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2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017)最新文献

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Texture analysis for infarcted myocardium detection on delayed enhancement MRI 延迟增强MRI检测梗死心肌的纹理分析
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950700
A. Larroza, M. P. López-Lereu, J. Monmeneu, V. Bodí, D. Moratal
Detection of infarcted myocardium in the left ventricle is achieved with delayed enhancement magnetic resonance imaging (DE-MRI). However, manual segmentation is tedious and prone to variability. We studied three texture analysis methods (run-length matrix, co-occurrence matrix, and autoregressive model) in combination with histogram features to characterize the infarcted myocardium. We evaluated 10 patients with chronic infarction to select the most discriminative features and to train a support vector machine (SVM) classifier. The classifier model was then used to segment five human hearts from the STACOM DE-MRI challenge at MICCAI 2012. The Dice coefficient was used to compare the segmentation results with the ground truth available in the STACOM dataset. Segmentation using texture features provided good results with an overall Dice coefficient of 0.71 ± 0.12 (mean ± standard deviation).
通过延迟增强磁共振成像(DE-MRI)检测左心室梗死心肌。然而,手工分割是乏味的,而且容易发生变化。我们研究了三种纹理分析方法(游程矩阵、共现矩阵和自回归模型)结合直方图特征来表征梗死心肌。我们评估了10例慢性梗死患者,以选择最具判别性的特征并训练支持向量机(SVM)分类器。随后,该分类器模型被用于在MICCAI 2012上分割来自STACOM DE-MRI挑战的五颗人类心脏。使用Dice系数将分割结果与STACOM数据集中可用的ground truth进行比较。纹理特征分割效果良好,总体Dice系数为0.71±0.12(均值±标准差)。
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引用次数: 5
Radiogenomic classification of the 1p/19q status in presumed low-grade gliomas 低级别胶质瘤中1p/19q状态的放射基因组学分类
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950601
S. V. D. Voort, R. Gahrmann, M. Bent, A. Vincent, W. Niessen, M. Smits, S. Klein
1p/19q co-deletion is an important prognostic factor in low grade gliomas. However, determination of the 1p/19q status currently requires a biopsy. To overcome this, we investigate a radiogenomic classification using support vector machines to non-invasively predict the 1p/19q status from multimodal MRI data. Different approaches of predicting this status were compared: a direct approach which predicts the 1p/19q co-deletion status and an indirect approach which predicts the mutation status of 1p and 19q individually and combines these predictions to predict the 1p/19q co-deletion status. Using the indirect approach based on both the T1-weighted and T2-weighted images delivered the best result and resulted in a 95% confidence interval for the sensitivity and specificity of [0.44; 0.89] and [0.70; 1.00] respectively.
1p/19q共缺失是低级别胶质瘤的重要预后因素。然而,目前确定1p/19q状态需要活检。为了克服这一点,我们研究了一种使用支持向量机的放射基因组分类方法,从多模态MRI数据中无创地预测1p/19q状态。对预测这种状态的不同方法进行了比较:预测1p/19q共缺失状态的直接方法和单独预测1p和19q突变状态并结合这些预测来预测1p/19q共缺失状态的间接方法。采用基于t1和t2加权图像的间接方法获得了最佳结果,其敏感性和特异性的95%置信区间为[0.44;0.89]和[0.70;分别为1.00)。
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引用次数: 4
Blood cell detection and counting in holographic lens-free imaging by convolutional sparse dictionary learning and coding 基于卷积稀疏字典学习与编码的全息无透镜成像中血细胞检测与计数
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950604
F. Yellin, B. Haeffele, R. Vidal
We propose a convolutional sparse dictionary learning and coding approach for detecting and counting instances of a repeated object in a holographic lens-free image. The proposed approach exploits the fact that an image containing a single object instance can be approximated as the convolution of a (small) object template with a spike at the location of the object instance. Therefore, an image containing multiple non-overlapping instances of an object can be approximated as the sum of convolutions of templates with spikes. Given one or more images, one can learn a dictionary of templates using a convolutional extension of the K-SVD algorithm for sparse dictionary learning. Given a set of templates, one can efficiently detect object instances in a new image using a convolutional extension of the matching pursuit algorithm for sparse coding. Experiments on red blood cell (RBC) and white blood cell (WBC) detection and counting demonstrate that the proposed method produces promising results without requiring additional post-processing.
我们提出了一种卷积稀疏字典学习和编码方法,用于检测和计数全息无透镜图像中重复物体的实例。所提出的方法利用了这样一个事实,即包含单个对象实例的图像可以近似为(小)对象模板与对象实例位置处的尖峰的卷积。因此,包含多个对象的非重叠实例的图像可以近似为带有尖峰的模板的卷积之和。给定一个或多个图像,可以使用用于稀疏字典学习的K-SVD算法的卷积扩展来学习模板字典。给定一组模板,使用稀疏编码匹配追踪算法的卷积扩展,可以有效地检测新图像中的对象实例。红细胞(RBC)和白细胞(WBC)的检测和计数实验表明,该方法无需额外的后处理就能产生令人满意的结果。
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引用次数: 19
High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation 基于CEL0稀疏近似的超分辨显微镜高密度分子定位
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950460
S. Gazagnes, Emmanuel Soubies, L. Blanc-Féraud
Single molecule localization microscopy has made great improvements in spatial resolution achieving performance beyond the diffraction limit by sequentially activating and imaging small subsets of molecules. Here, we present an algorithm designed for high-density molecule localization which is of a major importance in order to improve the temporal resolution of such microscopy techniques. We formulate the localization problem as a sparse approximation problem which is then relaxed using the recently proposed CEL0 penalty, allowing an optimization through recent nonsmooth nonconvex algorithms. Finally, performances of the proposed method are compared with one of the best current method for high-density molecules localization on simulated and real data.
单分子定位显微镜在空间分辨率方面取得了很大的进步,通过顺序激活和成像小分子子集,实现了超越衍射极限的性能。在这里,我们提出了一种高密度分子定位算法,这对于提高此类显微镜技术的时间分辨率至关重要。我们将定位问题表述为一个稀疏逼近问题,然后使用最近提出的CEL0惩罚进行放松,允许通过最近的非光滑非凸算法进行优化。最后,在模拟数据和实际数据上,将该方法与目前最优的高密度分子定位方法进行了性能比较。
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引用次数: 43
Deep learning based multi-label classification for surgical tool presence detection in laparoscopic videos 基于深度学习的腹腔镜视频手术工具存在检测的多标签分类
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950597
Sheng Wang, Ashwin Raju, Junzhou Huang
Automatic recognition of surgical workflow is an unresolved problem among the community of computer-assisted interventions. Among all the features used for surgical workflow recognition, one important feature is the presence of the surgical tools. Extracting this feature leads to the surgical tool presence detection problem to detect what tools are used at each time in surgery. This paper proposes a deep learning based multi-label classification method for surgical tool presence detection in laparoscopic videos. The proposed method combines two state-of-the-art deep neural networks and uses ensemble learning to solve the tool presence detection problem as a multi-label classification problem. The performance of the proposed method has been evaluated in the surgical tool presence detection challenge held by Modeling and Monitoring of Computer Assisted Interventions workshop. The proposed method shows superior performance compared to other methods and has won the first place of the challenge.
手术流程的自动识别是计算机辅助干预领域尚未解决的问题。在所有用于手术工作流程识别的特征中,一个重要的特征是手术工具的存在。提取此特征会导致手术工具存在检测问题,以检测每次手术中使用的工具。提出了一种基于深度学习的腹腔镜视频中手术工具存在检测的多标签分类方法。该方法结合了两种最先进的深度神经网络,并使用集成学习将工具存在检测问题作为多标签分类问题来解决。所提出的方法的性能已经在由计算机辅助干预建模和监测研讨会举行的手术工具存在检测挑战中进行了评估。与其他方法相比,该方法表现出优越的性能,并获得了挑战赛的第一名。
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引用次数: 36
Classification of the dermal-epidermal junction using in-vivo confocal microscopy 真皮-表皮连接处的活体共聚焦显微镜分类
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950513
J. Robic, B. Perret, A. Nkengne, M. Couprie, Hugues Talbot
Reflectance confocal microscopy (RCM) is a powerful tool to visualize the skin layers at cellular resolution. The dermal-epidermal junction (DEJ) is a thin complex 3D structure. It appears as a low-contrasted structure in confocal en-face sections, which is difficult to recognize visually, leading to uncertainty in the classification. In this article, we propose an automated method for segmenting the DEJ with reduced uncertainty. The proposed approach relies on a 3D Conditional Random Field to model the skin biological properties and impose regularization constraints. We improve the restitution of the epidermal and dermal labels while reducing the thickness of the uncertainty area in a coherent biological way from 16.9 µm (ground-truth) to 10.3 µm.
反射共聚焦显微镜(RCM)是一个强大的工具,可视化皮肤层在细胞分辨率。真皮-表皮交界处(DEJ)是一个薄而复杂的三维结构。在共聚焦面切面上表现为低对比度结构,视觉上难以识别,导致分类不确定。在本文中,我们提出了一种自动化的方法来分割DEJ与减少不确定性。该方法依赖于三维条件随机场来模拟皮肤生物特性并施加正则化约束。我们改善了表皮和真皮标签的恢复,同时以连贯的生物学方式将不确定区域的厚度从16.9µm(真值)减少到10.3µm。
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引用次数: 9
4D-PET reconstruction of dynamic non-small cell lung cancer [18-F]-FMISO-PET data using adaptive-knot cubic B-splines 使用自适应结三次b样条重建动态非小细胞肺癌[18-F]-FMISO-PET数据
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950729
G. Ralli, D. McGowan, M. Chappell, Ricky A. Sharma, G. Higgins, J. Fenwick
4D-PET reconstruction has the potential to significantly increase the signal-to-noise ratio in dynamic PET by fitting smooth temporal functions during the reconstruction. However, the optimal choice of temporal function remains an open question. A 4D-PET reconstruction algorithm using adaptive-knot cubic B-splines is proposed. Using realistic Monte-Carlo simulated data from a digital patient phantom representing an [18-F]-FMISO-PET scan of a non-small cell lung cancer patient, this method was compared to a spectral model based 4D-PET reconstruction and the conventional MLEM and MAP algorithms. Within the entire patient region the proposed algorithm produced the best bias-noise trade-off, while within the tumor region the spline- and spectral model-based reconstructions gave comparable results.
4D-PET重建有可能通过在重建过程中拟合平滑的时间函数来显著提高动态PET的信噪比。然而,时间函数的最佳选择仍然是一个悬而未决的问题。提出了一种基于自适应结三次b样条的4D-PET重建算法。使用来自代表非小细胞肺癌患者[18-F]-FMISO-PET扫描的数字患者幻影的真实蒙特卡罗模拟数据,将该方法与基于光谱模型的4D-PET重建以及传统的MLEM和MAP算法进行比较。在整个患者区域内,所提出的算法产生了最佳的偏置-噪声权衡,而在肿瘤区域内,基于样条和光谱模型的重建给出了可比的结果。
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引用次数: 3
A convolutional neural network approach for abnormality detection in Wireless Capsule Endoscopy 基于卷积神经网络的无线胶囊内窥镜异常检测
Pub Date : 2017-04-18 DOI: 10.1109/ISBI.2017.7950698
A. Sekuboyina, S. T. Devarakonda, C. Seelamantula
In wireless capsule endoscopy (WCE), a swallowable miniature optical endoscope is used to transmit color images of the gastrointestinal tract. However, the number of images transmitted is large, taking a significant amount of the medical expert's time to review the scan. In this paper, we propose a technique to automate the abnormality detection in WCE images. We split the image into several patches and extract features pertaining to each block using a convolutional neural network (CNN) to increase their generality while overcoming the drawbacks of manually crafted features. We intend to exploit the importance of color information for the task. Experiments are performed to determine the optimal color space components for feature extraction and classifier design. We obtained an area under receiver-operating-characteristic (ROC) curve of approximately 0.8 on a dataset containing multiple abnormalities.
无线胶囊内窥镜(WCE)是一种可吞咽的微型光学内窥镜,用于传输胃肠道的彩色图像。然而,传输的图像数量很大,花费了医学专家大量的时间来检查扫描结果。本文提出了一种自动检测WCE图像异常的方法。我们将图像分成几个块,并使用卷积神经网络(CNN)提取与每个块相关的特征,以提高其通用性,同时克服手动制作特征的缺点。我们打算利用颜色信息对这项任务的重要性。进行实验以确定最优的颜色空间成分,用于特征提取和分类器设计。在包含多个异常的数据集上,我们获得了接受者工作特征(ROC)曲线下的面积约为0.8。
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引用次数: 38
Image restoration of medical images with streaking artifacts by Euler's elastica inpainting 用欧拉弹性法修复带有条纹伪影的医学图像
Pub Date : 2017-04-01 DOI: 10.1109/ISBI.2017.7950509
Xiaochen Zhang, J. Wan
Streaking artifacts caused by metallic objects severely affect the visual quality of CT images, resulting in medical misdiagnosis. Commonly used approaches for metal artifact reduction usually consist of interpolation and iterative methods. The former one tends to lose image quality by introducing extra artifacts, while the latter is more computational expensive. This paper proposes a new approach based on the Euler's elastica inpainting technique, which can preserve sharp edges and curvature when reconstructing the sinogram image, resulting in better quality in the restored CT image. Results of quantitative and qualitative experiments on both simulated phantoms and clinical CT images demonstrate that our method can suppress metal artifacts significantly.
金属物体引起的条纹伪影严重影响CT图像的视觉质量,造成医疗误诊。金属伪影减小常用的方法通常包括插值法和迭代法。前者容易因引入额外的伪影而导致图像质量下降,而后者的计算成本更高。本文提出了一种基于欧拉弹性图像修复技术的新方法,该方法在重建正弦图图像时可以保留图像的尖锐边缘和曲率,从而使重建后的CT图像具有更好的质量。在模拟幻影和临床CT图像上的定量和定性实验结果表明,我们的方法可以显著抑制金属伪影。
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引用次数: 5
Closed-form alignment of active surface models using splines 利用样条对活动曲面模型进行闭式对齐
Pub Date : 2017-04-01 DOI: 10.1109/ISBI.2017.7950505
D. Schmitter, M. Unser
We propose a new formulation of the active surface model in 3D. Instead of aligning a shape dictionary through the similarity transform, we consider more flexible affine transformations and introduce an alignment method that is unbiased in the sense that it implicitly constructs a common reference shape. Our formulation is expressed in the continuous domain and we provide an algorithm to exactly implement the framework using spline-based parametric surfaces. We test our model on real 3D MRI data. A comparison with the classical active shape model shows that our method allows us to capture shape variability in a dictionary in a more precise way.
提出了一种新的三维活动曲面模型。与通过相似变换对齐形状字典不同,我们考虑了更灵活的仿射变换,并引入了一种无偏的对齐方法,因为它隐含地构建了一个共同的参考形状。我们的公式是在连续域中表示的,我们提供了一种算法来精确地实现基于样条的参数曲面框架。我们在真实的3D MRI数据上测试了我们的模型。与经典的活动形状模型的比较表明,我们的方法可以更精确地捕获字典中的形状变化。
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引用次数: 0
期刊
2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017)
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