Pub Date : 2020-12-01DOI: 10.1080/24699322.2020.1760354
David S P Adair, Keith S Gomes, Zelma H T Kiss, David G Gobbi, Yves P Starreveld
Frame-based stereotaxy is widely used for planning and implanting deep-brain electrodes. In 2013, as part of a clinical study on deep-brain stimulation for treatment-resistant depression, our group identified a need for software to simulate and plan stereotactic procedures. Shortcomings in extant commercial systems encouraged us to develop Tactics. Tactics is purpose-designed for frame-based stereotactic placement of electrodes. The workflow is far simpler than commercial systems. By simulating specific electrode placement, immediate in-context view of each electrode contact, and the cortical entry site are available within seconds. Post implantation, electrode placement is verified by linearly registering post-operative images. Tactics has been particularly helpful for invasive electroencephalography electrodes where as many as 20 electrodes are planned and placed within minutes. Currently, no commercial system has a workflow supporting the efficient placement of this many electrodes. Tactics includes a novel implementation of automated frame localization and a user-extensible mechanism for importing electrode specifications for visualization of individual electrode contacts. The system was systematically validated, through comparison against gold-standard techniques and quantitative analysis of targeting accuracy using a purpose-built imaging phantom mountable by a stereotactic frame. Internal to our research group, Tactics has been used to plan over 300 depth-electrode targets and trajectories in over 50 surgical cases, and to plan dozens of stereotactic biopsies. Source code and pre-built binaries for Tactics are public and open-source, enabling use and contribution by the extended community.
{"title":"Tactics: an open-source platform for planning, simulating and validating stereotactic surgery.","authors":"David S P Adair, Keith S Gomes, Zelma H T Kiss, David G Gobbi, Yves P Starreveld","doi":"10.1080/24699322.2020.1760354","DOIUrl":"https://doi.org/10.1080/24699322.2020.1760354","url":null,"abstract":"<p><p>Frame-based stereotaxy is widely used for planning and implanting deep-brain electrodes. In 2013, as part of a clinical study on deep-brain stimulation for treatment-resistant depression, our group identified a need for software to simulate and plan stereotactic procedures. Shortcomings in extant commercial systems encouraged us to develop Tactics. Tactics is purpose-designed for frame-based stereotactic placement of electrodes. The workflow is far simpler than commercial systems. By simulating specific electrode placement, immediate in-context view of each electrode contact, and the cortical entry site are available within seconds. Post implantation, electrode placement is verified by linearly registering post-operative images. Tactics has been particularly helpful for invasive electroencephalography electrodes where as many as 20 electrodes are planned and placed within minutes. Currently, no commercial system has a workflow supporting the efficient placement of this many electrodes. Tactics includes a novel implementation of automated frame localization and a user-extensible mechanism for importing electrode specifications for visualization of individual electrode contacts. The system was systematically validated, through comparison against gold-standard techniques and quantitative analysis of targeting accuracy using a purpose-built imaging phantom mountable by a stereotactic frame. Internal to our research group, Tactics has been used to plan over 300 depth-electrode targets and trajectories in over 50 surgical cases, and to plan dozens of stereotactic biopsies. Source code and pre-built binaries for Tactics are public and open-source, enabling use and contribution by the extended community.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2020.1760354","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37929296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-12-01DOI: 10.1080/24699322.2020.1801842
Congmin Yang, Zijian Zhao, Sanyuan Hu
Intraoperative detection and tracking of minimally invasive instruments is a prerequisite for computer- and robotic-assisted surgery. Since additional hardware, such as tracking systems or the robot encoders, are cumbersome and lack accuracy, surgical vision is evolving as a promising technique to detect and track the instruments using only endoscopic images. The present paper presents a review of the literature regarding image-based laparoscopic tool detection and tracking using convolutional neural networks (CNNs) and consists of four primary parts: (1) fundamentals of CNN; (2) public datasets; (3) CNN-based methods for the detection and tracking of laparoscopic instruments; and (4) discussion and conclusion. To help researchers quickly understand the various existing CNN-based algorithms, some basic information and a quantitative estimation of several performances are analyzed and compared from the perspective of 'partial CNN approaches' and 'full CNN approaches'. Moreover, we highlight the challenges related to research of CNN-based detection algorithms and provide possible future developmental directions.
{"title":"Image-based laparoscopic tool detection and tracking using convolutional neural networks: a review of the literature.","authors":"Congmin Yang, Zijian Zhao, Sanyuan Hu","doi":"10.1080/24699322.2020.1801842","DOIUrl":"https://doi.org/10.1080/24699322.2020.1801842","url":null,"abstract":"<p><p>Intraoperative detection and tracking of minimally invasive instruments is a prerequisite for computer- and robotic-assisted surgery. Since additional hardware, such as tracking systems or the robot encoders, are cumbersome and lack accuracy, surgical vision is evolving as a promising technique to detect and track the instruments using only endoscopic images. The present paper presents a review of the literature regarding image-based laparoscopic tool detection and tracking using convolutional neural networks (CNNs) and consists of four primary parts: (1) fundamentals of CNN; (2) public datasets; (3) CNN-based methods for the detection and tracking of laparoscopic instruments; and (4) discussion and conclusion. To help researchers quickly understand the various existing CNN-based algorithms, some basic information and a quantitative estimation of several performances are analyzed and compared from the perspective of 'partial CNN approaches' and 'full CNN approaches'. Moreover, we highlight the challenges related to research of CNN-based detection algorithms and provide possible future developmental directions.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2020.1801842","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38345293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-11-16DOI: 10.1080/24699322.2020.1850866
Lei Wang, Huimin Xie, Wentao Han, Xiao Yang, Lili Shi, Jiancheng Dong, Kui Jiang, Huiqun Wu
Abstract A knowledge graph is a structured representation of data that can express entity and relational knowledge. More attention has been paid to the study of a clinical knowledge graph, especially in the field of chronic diseases. However, knowledge graph construction is based mainly on electronic medical records and other data sources, and the authority of the constructed knowledge graph presents some problems. Therefore, regarding the quality of evidence, this study, in combination with experimental research on system evaluation and meta-analysis presents some new information, On the basis of evidence-based medicine (EBM), the secondary results of systematic evaluation and meta-analyses of social, psychological, and behavioral aspects were extracted as data for the core nodes and edges of a knowledge graph to construct a graph of type 2 diabetes (T2D) and its complications. In this study, relevant life-style evidence that are factors for the risk of diabetic retinopathy (DR), diabetic nephropathy (DN), diabetic foot (DF), and diabetic depression (DD), and the results of several of the relevant clinical test, including bariatric surgery, myopia, lipid-lowering drugs, lipid-lowering drug duration, blood glucose control, disease course, glycosylated hemoglobin, fasting blood glucose, hypertension, sex, smoking and other common lifestyle characteristics were finally extracted. The evidence-based knowledge graph of the DM complications was constructed by extracting relevant disease, risk factors, risk outcomes, and other diabetes entities and the strength of the data for the odds ratio (OR) or relative risk (RR) correlations from clinical evidence. Moreover, the risk prediction models constructed using a logistic model were incorporated into the knowledge graph to visualize the risk score of DM complications for each user. In short, the EBM-powered construction of the knowledge graph could provide high-quality information to support decisions for the prevention and control of diabetes and its complications.
{"title":"Construction of a knowledge graph for diabetes complications from expert-reviewed clinical evidences.","authors":"Lei Wang, Huimin Xie, Wentao Han, Xiao Yang, Lili Shi, Jiancheng Dong, Kui Jiang, Huiqun Wu","doi":"10.1080/24699322.2020.1850866","DOIUrl":"https://doi.org/10.1080/24699322.2020.1850866","url":null,"abstract":"Abstract A knowledge graph is a structured representation of data that can express entity and relational knowledge. More attention has been paid to the study of a clinical knowledge graph, especially in the field of chronic diseases. However, knowledge graph construction is based mainly on electronic medical records and other data sources, and the authority of the constructed knowledge graph presents some problems. Therefore, regarding the quality of evidence, this study, in combination with experimental research on system evaluation and meta-analysis presents some new information, On the basis of evidence-based medicine (EBM), the secondary results of systematic evaluation and meta-analyses of social, psychological, and behavioral aspects were extracted as data for the core nodes and edges of a knowledge graph to construct a graph of type 2 diabetes (T2D) and its complications. In this study, relevant life-style evidence that are factors for the risk of diabetic retinopathy (DR), diabetic nephropathy (DN), diabetic foot (DF), and diabetic depression (DD), and the results of several of the relevant clinical test, including bariatric surgery, myopia, lipid-lowering drugs, lipid-lowering drug duration, blood glucose control, disease course, glycosylated hemoglobin, fasting blood glucose, hypertension, sex, smoking and other common lifestyle characteristics were finally extracted. The evidence-based knowledge graph of the DM complications was constructed by extracting relevant disease, risk factors, risk outcomes, and other diabetes entities and the strength of the data for the odds ratio (OR) or relative risk (RR) correlations from clinical evidence. Moreover, the risk prediction models constructed using a logistic model were incorporated into the knowledge graph to visualize the risk score of DM complications for each user. In short, the EBM-powered construction of the knowledge graph could provide high-quality information to support decisions for the prevention and control of diabetes and its complications.","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2020-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2020.1850866","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38336600","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-12-01Epub Date: 2019-01-04DOI: 10.1080/24699322.2018.1545872
Changhwan Lee, Jongseong Jang, Hyung Wook Kim, Young Soo Kim, Yeesuk Kim
Understanding the morphology of the acetabulum is necessary for preoperative evaluation in hip surgery. The purpose of this study was to (1) establish a novel method for measuring three-dimensional (3D) acetabular orientation, (2) quantify the reliability of this method, and (3) describe relevant characteristics of three-dimensional (3D) acetabular orientation among normal Asian subjects. Computed tomography (CT) scans of the pelvis that had been performed for suspected non-musculoskeletal conditions were obtained from 200 subjects (60 males, 140 females). A novel method was developed to measure 3D acetabular orientation with a semi-automatically determined pelvic coordinate system based on the anterior pelvic plane (APP). To quantify the robustness of our method, we analyzed the results obtained from 20 patients at different times and with different raters and pelvic poses in the same CT volume. To determine morphological differences of the acetabulum by age and sex, we analyzed the parameters of 200 CT volumes. Each intraclass correlation coefficient (ICC) values for intra- and inter-observer reliability were over 0.975 and 0.945, demonstrating high reliability. Furthermore, agreement between the angles determined from the original volume and the rotated volume was nearly perfect (ICCs > 0.956). Multiple linear regression analysis with age and sex as covariates indicated that acetabular inclination was not significantly associated with age (p = 0.687) or sex (p = 0.09). There was also no evidence that acetabular anteversion was associated with age (p = 0.383) or sex (p = 0.53). Our method showed excellent reliability for determining acetabular orientation, as it is robust, fast, and easily applicable to larger populations. In addition, the results of the analysis of acetabular orientation by age and sex can be used as a reference in various diagnostic procedures in orthopedics.
{"title":"Three-dimensional analysis of acetabular orientation using a semi-automated algorithm.","authors":"Changhwan Lee, Jongseong Jang, Hyung Wook Kim, Young Soo Kim, Yeesuk Kim","doi":"10.1080/24699322.2018.1545872","DOIUrl":"https://doi.org/10.1080/24699322.2018.1545872","url":null,"abstract":"<p><p>Understanding the morphology of the acetabulum is necessary for preoperative evaluation in hip surgery. The purpose of this study was to (1) establish a novel method for measuring three-dimensional (3D) acetabular orientation, (2) quantify the reliability of this method, and (3) describe relevant characteristics of three-dimensional (3D) acetabular orientation among normal Asian subjects. Computed tomography (CT) scans of the pelvis that had been performed for suspected non-musculoskeletal conditions were obtained from 200 subjects (60 males, 140 females). A novel method was developed to measure 3D acetabular orientation with a semi-automatically determined pelvic coordinate system based on the anterior pelvic plane (APP). To quantify the robustness of our method, we analyzed the results obtained from 20 patients at different times and with different raters and pelvic poses in the same CT volume. To determine morphological differences of the acetabulum by age and sex, we analyzed the parameters of 200 CT volumes. Each intraclass correlation coefficient (ICC) values for intra- and inter-observer reliability were over 0.975 and 0.945, demonstrating high reliability. Furthermore, agreement between the angles determined from the original volume and the rotated volume was nearly perfect (ICCs > 0.956). Multiple linear regression analysis with age and sex as covariates indicated that acetabular inclination was not significantly associated with age (<i>p</i> = 0.687) or sex (<i>p</i> = 0.09). There was also no evidence that acetabular anteversion was associated with age (<i>p</i> = 0.383) or sex (<i>p</i> = 0.53). Our method showed excellent reliability for determining acetabular orientation, as it is robust, fast, and easily applicable to larger populations. In addition, the results of the analysis of acetabular orientation by age and sex can be used as a reference in various diagnostic procedures in orthopedics.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2018.1545872","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36823010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-12-01Epub Date: 2019-03-01DOI: 10.1080/24699322.2018.1542029
A Karim Ahmed, Corinna C Zygourakis, Samuel Kalb, Alex M Zhu, Camilo A Molina, Bowen Jiang, Ari M Blitz, Ali Bydon, Neil R Crawford, Nicholas Theodore
Robotics in spinal surgery has significant potential benefits for both surgeons and patients, including reduced surgeon fatigue, improved screw accuracy, decreased radiation exposure, greater options for minimally invasive surgery, and less time required to train residents on techniques that can have steep learning curves. However, previous robotic systems have several drawbacks, which are addressed by the innovative ExcelsiusGPSTM robotic system. The robot is secured to the operating room floor, not the patient. It has a rigid external arm that facilitates direct transpedicular drilling and screw placement, without requiring K-wires. In addition, the ExcelsisuGPSTM has integrated neuronavigation, not present in other systems. It also has surveillance marker that immediately alerts the surgeon in the event of loss of registration, and a lateral force meter to alert the surgeon in the event of skiving. Here, we present the first spinal surgery performed with the assistance of this newly approved robot. The surgery was performed with excellent screw placement, minimal radiation exposure to the patient and surgeon, and the patient had a favorable outcome. We report the first operative case with the ExcelsisuGPSTM, and the first spine surgery utilizing real-time image-guided robotic assistance.
{"title":"First spine surgery utilizing real-time image-guided robotic assistance.","authors":"A Karim Ahmed, Corinna C Zygourakis, Samuel Kalb, Alex M Zhu, Camilo A Molina, Bowen Jiang, Ari M Blitz, Ali Bydon, Neil R Crawford, Nicholas Theodore","doi":"10.1080/24699322.2018.1542029","DOIUrl":"https://doi.org/10.1080/24699322.2018.1542029","url":null,"abstract":"<p><p>Robotics in spinal surgery has significant potential benefits for both surgeons and patients, including reduced surgeon fatigue, improved screw accuracy, decreased radiation exposure, greater options for minimally invasive surgery, and less time required to train residents on techniques that can have steep learning curves. However, previous robotic systems have several drawbacks, which are addressed by the innovative ExcelsiusGPS<sup>TM</sup> robotic system. The robot is secured to the operating room floor, not the patient. It has a rigid external arm that facilitates direct transpedicular drilling and screw placement, without requiring K-wires. In addition, the ExcelsisuGPS<sup>TM</sup> has integrated neuronavigation, not present in other systems. It also has surveillance marker that immediately alerts the surgeon in the event of loss of registration, and a lateral force meter to alert the surgeon in the event of skiving. Here, we present the first spinal surgery performed with the assistance of this newly approved robot. The surgery was performed with excellent screw placement, minimal radiation exposure to the patient and surgeon, and the patient had a favorable outcome. We report the first operative case with the ExcelsisuGPS<sup>TM</sup>, and the first spine surgery utilizing real-time image-guided robotic assistance.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2018.1542029","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37014053","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
It is technically demanding and requires rich experience to insert the translaminar facet screw(TFS) via the paramedian mini-incision approach. It seems that it is easy to place the TFS using computer-assisted design and rapid prototyping(RP) techniques. However, the accuracy and safety of these techniques is still unknown. The aim of this study is to assess the accuracy and safety of translaminar facet screw placement in multilevel unilateral transforaminal lumbar interbody fusion using a rapid prototyping drill guide template system. A patient-matched rapid prototyping translaminar facet screw guide was examined in fourteen cadaveric lumbar spine specimens. A three-dimensional (3D) preoperative screw trajectory was constructed using spinal computed tomography scans, from which individualized guides were developed for the placement of translaminar facet screws. Following bone tunnel establishment, the 3D positioning of the entry point and trajectory of the screws was compared to the preoperative plan as found in the Mimics software.Among 60 trajectories eligible for assessment, no cases of clinically significant laminar perforation were found. The mean deviation between the planned and the actual starting points on spinous process was 1.22 mm. The mean tail and submergence angle deviation was found to be 0.68°and 1.46°, respectively. Among all the deviations, none were found to have any statistical significance. These results indicate that translaminar facet screw placement using the guide system is both accurate and safe.
{"title":"Translaminar facet joint screw insertion with a rapid prototyping guide template: a cadaver study.","authors":"Yuanwu Cao, Wenjun Zhang, Yun Liang, Zhenzhou Feng, Chun Jiang, Zixian Chen, Xiaoxing Jiang","doi":"10.1080/24699322.2018.1542027","DOIUrl":"https://doi.org/10.1080/24699322.2018.1542027","url":null,"abstract":"<p><p>It is technically demanding and requires rich experience to insert the translaminar facet screw(TFS) via the paramedian mini-incision approach. It seems that it is easy to place the TFS using computer-assisted design and rapid prototyping(RP) techniques. However, the accuracy and safety of these techniques is still unknown. The aim of this study is to assess the accuracy and safety of translaminar facet screw placement in multilevel unilateral transforaminal lumbar interbody fusion using a rapid prototyping drill guide template system. A patient-matched rapid prototyping translaminar facet screw guide was examined in fourteen cadaveric lumbar spine specimens. A three-dimensional (3D) preoperative screw trajectory was constructed using spinal computed tomography scans, from which individualized guides were developed for the placement of translaminar facet screws. Following bone tunnel establishment, the 3D positioning of the entry point and trajectory of the screws was compared to the preoperative plan as found in the Mimics software.Among 60 trajectories eligible for assessment, no cases of clinically significant laminar perforation were found. The mean deviation between the planned and the actual starting points on spinous process was 1.22 mm. The mean tail and submergence angle deviation was found to be 0.68°and 1.46°, respectively. Among all the deviations, none were found to have any statistical significance. These results indicate that translaminar facet screw placement using the guide system is both accurate and safe.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2018.1542027","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36879955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-10-01Epub Date: 2019-01-28DOI: 10.1080/24699322.2018.1560088
Zhaoyang Wang, Junjiang Zhu, Tianhong Yan, Lulu Yang
Purpose: Wavelet denoising is one of the denoising methods commonly used for ECG signals. However, due to the frequency overlap between the EMG and ECG, the feeble characteristics of ECG signals exists the risk of being weakened in the process of filtering noise. This paper presents a method of modified wavelet design and applies it to the denoising of ECG signals. Materials and methods: The optimized filter coefficients are obtained by approximating the amplitude-frequency response of the ideal filter, and the wavelet is constructed with the optimized filter coefficients. The algorithm is tested by clinical ECG data. Results: The results show that the proposed denoising method can remove the high-frequency noise effectively and enhance the characteristic information of P waves and T waves, and retain the characteristic information of the atrial fibrillation signals simultaneously. Compared with db4 and sym4 wavelets, the proposed wavelet can improve the signal to noise ratio and reduce the mean square error effectively at the same time. Conclusion: The modified wavelet design method proposed in this paper can effectively remove high-frequency noise while retaining and enhancing weak features. It provides a theoretical guidance for the de-noising of ECG signals in mobile medicine and also provides a way for other types of weak feature signal denoising.
{"title":"A new modified wavelet-based ECG denoising.","authors":"Zhaoyang Wang, Junjiang Zhu, Tianhong Yan, Lulu Yang","doi":"10.1080/24699322.2018.1560088","DOIUrl":"https://doi.org/10.1080/24699322.2018.1560088","url":null,"abstract":"<p><p><b>Purpose:</b> Wavelet denoising is one of the denoising methods commonly used for ECG signals. However, due to the frequency overlap between the EMG and ECG, the feeble characteristics of ECG signals exists the risk of being weakened in the process of filtering noise. This paper presents a method of modified wavelet design and applies it to the denoising of ECG signals. <b>Materials and methods:</b> The optimized filter coefficients are obtained by approximating the amplitude-frequency response of the ideal filter, and the wavelet is constructed with the optimized filter coefficients. The algorithm is tested by clinical ECG data. <b>Results:</b> The results show that the proposed denoising method can remove the high-frequency noise effectively and enhance the characteristic information of P waves and T waves, and retain the characteristic information of the atrial fibrillation signals simultaneously. Compared with db4 and sym4 wavelets, the proposed wavelet can improve the signal to noise ratio and reduce the mean square error effectively at the same time. <b>Conclusion:</b> The modified wavelet design method proposed in this paper can effectively remove high-frequency noise while retaining and enhancing weak features. It provides a theoretical guidance for the de-noising of ECG signals in mobile medicine and also provides a way for other types of weak feature signal denoising.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2019-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2018.1560088","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36904656","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-10-01Epub Date: 2019-01-08DOI: 10.1080/24699322.2018.1557888
Dan Liu, Qisong Wang, Yan Zhang, Xin Liu, Jingyang Lu, Jinwei Sun
Surface EEG (Electroencephalography) signal is vulnerable to interference due to its characteristics and sampling methods. So it is of great importance to evaluate the collected EEG signal prior to use. Traditional methods usually use the impedance between skin and electrode to estimate the quality of the EEG signal, which has shortcomings such as monotonous features, high false positive rates, and poor real-time capability. Aiming at addressing these issues, this paper presents a novel model of EEG quality assessment based on Fuzzy Comprehensive Evaluation method. The developed model employs amplitude, power frequency ratio, and alpha band PSD (Power Spectral Density) ratio of resting EEG signal as evaluation factors, and performs a quantitative assessment of the signal quality. Experiments show that the proposed model can significantly determine the EEG signal quality. In addition, the model is simple in implementation with low computational complexity, and is able to present the EEG quality evaluation results in real time. Before the formal measurement, collecting short-term resting EEG data, and evaluating the EEG signal quality and current signal acquisition environment using the model, the collection efficiency of qualified EEG signals can be greatly improved.
{"title":"A study on quality assessment of the surface EEG signal based on fuzzy comprehensive evaluation method.","authors":"Dan Liu, Qisong Wang, Yan Zhang, Xin Liu, Jingyang Lu, Jinwei Sun","doi":"10.1080/24699322.2018.1557888","DOIUrl":"https://doi.org/10.1080/24699322.2018.1557888","url":null,"abstract":"<p><p>Surface EEG (Electroencephalography) signal is vulnerable to interference due to its characteristics and sampling methods. So it is of great importance to evaluate the collected EEG signal prior to use. Traditional methods usually use the impedance between skin and electrode to estimate the quality of the EEG signal, which has shortcomings such as monotonous features, high false positive rates, and poor real-time capability. Aiming at addressing these issues, this paper presents a novel model of EEG quality assessment based on Fuzzy Comprehensive Evaluation method. The developed model employs amplitude, power frequency ratio, and alpha band PSD (Power Spectral Density) ratio of resting EEG signal as evaluation factors, and performs a quantitative assessment of the signal quality. Experiments show that the proposed model can significantly determine the EEG signal quality. In addition, the model is simple in implementation with low computational complexity, and is able to present the EEG quality evaluation results in real time. Before the formal measurement, collecting short-term resting EEG data, and evaluating the EEG signal quality and current signal acquisition environment using the model, the collection efficiency of qualified EEG signals can be greatly improved.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2019-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2018.1557888","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36845147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-10-01Epub Date: 2019-01-28DOI: 10.1080/24699322.2018.1560093
Yawei Wang, Hao Han, Lei Wang, Jingrong Liao, Bing Xie, Ying Ji, Yuanyuan Xu
Fast 3D imaging and measurement of cells are of great importance in many fields associated with the life science. In this paper, only using two phase images in orthogonal directions, a geometric rotation method for 3D fast morphology reconstruction is proposed in view of more spheroid cells in blood cells. In this method, at first, the edges of a cell in two orthogonal projection directions are extracted from the corresponding phase images, and theirs centers and axes are determined. Then, with the geometric rotation method, the 3D surfaces of the cell membrane and its nuclei are reconstructed respectively. After all, the 3D complete morphology of the cell is reconstructed according to their space geometry relation. Simulation and experimental results demonstrate the validity and accuracy of this method for spheroid cells. Compared with other reconstruction methods, the image speed is improved since the multiple measurements or iterative procedures are not required. It provides a new approach to image the 3D morphological structure of spheroid blood cells.
{"title":"A simple geometric method for 3D morphology reconstruction of a cell based on two orthogonal phase images.","authors":"Yawei Wang, Hao Han, Lei Wang, Jingrong Liao, Bing Xie, Ying Ji, Yuanyuan Xu","doi":"10.1080/24699322.2018.1560093","DOIUrl":"https://doi.org/10.1080/24699322.2018.1560093","url":null,"abstract":"<p><p>Fast 3D imaging and measurement of cells are of great importance in many fields associated with the life science. In this paper, only using two phase images in orthogonal directions, a geometric rotation method for 3D fast morphology reconstruction is proposed in view of more spheroid cells in blood cells. In this method, at first, the edges of a cell in two orthogonal projection directions are extracted from the corresponding phase images, and theirs centers and axes are determined. Then, with the geometric rotation method, the 3D surfaces of the cell membrane and its nuclei are reconstructed respectively. After all, the 3D complete morphology of the cell is reconstructed according to their space geometry relation. Simulation and experimental results demonstrate the validity and accuracy of this method for spheroid cells. Compared with other reconstruction methods, the image speed is improved since the multiple measurements or iterative procedures are not required. It provides a new approach to image the 3D morphological structure of spheroid blood cells.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2019-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2018.1560093","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36904140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-10-01Epub Date: 2019-02-11DOI: 10.1080/24699322.2018.1560099
Shidong Zhu, Lin Luo, Bibo Yang, Xinghui Li, Kai Ni, Qian Zhou, Xiaohao Wang
A novel pulsatile assist device, intra-ventricular assist device, was proposed to address various disadvantages existing in conventional pulsatile assist device, such as the large size, accessories and reduced pulsatility. The assist device was designed, fabricated and implanted into the sac from left ventricular apex in a home-designed mock circulatory system. In vitro test was carried out and results demonstrated that the response time did not vary with the heart rate, and co-pulsatiled synchronously with native heart by electrocardiograph. The key parameter, stroke volume of proposed device was precisely measured under different afterloads (60, 80, 100, and 120 mmHg), drive pressure (from 90 to 300 mmHg at 30 mmHg intervals), and heart rate (45-150 beats per minute). The measurement results revealed that the output characteristics of device, stroke volume increased with increasing drive pressure but decreased with increasing peripheral resistance, were consistent with the native heart. The proposed pump was then coupled with mock system that was set to a heart failure mode and the circulatory responses were tested. Results showed that the device improved left ventricular pressure from 106 to 158 mmHg, and stroke volume from 25.5 to 44 ml at 90 bpm.
{"title":"In vitro testing of an intra-ventricular assist device.","authors":"Shidong Zhu, Lin Luo, Bibo Yang, Xinghui Li, Kai Ni, Qian Zhou, Xiaohao Wang","doi":"10.1080/24699322.2018.1560099","DOIUrl":"https://doi.org/10.1080/24699322.2018.1560099","url":null,"abstract":"<p><p>A novel pulsatile assist device, intra-ventricular assist device, was proposed to address various disadvantages existing in conventional pulsatile assist device, such as the large size, accessories and reduced pulsatility. The assist device was designed, fabricated and implanted into the sac from left ventricular apex in a home-designed mock circulatory system. In vitro test was carried out and results demonstrated that the response time did not vary with the heart rate, and co-pulsatiled synchronously with native heart by electrocardiograph. The key parameter, stroke volume of proposed device was precisely measured under different afterloads (60, 80, 100, and 120 mmHg), drive pressure (from 90 to 300 mmHg at 30 mmHg intervals), and heart rate (45-150 beats per minute). The measurement results revealed that the output characteristics of device, stroke volume increased with increasing drive pressure but decreased with increasing peripheral resistance, were consistent with the native heart. The proposed pump was then coupled with mock system that was set to a heart failure mode and the circulatory responses were tested. Results showed that the device improved left ventricular pressure from 106 to 158 mmHg, and stroke volume from 25.5 to 44 ml at 90 bpm.</p>","PeriodicalId":56051,"journal":{"name":"Computer Assisted Surgery","volume":null,"pages":null},"PeriodicalIF":2.1,"publicationDate":"2019-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1080/24699322.2018.1560099","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36949389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}