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Genome Mapping to Enhance Efficient Marker-Assisted Selection and Breeding of the Oil Palm (Elaeis guineensis Jacq.) 基因组定位提高油棕(Elaeis guineensis Jacq.)的高效标记辅助选择和育种
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.1212026
E. Seyum, N. Bille, W. G. Abtew, Godswill Ntsomboh-Ntsefong, J. Bell
The oil palm (Elaeis guineensis Jacq.) is one of the major cultivated crops among the economically important palm species. It is cultivated mainly for its edible oil. For a perennial crop like oil palm, the use of Marker Assisted Selection (MAS) techniques helps to reduce the breeding cycle and improve the economic products. Genetic and physical maps are important for sequencing experiments since they show the exact positions of genes and other distinctive features in the chromosomal DNA. This review focuses on the role of genome mapping in oil palm breeding. It assesses the role of genome mapping in oil palm breeding and discusses the major factors affecting such mapping. Ge-nerating a high-density map governed by several factors, for instance, marker type, marker density, number of mapped population, and software used are the major issues treated. The general conclusion is that genome mapping is pivotal in the construction of a genetic linkage map. It helps to detect QTL and identify genes that control quantitative traits in oil palm. In perspective, the use of high-density molecular markers with a large number of markers, a large number mapping population, and up-to-date software is necessary for oil palm genome mapping.
油棕(Elaeis guineensis Jacq.)是经济上重要的棕榈品种中主要栽培作物之一。种植它主要是为了它的食用油。对于油棕这样的多年生作物,使用标记辅助选择(MAS)技术有助于缩短育种周期,提高经济效益。遗传和物理图谱对测序实验很重要,因为它们显示了基因在染色体DNA中的确切位置和其他独特特征。本文综述了基因组定位在油棕育种中的作用。评估了基因组定位在油棕育种中的作用,并讨论了影响基因组定位的主要因素。生成由几个因素控制的高密度地图是处理的主要问题,例如,标记类型、标记密度、映射人口数量和使用的软件。总的结论是,基因组作图是构建遗传连锁图谱的关键。这有助于油棕QTL的检测和数量性状控制基因的鉴定。因此,油棕基因组作图需要大量的高密度分子标记、大量的作图群体和最新的软件。
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引用次数: 3
The Fish Fauna of the Future Large Size Reservoir of Ouessa, on the Mouhoun River, Burkina Faso 未来大型水库Ouessa的鱼类区系,在Mouhoun河上,布基纳法索
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.1210020
R. Ouedraogo, F. M. Y. Sawadogo, Nomwine Da, K. Mano
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引用次数: 0
Ontogenes and the Paradox of Homologous Pairing 本体发生与同源配对悖论
Pub Date : 2021-01-01 DOI: 10.4236/ABB.2021.121001
B. F. Chadov, N. B. Fedorova
The mutations in ontogenes have been shown to drastically increase the nondisjunction of X chromosomes in the D. melanogaster meiosis. This means that ontogenes are involved in the process that brings the homologs together although both the genes and ontogenes are finally paired. The phenomenon named the paradox of homologous pairing is described. Chromosomal rearrangements (inversions and translocations) lead to formation of specific topological figures (loops and crosses) during pairing. The mutual arrangement of the nucleotide sequences of homologous ontogenes before and after formation of such figures is different. Their arrangement coincides after a figure is formed and the pairing looks homologous. However, before the figure is formed, their arrangement does not match and the pairing is actually nonhomologous. The available data on ontogenes allows this paradox to be resolved. It is assumed that the sequence of each ontogene possesses a factor that 1) is a product of this nucleotide sequence; 2) is co-located with this sequence; and 3) generates approaching independently of nucleotide sequence position in space. The sole candidate to the role of this factor is the DNA conformation of ontogene. The conformation in the form of a solenoid of DNA is able to generate an electromagnetic field independent of the orientation of the DNA itself. The proposed resolution of the paradox is considered in terms of the problem of genetic homology.
个体基因的突变已被证明在D. melanogaster减数分裂中急剧增加X染色体的不分离。这意味着个体基因参与了将同源物聚集在一起的过程,尽管基因和个体基因最终都是配对的。描述了一种称为“同源配对悖论”的现象。染色体重排(倒位和易位)导致在配对过程中形成特定的拓扑图形(环和交叉)。同源同源基因在形成这种图形前后的核苷酸序列相互排列是不同的。在形成图形后,它们的排列一致,并且配对看起来是同源的。然而,在图形形成之前,它们的排列并不匹配,配对实际上是非同源的。关于个体基因的现有数据使这个悖论得以解决。假定每个个体基因的序列都具有一个因子:1)是该核苷酸序列的产物;2)与该序列位于同一位置;3)与核苷酸序列在空间中的位置无关。这个因素的作用的唯一候选是个体基因的DNA构象。以螺线管形式的DNA构象能够产生与DNA本身的方向无关的电磁场。从基因同源性的角度来考虑这个悖论的解决方案。
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引用次数: 4
Comparison of Protein and Amino Acids in the Extracts of Two Edible Mushroom, Pleurotus sajor-caju and Schizophyllum commune 两种食用菌平菇和裂叶菇提取物中蛋白质和氨基酸的比较
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.129018
Sujjat Al Azad, Vivian Chong Ai Ping
This study was undertaken to determine total protein (%) and profiles of amino acid and made comparison between the aqueous and organic solvent extracted mushroom. Extraction was made from two edible, Pleurotus sajor-caju (commercial) and Schizophyllum commune (wild) types of mushrooms. Four types of solvents were used for the extraction include 100% aqueous, 50% ethanol, 50% methanol and 50% acetone. True protein of mushroom extract was analyzed with colorimetric Lowry method and amino acids were determined by using high-performance liquid chromatograph (HPLC). The range of 1.06% to 3.43% and 1.30% to 2.17% total protein value were obtained in the extracts of P. sajor-caju and S. commune respectively, while the highest total protein of 3.43% was determined in aqueous extracted P. sajor-caju mushroom. The amount of total amino acids of S. commune and P. sajor-caju were in the range of 308.65 mg/g to 443.84 mg/g and 172.52 mg/g to 400.76 mg/g, respectively. The highest content of 443.84 mg/g total amino acids and 77.08 mg/g of essential amino acids were obtained in the aqueous extracted Schizophyllum commune. On the other hand the total content of essential amino acids (EAA). Essential amino acid of both mushrooms was dominated by leucine along with threonine and alanine, but the highest contents were determined from the extract of Schizophyllum commune. Aqueous extraction was effective in both types of mushroom for the protein components as well essential amino acids compared to other organic solvents that were used in extraction process in this study.
本研究测定了香菇的总蛋白(%)和氨基酸谱,并对水提法和有机溶剂提法进行了比较。对两种可食用蘑菇——平菇(Pleurotus sajoro -caju)和裂叶菌(Schizophyllum commune)进行了提取。提取溶剂为100%水溶液、50%乙醇、50%甲醇和50%丙酮。采用Lowry比色法分析香菇提取物的真蛋白含量,高效液相色谱法测定其氨基酸含量。两种提取液的总蛋白含量分别为1.06% ~ 3.43%和1.30% ~ 2.17%,其中水提液的总蛋白含量最高,为3.43%。两种植物的总氨基酸含量分别为308.65 ~ 443.84 mg/g和172.52 ~ 400.76 mg/g。裂叶菌水提液中总氨基酸含量最高,为443.84 mg/g,必需氨基酸含量最高,为77.08 mg/g。另一方面,必需氨基酸(EAA)的总含量。两种蘑菇的必需氨基酸均以亮氨酸、苏氨酸和丙氨酸为主,但以裂叶菌提取物含量最高。与其他有机溶剂相比,水提法对两种蘑菇的蛋白质成分和必需氨基酸的提取都是有效的。
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引用次数: 3
Effect of High Concentrate Corn Stalk Particle Size on Physical State and Production Performance of Lactating Dairy Cows 高精料玉米秸秆粒度对泌乳奶牛身体状态和生产性能的影响
Pub Date : 2021-01-01 DOI: 10.4236/ABB.2021.122004
Xueyan Lin, Deqing Zhang, Lingxue Ju, Yiyao Zhang, Yu’e Jiang, Q. Hou, Zhiyong Hu, Yun Wang, Zhonghua Wang
In order to realize the application of corn stalk in cow feed, we designed experiments to explore the effect of a certain proportion of corn stalk on the performance of lactating dairy cows. 9 multiparous mid-lactating cows were allocated at random to three groups, each containing 3 intact cows. The trial consisted of three periods and three dietary treatments with a 3 × 3 Latin square design. The diets were normal concentrats plus dried corn stalk chopped to 5 - 8 cm long (N), high concentrates plus dried corn stalks chopped to a length of approximately 5 - 8 cm by a mower (H) while the milled corn stalks were passed through a pulviser with a 2 cm pore size (MH). Each cow was measured for dry matter intake (DMI), ruminal pH, rumen fermentation, selective feeding behavior and production performance. The results showed that MH led to a significantly higher intake of DM, neutral detergent fiber (NDF), forage NDF (FNDF), acid detergent fiber (ADF), crude protein (CP) and organic matter (OM) than N and H (P ity for the dietary component. MH resulted in a significantly higher milk production (P P = 0.055). There were no significant differences in the milk components (P = 0.424) and lactose (P = 0.113) between cows fed N and MH. The high-concentrates plus milled corn stalk diet can increase the milk yield under the premise of normal rumen pH in dairy cows, thereby generating higher economic benefits. And milled corn stalk can effectively inhibit the cow’s selective eating of low-quality roughage.
为了实现玉米秸秆在奶牛饲料中的应用,我们设计了试验,探索一定比例玉米秸秆对泌乳奶牛生产性能的影响。选取9头产中期泌乳奶牛,随机分为3组,每组3头完整奶牛。试验采用3 × 3拉丁方设计,分为3个试验期和3个饲粮处理。饲粮为普通浓缩物加切碎至5 - 8cm长的干玉米秸秆(N),高浓缩物加切碎至约5 - 8cm长的干玉米秸秆(H),而碾磨后的玉米秸秆则通过孔径为2cm的粉碎机(MH)。测定每头奶牛的干物质采食量(DMI)、瘤胃pH、瘤胃发酵、选择饲养行为和生产性能。结果表明:饲粮中添加MH可显著提高饲粮中DM、中性洗涤纤维(NDF)、饲料NDF (FNDF)、酸性洗涤纤维(ADF)、粗蛋白质(CP)和有机物(OM)的采食量,高于添加N和H (P)。添加MH显著提高了产奶量(P P = 0.055)。饲喂N和MH的奶牛的乳成分(P = 0.424)和乳糖(P = 0.113)差异不显著。在奶牛瘤胃pH正常的前提下,高精料加玉米秸秆粉饲粮可以提高奶牛的产奶量,从而产生更高的经济效益。玉米秸秆碾磨能有效抑制奶牛对低品质粗饲料的选择性食用。
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引用次数: 0
Immobilization in Spheres of a Cocktail Rich in Xylanase Produced by the Fungus Fusarium sp. EA 1.3.1 for Hydrolysis of Sugarcane Bagasse 镰刀菌(Fusarium sp. EA 1.3.1)产木聚糖酶鸡尾酒球固定化蔗渣水解研究
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.1212028
Alice Gomes Miranda, Tarcisio Michael Ferreira Soares de Oliveira, R. C. de Lucas, D. L. Nelson, J. Roa, Vivian Machado Benassi
Second generation ethanol is produced from the degradation of lignocellulosic biomass using enzymes as catalysts, with emphasis on xylanases. These biocatalysts are often costly, but stable at high temperatures, and their reuse is of great value, so the immobilization of the enzymes can increase their appli-cability on an industrial scale. We sought to immobilize a cocktail rich in xylanase produced by the fungus Fusarium sp. EA 1.3.1 in alginate spheres, op-timize the immobilization method, characterize the immobilized derivatives, improve their physical-chemical characteristics, and perform the hydrolysis bagasse was achieved, and greater amounts of reducing sugars were obtained in the reaction with the conjugate. Thus, the cocktail rich in xylanase produced by the fungus Fusarium sp. EA1.3.1 was successfully immobilized on alginate spheres and possesses the potential to be used as a catalyst in industrial processes such as the lignocellulosic ethanol industry.
第二代乙醇是利用酶作为催化剂,主要是木聚糖酶,从木质纤维素生物质的降解中生产出来的。这些生物催化剂通常价格昂贵,但在高温下稳定,并且它们的重复使用具有很大的价值,因此固定化酶可以增加它们在工业规模上的应用。本研究试图将富含真菌Fusarium sp. EA 1.3.1产生的木聚糖酶的鸡尾酒固定在海藻酸盐球中,优化了固定方法,对固定衍生物进行了表征,改善了它们的物理化学特性,并实现了蔗渣的水解,并且在与缀合物的反应中获得了更多的还原糖。因此,由真菌Fusarium sp. EA1.3.1产生的富含木聚糖酶的混合物成功地固定在海藻酸盐球上,并具有作为工业过程催化剂的潜力,如木质纤维素乙醇工业。
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引用次数: 0
Antimicrobial Properties and Phytochemical Composition of Garcinia kola, Bryophyllum pinnatum, and Allium sativum Juices on Some Clinical Pathogens 藤黄、青叶和葱汁对临床病原菌的抑菌特性及植物化学成分研究
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.1211025
S. Amala, Simeon Nicholas Nweke, R. Nwalozie, Tombari Pius Monsi
Background: Medicinal plants have been in use since the origin of man. Many important chemical substances with biological functions that could be used for treatment and prevention of attack from bacteria, fungi, herbivorous mammals and insects are produced by different plants. Such compounds with useful properties have been recorded in their numbers, about 12,000 ac-counting for about 10% of total plant species. Aim: The aim of the study was to determine the antimicrobial efficacies of herbal extracts on some clinical pathogens. Methods: The antimicrobial activities of pressed juices of Allium sativum (garlic), Bryophyllum pinnatum and Garcinia kola neats and their dilutions were tested on pathogens such as Escherichia coli, Klebsiella pneumoniae, Proteus mirabilis, Staphylococcus aureus and Candida albicans to determine their susceptibility to the juices and their combinations. Agar well diffusion method was employed on Muller-Hinton agar to determine their antimicrobial susceptibility pattern. The phytochemical analysis of the plants’ juices were also determined. Results: At 100% (neat) the juices of G. kola, B. pinnatum and Garcinia kola showed substantial zones of inhibition against the pathogens with a zone diameter of about 22.0 mm and above. At 75% concentrations, the juices inhibited the pathogens tested against them. A. sativum (gar-lic) inhibited K. pneumonia, P. mirabilis, and S. aureus even at 50% concentration. C. albicans isolates were 60% susceptible to G. kola juice, 40% at 100% concentration. At 75% concentration of the juice, C. albicans isolates were also 60% susceptible to the juices. At 50% - 100% concentrations, C. albicans isolates were 100% sensitive to A. sativum extract. Conclusions: The medicinal plant juices tested against the pathogens possess some potentials worth exploiting as potent antimicrobial agents on gram-positive, gram-negative bacteria and the fungus.
背景:自人类起源以来,药用植物就一直在使用。许多重要的具有生物学功能的化学物质,可用于治疗和预防细菌、真菌、食草哺乳动物和昆虫的攻击,是由不同的植物产生的。这些具有有用特性的化合物的数量已被记录下来,约有12,000种,约占植物总数的10%。目的:研究中药提取物对临床病原菌的抑菌作用。方法:测定大蒜、苔藓、藤黄及其稀释液对大肠埃希菌、肺炎克雷伯菌、奇异变形杆菌、金黄色葡萄球菌、白色念珠菌等病原菌的抑菌活性,并测定其对果汁及其组合的敏感性。采用琼脂孔扩散法对Muller-Hinton琼脂进行抑菌敏感性分析。对植物汁液进行了植物化学分析。结果:在100%(纯)条件下,可乐果、红曲霉和藤黄可乐果果汁对病原菌均有明显的抑菌带,抑菌带直径约为22.0 mm及以上。在75%的浓度下,果汁抑制了针对它们的病原体。大蒜在50%浓度下也能抑制肺炎克雷伯菌、神奇假单胞菌和金黄色葡萄球菌。白色念珠菌对可乐果汁的敏感性为60%,100%浓度时为40%。在果汁浓度为75%时,分离的白色念珠菌对果汁也有60%的敏感性。在50% ~ 100%浓度下,白色念珠菌分离株对苜蓿提取物100%敏感。结论:药用植物汁液对革兰氏阳性菌、革兰氏阴性菌和真菌的抑菌作用具有一定的开发潜力。
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引用次数: 7
Identification and Characterization of Simple Sequence Repeats (SSR) Markers Associated with Downy Mildew Resistance Locus “RPV1” in Grapes 葡萄抗霜霉病位点“RPV1”相关SSR标记的鉴定与鉴定
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.1211024
N. Goyal, A. Nag, R. Samarth, A. Upadhyay, Kashmir Singh
The cultivation of grapes is severely impacted by the emergence of downy mildew (DM) disease which negatively affects quality and yield possibly re-sulting in heavy losses. Due to certain shortcomings in the usage of fungicides and the development of new cultivars by plant breeding, marker assisted selection (MAS) will be an efficient alternative method to introduce desired genes into the cultivated varieties in a short time period. The Simple sequence repeats (SSR) markers seem to be the most popular genetic marker of choice for MAS. In the present study, we identified 14 new SSR markers in RPV1 locus that are associated with downy mildew resistance in grapes. The characterization of the identified markers was carried out on the basis of various parameters such as types of repeat motifs, number of repeats, different classes and structure of microsatellites. Additionally, SSR genotyping in 56 different grape accessions was done to determine the susceptibility or resistance of these accessions to DM.
霜霉病的出现严重影响了葡萄的种植,影响了葡萄的品质和产量,可能造成重大损失。由于杀菌剂的使用和植物育种的新品种开发存在一定的不足,标记辅助选择(MAS)将成为在短时间内将所需基因引入栽培品种的一种有效的替代方法。简单重复序列(SSR)标记似乎是MAS最流行的遗传标记选择。在本研究中,我们在葡萄抗霜霉病的RPV1位点上发现了14个新的SSR标记。根据微卫星的重复基序类型、重复次数、不同类别和结构等参数对所鉴定的标记进行表征。此外,对56份不同的葡萄材料进行了SSR基因分型,以确定这些材料对DM的易感性或抗性。
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引用次数: 0
Composition of Human Atheroma Collected from Coronary Arteries during Coronary Artery Bypass Surgery 冠状动脉搭桥手术中采集的冠状动脉粥样硬化的组成
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.1210021
M. Acharya, P. Karmaker, M. Moniruzzaman, Abu Hasan, S. Aktar, A. B. Adhikary, Mala Khan
{"title":"Composition of Human Atheroma Collected from Coronary Arteries during Coronary Artery Bypass Surgery","authors":"M. Acharya, P. Karmaker, M. Moniruzzaman, Abu Hasan, S. Aktar, A. B. Adhikary, Mala Khan","doi":"10.4236/abb.2021.1210021","DOIUrl":"https://doi.org/10.4236/abb.2021.1210021","url":null,"abstract":"","PeriodicalId":65405,"journal":{"name":"生命科学与技术进展(英文)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"70467989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel Surgical Technique for Acoustic Transmitter Insertion in Rainbow Trout Reduces the Need for Surgical Training 虹鳟鱼声学发射器插入的新手术技术减少了手术训练的需要
Pub Date : 2021-01-01 DOI: 10.4236/abb.2021.129017
Nathan Huysman, Ashley Kelican, Lauren Anne Van Rysselberge, J. Kientz, J. Voorhees, M. E. Barnes
The implantation of acoustic transmitters into the peritoneal cavity of fish is typically performed by experienced surgeons. This study compared the effectiveness of an experienced and inexperienced surgeon performing two different types of transmitter insertion techniques on rainbow trout (Oncorhynchus mykiss). The methods used were either a traditional sutured ventral incision or a novel unsutured lateral incision. There was no significant difference in surgical duration, tag retention, or fish survival between the experienced and naïve surgeon. The time to complete surgical wound closure was not significantly different between the fish operated on by an experienced or naïve surgeon, and surgeon experience had no significant effect on the duration of inflammation. However, there were significant differences between the two surgical techniques, regardless of surgeon experience. The ventral incision with sutures method took approximately three times longer to complete than the lateral incision-only method. However, complete wound closure was significantly faster in the sutured ventral incision treatment compared to the unsutured lateral treatment. Post-surgery inflammation was over seven times longer in the fish with sutures compared to those only receiving a lateral incision. Tag retention was not significantly different between the two surgical methods. The results of this study indicate that the unsutured lateral surgical technique used in this experiment can be completed with minimal training and surgical experience in contrast to the standard technique requiring sutures. These results also provide additional support to the use of sutureless surgical techniques for acoustic transmitter implantation.
将声波发射器植入鱼的腹膜腔通常由经验丰富的外科医生进行。本研究比较了有经验和没有经验的外科医生对虹鳟(Oncorhynchus mykiss)实施两种不同类型的发射器插入技术的有效性。采用传统的腹侧缝合切口或新型的外侧未缝合切口。经验丰富的外科医生和naïve外科医生在手术时间、标签保留或鱼存活方面没有显著差异。由经验丰富的外科医生和naïve外科医生手术的鱼完成手术伤口愈合的时间没有显著差异,外科医生的经验对炎症持续时间没有显著影响。然而,无论外科医生经验如何,两种手术技术之间存在显著差异。腹侧切口缝合法的完成时间约为外侧切口的三倍。然而,与未缝合的外侧切口治疗相比,缝合腹侧切口治疗的完全伤口愈合速度明显更快。与只接受侧切口的鱼相比,接受缝合的鱼术后炎症的时间要长7倍以上。两种手术方式的标签留位无显著差异。本研究结果表明,与需要缝合的标准技术相比,本实验中使用的无缝合侧位手术技术只需最少的训练和手术经验即可完成。这些结果也为使用无缝线手术技术进行声发射机植入提供了额外的支持。
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引用次数: 1
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