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Engineering the native methylotrophs for the bioconversion of methanol to value-added chemicals: current status and future perspectives 甲醇生物转化为增值化学品的天然甲基化营养体工程:现状和未来展望
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-06-01 DOI: 10.1016/j.gce.2022.10.005
Jing Wang, Ruirui Qin, Yuanke Guo, Chen Ma, Xin Wang, Kequan Chen, Pingkai Ouyang

Methanol is becoming an attractive fermentation feedstock for large-scale bioproduction of chemicals, due to its natural abundance and mature production technology. Native methylotrophs, which can utilize methanol as the only source of carbon and energy, are ideal hosts for methanol bioconversion due to their high methanol utilization rate and have been extensively employed in the production of value-added chemicals from methanol. Here, we review the natural methanol utilization pathways in native methylotrophs, describing the available synthetic biology tools developed for engineering native methylotrophs, and discuss the strategies for improving their methanol utilization efficiency. Finally, the representative examples of engineering the native methylotrophs to produce value-added products from methanol are summarized. Furthermore, we also discuss the major challenges and possible solutions for the application of native methylotrophs in methanol-based biomanufacturing.

甲醇由于其天然的丰富性和成熟的生产技术,正在成为大规模生物化工生产的一种有吸引力的发酵原料。天然甲基营养物可以利用甲醇作为唯一的碳和能源来源,由于其甲醇利用率高,是甲醇生物转化的理想宿主,并已被广泛用于从甲醇生产增值化学品。在这里,我们回顾了天然甲基营养体中的天然甲醇利用途径,描述了为工程天然甲基营养物开发的可用合成生物学工具,并讨论了提高其甲醇利用效率的策略。最后,总结了利用甲醇改造天然甲基营养物生产高附加值产品的代表性实例。此外,我们还讨论了天然甲基营养物在甲醇生物制造中应用的主要挑战和可能的解决方案。
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引用次数: 5
OFC: Outside Front Cover OFC:外封面
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-06-01 DOI: 10.1016/S2666-9528(23)00013-4
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引用次数: 0
Characterization of glucose isomerase-producing bacteria and optimization of fermentation conditions for producing glucose isomerase using biomass 产糖异构酶细菌的鉴定及生物质产糖异构酶发酵条件的优化
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-06-01 DOI: 10.1016/j.gce.2022.05.003
Aristide Laurel Mokale Kognou , Chonlong Chio , Janak Raj Khatiwada , Sarita Shrestha , Xuantong Chen , Hongwei Li , Yuen Zhu , Zi-Hua Jiang , Chunbao (Charles) Xu , Wensheng Qin

Glucose isomerase (GI) is an enzyme with high potential applications. Characterization of GI producing bacteria with interesting properties from an industrial point of view is essential. Bacillus sp., Paenarthrobacter sp., Chryseobacterium sp., Hymenobacter sp., Mycobacterium sp., and Stenotrophomonas sp. were isolated from soil samples. Optimization of enzyme production yield was investigated in various fermentation conditions using response surface methodology. All isolates exhibited maximum GI activity at 40 °C, pH 6–8 after 4 days of incubation. A mixture of peptone/yeast extract or tryptone/peptone enhanced higher enzyme production. The same trend was observed in fermentation medium containing 1% xylose or 2%–2.5% wheat straw. This study advanced the knowledge of these bacterial isolates in promoting wheat straw as feedstock for the bio-based industry.

葡萄糖异构酶(GI)是一种应用前景广阔的酶。从工业角度对具有有趣特性的GI产生菌进行表征是至关重要的。从土壤样品中分离出芽孢杆菌属(Bacillus sp.)、Paenarvonacter sp.、Chrysobacterium sp.、膜壳杆菌属(Hymenobacter sp..)、分枝杆菌属(Mycobacterum sp.)和狭窄单胞菌属(Stenotrophomonas sp.)。采用响应面法研究了不同发酵条件下酶产量的优化。培养4天后,所有分离株在40°C、pH 6-8时均表现出最大的GI活性。蛋白胨/酵母提取物或胰蛋白酶/蛋白胨的混合物提高了较高的酶产量。在含有1%木糖或2%–2.5%麦秆的发酵培养基中也观察到了相同的趋势。本研究在推广麦草作为生物工业原料方面提高了对这些菌株的认识。
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引用次数: 4
Biomanufacturing boosts the high-level development of economy and society 生物制造促进了经济社会的高水平发展
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-06-01 DOI: 10.1016/j.gce.2023.03.004
Chun Li, An-Ping Zeng, Ying-Jin Yuan
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引用次数: 0
Multi-functional engineered polypeptide-based drug delivery systems for improved cancer therapy 用于改善癌症治疗的多功能工程多肽给药系统
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-06-01 DOI: 10.1016/j.gce.2022.07.010
Xiaobin Li , Junyu Liu , Haihong Chen , Yaxin Chen , Yi Wang , Can Yang Zhang , Xin-Hui Xing

With the rapid development of chemical engineering and biotechnology, polypeptide, as a promising candidate in the biomedical field, has been thoroughly investigated and extensively used as the drug delivery vehicle for diseases treatment, especially cancer, owing to the high biocompatibility, good biodegradability, versatile constructions, and diverse functions. Engineered polypeptide-based drug delivery system (so-called EPP-DDS) can deliver the cargos to the target site via a specific recognition effect, followed by overcoming the barriers like blood brain barrier (BBB) and releasing them by responding to the microenvironment cues, to improve the therapeutic efficacy and reduce the side-effect. Herein, it's of great importance to conclude and summarize the updates on EPP-DDS developed by chemical engineering methods. In this review, we first summarized the recent updates in the manufacturing of polypeptide and preparation of EPP-DDS based on green biochemical engineering and/or synthetic processes for cancer therapy, including chemotherapy, immunotherapy, photodynamic therapy (PDT), gene therapy, and combination therapy. Then, we surveyed the research progress of inflammation-mediated cancer treatment strategies based on EPP-DDS with high anti-inflammation activity. Finally, we concluded the discovery and green production process of engineered polypeptide, challenges, and perspectives of EPP-DDS. Overall, the EPP-DDS has great potential for cancer therapy in the clinic with improved therapeutic efficacy and reduced adverse effect, which needs the innovation of green biochemical engineering for customized design and production of polypeptides.

随着化学工程和生物技术的快速发展,多肽作为生物医学领域的一种很有前途的候选药物,由于其高的生物相容性、良好的生物降解性、多功能的结构和多样的功能,已被广泛研究和应用于疾病治疗,尤其是癌症的给药载体。基于工程多肽的药物递送系统(所谓的EPP-DDS)可以通过特定的识别作用将货物递送到靶位点,然后克服血脑屏障(BBB)等屏障,并通过响应微环境线索释放它们,以提高治疗效果并减少副作用。在此,总结和总结化学工程方法开发的EPP-DDS的最新进展具有重要意义。在这篇综述中,我们首先总结了癌症治疗中基于绿色生物化学工程和/或合成工艺的多肽制造和EPP-DS制备的最新进展,包括化疗、免疫疗法、光动力疗法(PDT)、基因疗法和联合疗法。然后,我们综述了基于具有高抗炎活性的EPP-DS的炎症介导的癌症治疗策略的研究进展。最后,我们总结了工程多肽的发现和绿色生产过程,EPP-DDS的挑战和前景。总体而言,EPP-DDS在临床治疗癌症方面具有巨大的潜力,提高了疗效,减少了不良反应,这需要绿色生物化学工程的创新来定制多肽的设计和生产。
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引用次数: 2
Ionic-microenvironment stabilizes the disulfide engineered lysine decarboxylase for efficient cadaverine production 离子微环境稳定二硫键工程赖氨酸脱羧酶以高效生产尸胺
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-06-01 DOI: 10.1016/j.gce.2021.11.010
Zhuang Li , Yaju Xue , Xiuling Ji , Yuhong Huang

Cadaverine is the key monomer for the synthesis of nylon 5X. Efficient and alkaline stable lysine decarboxylases are highly desirable for cadaverine production as the reaction pH increasing from 6.3 to 8.5. However, the most studied lysine decarboxylase CadA (E. coli) lost almost all activity at pH 8.0, which is the foremost challenge for the industrial-cadaverine production. In this study, we first found that the Na+-microenvironment significantly improved the alkaline stability of the disulfide engineered lysine decarboxylase ΔLdcEt3 (P233C/L628C) (half-life 362 h), compared to the conventional buffer (half-life 0.66 h) at pH 8.0. Meanwhile, the whole-cell conversion efficiency of the industrial-grade l-lysine with ΔLdcEt3 could reach up to 99% in 2 h in the fermenter. Experimental investigation and molecular dynamics confirmed that Na+-microenvironment could improve active-aggregation state and affect secondary structure of ΔLdcEt3. Therefore, Na+-microenvironment stabilizes ΔLdcEt3 providing a great potential industrial application for high-level cadaverine production.

Cadaverine是合成尼龙5X的关键单体。当反应pH从6.3增加到8.5时,高效和碱性稳定的赖氨酸脱羧酶对于尸胺的生产是非常需要的。然而,研究最多的赖氨酸脱羧酶CadA(大肠杆菌)在pH 8.0时几乎失去了所有活性,这是工业化尸胺生产的首要挑战。在这项研究中,我们首先发现Na+-微环境显著改善了二硫化物工程赖氨酸脱羧酶ΔLdcEt3(P233C/L628C)的碱性稳定性(半衰期362 h) ,与传统缓冲液相比(半衰期0.66 h) pH 8.0。同时,工业级l-赖氨酸与ΔLdcEt3的全细胞转化率在2 h。实验研究和分子动力学证实,Na+-微环境可以改善ΔLdcEt3的活性聚集状态并影响其二级结构。因此,Na+-微环境稳定了ΔLdcEt3,为高水平的尸胺生产提供了巨大的工业应用潜力。
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引用次数: 2
Enzyme annotation for orphan reactions and its applications in biomanufacturing 孤立反应的酶注释及其在生物制造中的应用
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-06-01 DOI: 10.1016/j.gce.2022.10.003
Zhen Zhang , Chun Li

There are lots of biochemical reactions in the biosynthetic pathway without associated enzymes. Reactions predicted by retro-biosynthetic tools are not assigned gene sequences. Besides, non-natural reactions designed with novel functions also lack suitable enzymes. All these reactions can be categorized as orphan reactions. The absence of protein-encoding genes in these orphan reactions limits their direct experimental implementation. Computational tools have been developed to find candidate enzymes for these orphan reactions. Herein, we discuss recent advances in these computational tools, including reaction similarity-based methods for calculating the substructural similarity between orphan reactions and known enzymatic reactions; sequence-based tools combine metabolic knowledge base and phenotypic information with genomic, transcriptomic, and metabolomic data to mine appropriate enzymes for orphan reactions; and approaches based on the creation of enzyme variants for orphan reactions as enzyme engineering modifications and de novo design of enzymes. We believe that our review will greatly facilitate the design of microbial cell factories and contribute to the development of the biomanufacturing field.

在没有相关酶的情况下,生物合成途径中存在许多生化反应。反生物合成工具预测的反应没有指定基因序列。此外,设计具有新功能的非天然反应也缺乏合适的酶。所有这些反应都可以归类为孤立反应。在这些孤儿反应中缺乏蛋白质编码基因限制了它们的直接实验实施。已经开发了计算工具来寻找这些孤立反应的候选酶。在此,我们讨论了这些计算工具的最新进展,包括基于反应相似性的方法,用于计算孤立反应和已知酶反应之间的子结构相似性;基于序列的工具将代谢知识库和表型信息与基因组、转录组和代谢组学数据相结合,为孤儿反应挖掘合适的酶;以及基于创建孤儿反应的酶变体作为酶工程修饰和酶的从头设计的方法。我们相信,我们的审查将极大地促进微生物细胞工厂的设计,并有助于生物制造领域的发展。
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引用次数: 2
Organic functional dyes 有机功能染料
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-05-30 DOI: 10.1016/j.gce.2023.05.002
Zhi-Qian Guo, Wei-Hong Zhu, Jiangli Fan, Jong Seung Kim
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引用次数: 0
Alternative technology for the recovery of butyl acetate with low concentration: high capacity adsorbent and high efficiency adsorption 低浓度乙酸丁酯回收的替代技术:高容量吸附剂和高效吸附
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-05-18 DOI: 10.1016/j.gce.2023.05.001
Chi Ma , Lihong Zhao , Zhengxin Mao , Hao Su , Qingfen Liu

Industrial pharmaceutical wastewater usually contains butyl acetate (BA) with a concentration of 1 wt%–7 wt%, and the traditional method for BA recovery is distillation with high energy consumption. Adsorption method is developed to recover BA with low concentration for the high efficiency and low energy consumption. Medium polar polyacrylate resins with macroporous structure of 233.1 nm and average particle size of about 526.5 μm are successfully synthesized by suspension polymerization and used for the BA adsorption and desorption. The maximum adsorption capacity reaches 171.1 mg g−1 with relative standard deviation (RSD) value of 0.2%, which is more than twice the results in the literature. The BA desorption rate is 97.0% at 100 °C with RSD value of 0.4%, and the resins are beneficial to the reuse in the adsorption-desorption cycle. The adsorption thermodynamics and kinetics are investigated, and the BA adsorption is a spontaneous and endothermic process with the increase of disorder degree. This process is mainly contributed by physical absorption and agree well with Freundlich model and pseudo-first-order adsorption kinetic model. The adsorption method avoids boiling a large amount of wastewater and hopefully provides a novel alternative technology for the BA recovery.

工业制药废水中通常含有浓度为 1 wt%-7 wt% 的乙酸丁酯(BA),传统的乙酸丁酯回收方法是蒸馏,能耗较高。为了高效、低能耗地回收低浓度的乙酸丁酯,开发了吸附法。采用悬浮聚合法成功合成了大孔结构为 233.1 nm、平均粒径约为 526.5 μm 的中极性聚丙烯酸酯树脂,并将其用于 BA 的吸附和解吸。其最大吸附容量达到 171.1 mg g-1,相对标准偏差(RSD)值为 0.2%,是文献结果的两倍多。在 100 °C 条件下,BA 的解吸率为 97.0%,RSD 值为 0.4%,树脂在吸附-解吸循环中有利于重复使用。对吸附热力学和动力学进行了研究,发现随着无序度的增加,BA 吸附是一个自发的内热过程。该过程主要由物理吸附促成,并与 Freundlich 模型和伪一阶吸附动力学模型吻合。该吸附法避免了大量废水的沸腾,有望为 BA 回收提供一种新的替代技术。
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引用次数: 0
Sequential pyrolysis for understanding specific influence of cellulose- and lignin-derived volatiles on properties of counterpart char 顺序热解了解纤维素和木质素衍生的挥发物对对应炭性质的具体影响
Q1 ENGINEERING, CHEMICAL Pub Date : 2023-04-26 DOI: 10.1016/j.gce.2023.04.004
Yuewen Shao , Chao Li , Mengjiao Fan , Guoming Gao , Stelgen Inkoua , Lijun Zhang , Shu Zhang , Jun Xiang , Song Hu , Xun Hu

Interactions of cellulose- and lignin-derived intermediates have been well documented during pyrolysis of lignocellulosic biomass. The reaction network for the interactions is rather complex, as cellulose-derived volatiles could interact/react with not only lignin-derived volatiles but also lignin-derived char and vice versa. To probe specifically the impacts of cellulose-derived volatiles on the lignin-derived char or the opposite, herein the sequential pyrolysis was performed by arranging cellulose in the upper bed with lignin in the lower bed or lignin above with cellulose below at 350 and 650 °C, respectively. The results indicated that the sequential pyrolysis of cellulose→lignin or lignin→cellulose at 350 °C induced increased char yield from formation of carbonaceous deposits via volatiles-char interactions. Compared with the lignin-derived volatiles, the cellulose-derived volatiles, especially aldehyde fractions, were more reactive towards the lignin-derived char at 350 °C, forming oxygen-rich lignin-derived char with a higher yield, an abundance of aliphatic structures and consequently lower thermal stability. In sequential pyrolysis of lignin→cellulose, more aromatics-rich species were deposited on cellulose-derived char, but the lignin-derived volatiles were less reactive for enhancing the char yield. At 650 °C, instead of polymerisation of the volatiles on the char, either the cellulose- or lignin-derived char catalyzed the cracking of the counterpart volatiles to remove the aliphatic functionalities, which made the char more aromatic and thermally more stable.

在木质纤维素生物质热解过程中,纤维素和木质素衍生中间产物之间的相互作用已被充分记录。相互作用的反应网络相当复杂,因为纤维素衍生的挥发物不仅会与木质素衍生的挥发物发生相互作用/反应,还会与木质素衍生的炭发生相互作用/反应,反之亦然。为了具体探究纤维素衍生挥发物对木质素衍生炭的影响或相反的影响,在此分别在 350 和 650 °C 下进行了纤维素在上层、木质素在下层或木质素在上层、纤维素在下层的顺序热解。结果表明,在 350 ℃ 下依次热解纤维素→木质素或木质素→纤维素可通过挥发物与炭的相互作用形成炭质沉积物,从而提高产炭量。与木质素衍生的挥发物相比,纤维素衍生的挥发物,尤其是醛馏分,在 350 ℃ 下对木质素衍生的炭更有反应性,形成富氧木质素衍生的炭,产率更高、脂肪族结构更丰富,因此热稳定性更低。在木质素→纤维素的顺序热解过程中,更多富含芳烃的物质沉积在纤维素衍生的炭上,但木质素衍生的挥发物对提高炭产率的活性较低。在 650 °C 时,无论是纤维素还是木质素衍生的木炭都不会使木炭上的挥发物聚合,而是催化对应挥发物裂解以去除脂肪族官能团,从而使木炭更具芳香性和热稳定性。
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引用次数: 0
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Green Chemical Engineering
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