oocytes. However, the glycerol permeability of Aqp10C1s were lower than those of other paralogs and the activity was similar to those of water-specific aquaporins. Aqp10 function is highly differentiated in elasmobranchs, and Aqp10C1 may have lost its glycerol permeability during a unique evolution through tandem gene duplication and sub/neofunctionalization.
水甘油孔蛋白是一种水通道,可以渗透到不带电的低分子量化合物,如甘油。水甘油孔蛋白在许多物种中都是保守的。然而,我们对软骨鱼中的水甘油孔蛋白的了解是有限的,特别是关于软骨鱼特异性相似物的功能差异。我们分析了两个弹性支和一个全头纲动物Aqp10的进化关系,并比较了它们的溶质渗透率。分子系统发育和合成分析证实,板鳃Aqp10亲缘关系Aqp10C1和Aqp10C2是由软骨鱼特异性串联基因重复产生的。全头虫缺乏Aqp10C1,有两个可能来源于Aqp10C2的类似基因Aqp10C2a和Aqp10C2b。肿胀实验表明Aqp10C2在爪蟾卵母细胞中表达时保持甘油渗透性。然而,Aqp10C1s的甘油渗透性低于其他同类,其活性与水特异性水通道蛋白相似。Aqp10功能在弹性分支中高度分化,Aqp10C1可能在通过串联基因复制和亚/新功能化的独特进化过程中失去了其甘油渗透性。
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引用次数: 0
Diel thermal fluctuations during embryonic development affect molecular and physiological phenotypes in later life stages of Fundulus heteroclitus 胚胎发育过程中的热波动影响异交底藻后期的分子和生理表型。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-18 DOI: 10.1016/j.cbpb.2025.111190
Tessa S. Blanchard , Madison L. Earhart , Leah Campbell , Adam Harman , Ben Staples , Will Bugg , Patricia M. Schulte
Temperature varies in aquatic environments across many temporal scales, but relatively few studies have studied the effects of stable versus variable temperatures in fishes, particularly during early development. The goal of our study was to compare the lasting effects of varying extents of diel thermal fluctuation during embryonic development on whole-animal phenotypes and to examine underlying molecular mechanisms. To address this, we used Fundulus heteroclitus, a species of topminnow that inhabits intertidal saltmarshes along the Atlantic coast of North America that experience daily tidal fluctuations. We developed embryos under four different levels of diel thermal fluctuation (26 ± 0 °C, 26 ± 3 °C, 26 ± 5 °C, 26 ± 7 °C) from fertilization to hatch. Once hatched, larvae were raised at a common constant temperature of 26 °C for up to 6 months to test for lasting effects on phenotype due to developmental plasticity. We found evidence of developmental plasticity at our early sampling timepoints (1 and 3 months), as thermal tolerance (Critical thermal maximum (CTmax) and agitation temperature) and hypoxia tolerance decreased in response to fluctuating temperatures, whereas length was greater. By 6 months, length and metabolic rate did not differ between groups. Changes in physiological phenotypes were accompanied by altered mRNA levels of key regulatory genes such as insulin-like growth factors (igfs), heat-shock proteins (hsps), and hypoxia-inducible factor (hif1α). Together, these data demonstrate exposure to fluctuating temperature during early development has lasting effects for several months at both the physiological and molecular levels, which has implications for predicting the responses of fishes to climate change.
水生环境中的温度在许多时间尺度上都有变化,但相对较少的研究研究了稳定温度对鱼类的影响,特别是在早期发育期间。我们研究的目的是比较胚胎发育过程中不同程度的热波动对全动物表型的持久影响,并研究潜在的分子机制。为了解决这个问题,我们使用了一种生活在北美大西洋沿岸潮间带盐沼的顶米诺鱼,这种鱼每天都会经历潮汐波动。我们开发了胚胎在四种不同水平的一昼夜的温度波动(26 ±  0°C, 26 ±  3°C, 26 ±5  °C, 26 ±7  °C)从受精到舱口。一旦孵化,幼虫在26 °C的普通恒温下饲养长达6 个月,以测试由于发育可塑性对表型的持久影响。我们在早期采样时间点(1和3 个月)发现了发育可塑性的证据,因为热耐受性(临界热最大值(CTmax)和搅拌温度)和缺氧耐受性随着温度的波动而下降,而长度则更大。到6 个月时,两组之间的体长和代谢率没有差异。生理表型的变化伴随着关键调控基因(如igfs、hsps和hif1α) mRNA水平的改变。总之,这些数据表明,在发育早期暴露于波动的温度下,在生理和分子水平上都会产生持续数月的影响,这对预测鱼类对气候变化的反应具有重要意义。
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引用次数: 0
Aerial exposure and seawater immersion induce distinct transcriptomic responses of the marine pulmonate gastropod, Siphonaria japonica (Donovan, 1824), as determined by Iso-seq and RNA-seq analysis 通过Iso-seq和RNA-seq分析发现,空气暴露和海水浸泡可诱导海洋肺腹足动物Siphonaria japonica (Donovan, 1824)的转录组反应。
IF 1.8 3区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-15 DOI: 10.1016/j.cbpb.2025.111189
Peizhen Ma , Shuangli Zhang , Xiangyu Wu , Shaojing Yan , Chenxia Zuo , Zhen Zhang
Siphonariid limpets are a group of intertidal pulmonate snails that have undergone aquatic-terrestrial evolution followed by secondary recolonization of the marine environment. To elucidate the responses of Siphonaria japonica to extended aerial exposure and seawater immersion, we conducted comparative transcriptome analysis of three tissues (foot, gill, and mantle) using both next-generation RNA sequencing (RNA-seq) and full-length isoform sequencing (Iso-seq) methods. For Iso-seq, 448,457 reads representing a total length of 14,622,086 bp were obtained, which were assembled into 8072 unigenes. For RNA-seq, 867,101,624 clean reads were obtained with a total length of 130,390,993,290 bp. The Iso-seq and RNA-seq data were integrated to construct a comprehensive gene annotation across three tissues. Results showed that gill displayed the most extensive response with 252 differentially expressed genes (DEGs), whereas mantle exhibited the least with 121 DEGs. Gene Ontology enrichment analysis showed that the gill, mantle, and foot exhibited distinct gene regulatory profiles. The gill was involved in osmoregulatory and cell adhesion pathways, the mantle was implicated in metabolic processes, whereas in the foot transcripts associated with pathways related to epidermal cell differentiation, as well as serine-type endopeptidase inhibitor activity were prominent. Collectively, these findings suggest that S. japonica mounted a coordinated multi-tissue response, integrating metabolic modulation, osmoregulatory fine-tuning, and structural remodeling to optimize energy allocation under aquatic and terrestrial conditions.
帽贝是一群潮间带肺蜗牛,经历了水陆进化和海洋环境的二次再定殖。为了阐明日本虹吸(Siphonaria japonica)对长时间空气暴露和海水浸泡的反应,我们使用下一代RNA测序(RNA-seq)和全长同种异构体测序(Iso-seq)方法对三种组织(足、鳃和地幔)进行了比较转录组分析。对于Iso-seq,共获得448,457个reads,总长度为14,622,086 bp,组装成8072个unigenes。对于RNA-seq,共获得867,101,624个clean reads,总长度为130,390,993,290 bp。整合了Iso-seq和RNA-seq数据,构建了跨三种组织的全面基因注释。结果表明,鳃的差异表达基因最多,有252个差异表达基因,而地幔的差异表达基因最少,有121个差异表达基因。基因本体富集分析表明,鳃、地幔和足具有不同的基因调控谱。鳃参与渗透调节和细胞粘附途径,套膜参与代谢过程,而足部转录本与表皮细胞分化相关的途径以及丝氨酸型内肽酶抑制剂活性相关。综上所述,这些研究结果表明,在水生和陆地条件下,粳稻进行了协调的多组织响应,整合了代谢调节、渗透调节微调和结构重塑,以优化能量分配。
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引用次数: 0
期刊
Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology
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